Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0331011 Helianthus annuus HOM05D035861 ORTHO05D012488 4.7e-70 267.7 132 100.0
HanXRQChr08g0214351 Helianthus annuus HOM05D035861 ORTHO05D012488 4.2e-66 254.6 132 95.5
HanXRQChr10g0299541 Helianthus annuus HOM05D035861 ORTHO05D227065 1.6e-38 162.9 82 97.6
HanXRQChr08g0218271 Helianthus annuus HOM05D001137 ORTHO05D001967 3.5e-12 75.5 45 84.4
ECA233G4897 Erigeron canadensis HOM05D001137 ORTHO05D001967 3.8e-11 72.0 45 80.0
HanXRQChr14g0426961 Helianthus annuus HOM05D000549 ORTHO05D012488 5.0e-11 71.6 44 79.5
HanXRQChr14g0455821 Helianthus annuus HOM05D001137 ORTHO05D001967 1.5e-10 70.1 45 77.8
Lsat_1_v5_gn_8_17681 Lactuca sativa HOM05D001137 ORTHO05D001967 1.5e-10 70.1 44 77.3
Actinidia18554 Actinidia chinensis HOM05D001137 ORTHO05D001967 2.1e-09 66.2 45 71.1
Nitab4.5_0004047g0020 Nicotiana tabacum HOM05D001137 ORTHO05D001967 3.6e-09 65.5 63 54.0
Nitab4.5_0013007g0020 Nicotiana tabacum HOM05D001137 ORTHO05D001967 3.6e-09 65.5 63 54.0
Solyc11g007960.2 Solanum lycopersicum HOM05D001137 ORTHO05D001967 6.1e-09 64.7 63 54.0
Peaxi162Scf00409g00217 Petunia axillaris HOM05D001137 ORTHO05D001967 8.0e-09 64.3 45 68.9
Cc02_g10600 Coffea canephora HOM05D001137 ORTHO05D001967 1.0e-08 63.9 53 60.4
HanXRQChr07g0189061 Helianthus annuus HOM05D001137 ORTHO05D012488 1.0e-08 63.9 49 65.3
PGSC0003DMG400027336 Solanum tuberosum HOM05D001137 ORTHO05D001967 1.4e-08 63.5 63 52.4
CSS0017275 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D001967 1.8e-08 63.2 45 68.9
PSO339G5782 Papaver somniferum HOM05D001137 ORTHO05D001967 2.3e-08 62.8 45 68.9
CAN.G135.23 Capsicum annuum HOM05D001137 ORTHO05D001967 3.0e-08 62.4 45 68.9
Lsat_1_v5_gn_2_103340 Lactuca sativa HOM05D001137 ORTHO05D001967 3.0e-08 62.4 45 68.9
Aa31LG11G5290 Aethionema arabicum HOM05D001137 ORTHO05D001967 4.0e-08 62.0 45 64.4
CSS0018144 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D001967 4.0e-08 62.0 44 68.2
ECA238G1049 Erigeron canadensis HOM05D001137 ORTHO05D001967 4.0e-08 62.0 45 66.7
MD02G1242500 Malus domestica HOM05D001137 ORTHO05D001967 4.0e-08 62.0 45 68.9
Cpa.g.sc706.5 Carica papaya HOM05D001137 ORTHO05D001967 5.2e-08 61.6 45 68.9
Gohir.D05G292500 Gossypium hirsutum HOM05D001137 ORTHO05D001967 5.2e-08 61.6 45 66.7
PSO339G2160 Papaver somniferum HOM05D001137 ORTHO05D001967 5.2e-08 61.6 45 68.9
Sopen11g003830 Solanum pennellii HOM05D001137 ORTHO05D001967 5.2e-08 61.6 63 52.4
Carub.0006s0336 Capsella rubella HOM05D001137 ORTHO05D001967 6.7e-08 61.2 45 64.4
Rhsim09G0145600 Rhododendron simsii HOM05D001137 ORTHO05D001967 6.7e-08 61.2 45 64.4
CARHR208890 Cardamine hirsuta HOM05D001137 ORTHO05D001967 8.8e-08 60.8 45 62.2
Thhalv10013283m.g Eutrema salsugineum HOM05D001137 ORTHO05D001967 8.8e-08 60.8 45 64.4
Lj2A24T64 Lonicera japonica HOM05D001137 ORTHO05D001967 8.8e-08 60.8 45 64.4
GSVIVG01016168001 Vitis vinifera HOM05D001137 ORTHO05D001967 8.8e-08 60.8 45 66.7
Gohir.A05G291400 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.2e-07 60.5 45 66.7
Gorai.009G308900 Gossypium raimondii HOM05D001137 ORTHO05D001967 1.2e-07 60.5 45 66.7
MD07G1074000 Malus domestica HOM05D001137 ORTHO05D001967 1.2e-07 60.5 45 66.7
vmacro10260 Vaccinium macrocarpon HOM05D001137 ORTHO05D001967 1.2e-07 60.5 45 64.4
RcHm_v2.0_Chr1g0335251 Rosa chinensis HOM05D001137 ORTHO05D001967 1.5e-07 60.1 44 68.2
Lj3A936G52 Lonicera japonica HOM05D001137 ORTHO05D001967 2.0e-07 59.7 45 66.7
COL.COLO4_32891 Corchorus olitorius HOM05D001137 ORTHO05D001967 3.3e-07 58.9 45 64.4
FvH4_7g06590 Fragaria vesca HOM05D001137 ORTHO05D001967 3.3e-07 58.9 44 65.9
FAN01G2662 Fragaria x ananassa HOM05D001137 ORTHO05D001967 3.3e-07 58.9 44 65.9
FAN03G0121 Fragaria x ananassa HOM05D001137 ORTHO05D001967 3.3e-07 58.9 44 65.9
FAN06G0232 Fragaria x ananassa HOM05D001137 ORTHO05D001967 3.3e-07 58.9 44 65.9
FAN10G1487 Fragaria x ananassa HOM05D001137 ORTHO05D001967 3.3e-07 58.9 44 65.9
Aqoxy195s004 Aquilegia oxysepala HOM05D001137 ORTHO05D001967 4.4e-07 58.5 42 69.0
Aqoxy1G01084 Aquilegia oxysepala HOM05D001137 ORTHO05D001967 4.4e-07 58.5 42 69.0
AUR62041266 Chenopodium quinoa HOM05D001137 ORTHO05D001967 4.4e-07 58.5 44 65.9
AUR62041798 Chenopodium quinoa HOM05D001137 ORTHO05D001967 4.4e-07 58.5 44 65.9
Ciclev10031292m.g Citrus clementina HOM05D001137 ORTHO05D001967 4.4e-07 58.5 45 64.4
Sp6g38320 Schrenkiella parvula HOM05D001137 ORTHO05D001967 4.4e-07 58.5 45 60.0
Ah.04g163570 Amaranthus hybridus HOM05D001289 ORTHO05D006592 5.7e-07 58.2 44 63.6
AL6G14040 Arabidopsis lyrata HOM05D001137 ORTHO05D001967 5.7e-07 58.2 45 57.8
MBI17_g25737_MAGBIO Magnolia biondii HOM05D001137 ORTHO05D001967 5.7e-07 58.2 45 64.4
Oeu016291.1 Olea europaea HOM05D001137 ORTHO05D001967 5.7e-07 58.2 53 56.6
MSTRG.8119 Avicennia marina HOM05D001137 ORTHO05D001967 7.5e-07 57.8 44 65.9
BcaB01g05897 Brassica carinata HOM05D001137 ORTHO05D001967 7.5e-07 57.8 45 60.0
BcaNung04622 Brassica carinata HOM05D001137 ORTHO05D001967 7.5e-07 57.8 45 60.0
A03p01670 Brassica napus HOM05D001137 ORTHO05D001967 7.5e-07 57.8 45 60.0
C03p02040 Brassica napus HOM05D001137 ORTHO05D001967 7.5e-07 57.8 45 60.0
BolC3t12757H Brassica oleracea HOM05D001137 ORTHO05D001967 7.5e-07 57.8 45 60.0
BraA03t09542Z Brassica rapa HOM05D001137 ORTHO05D001967 7.5e-07 57.8 45 60.0
Migut.F01684 Erythranthe guttata HOM05D001137 ORTHO05D001967 7.5e-07 57.8 44 68.2
Prupe.2G091900 Prunus persica HOM05D001137 ORTHO05D001967 7.5e-07 57.8 45 64.4
Thecc.10G089100 Theobroma cacao HOM05D001137 ORTHO05D001967 7.5e-07 57.8 45 64.4
CANSAT56G2729 Cannabis sativa HOM05D001137 ORTHO05D001967 9.7e-07 57.4 44 65.9
Duzib114G0923 Durio zibethinus HOM05D001137 ORTHO05D001967 9.7e-07 57.4 45 62.2
DCAR_006390 Daucus carota HOM05D001137 ORTHO05D001967 1.3e-06 57.0 44 68.2
Nn6g35207 Nelumbo nucifera HOM05D001137 ORTHO05D001967 1.3e-06 57.0 48 56.2
TAR623G1553 Trochodendron aralioides HOM05D001137 ORTHO05D001967 1.3e-06 57.0 45 62.2
CiPaw.01G265600 Carya illinoinensis HOM05D001137 ORTHO05D001967 1.7e-06 56.6 45 62.2
THA.LOC104826971 Tarenaya hassleriana HOM05D001137 ORTHO05D001967 1.7e-06 56.6 45 57.8
AT5G04420 Arabidopsis thaliana HOM05D001137 ORTHO05D001967 2.8e-06 55.8 45 57.8
Eucgr.G02738 Eucalyptus grandis HOM05D001137 ORTHO05D001967 2.8e-06 55.8 45 62.2
Manes.10G052700 Manihot esculenta HOM05D001137 ORTHO05D001967 2.8e-06 55.8 45 62.2
Potri.008G031200 Populus trichocarpa HOM05D001137 ORTHO05D001967 2.8e-06 55.8 45 62.2
Potri.010G230300 Populus trichocarpa HOM05D001137 ORTHO05D001967 2.8e-06 55.8 45 62.2
QL08p053120 Quercus lobata HOM05D001137 ORTHO05D001967 3.7e-06 55.5 45 62.2
Lalb_Chr06g0169971 Lupinus albus HOM05D001137 ORTHO05D001967 4.8e-06 55.1 44 61.4
SGA_v2.0_scaffold176G39381 Striga asiatica HOM05D001137 ORTHO05D001967 4.8e-06 55.1 44 65.9
TWI63G1814 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 4.8e-06 55.1 45 60.0
Atru.chr12.899 Acer truncatum HOM05D001137 ORTHO05D001967 6.3e-06 54.7 45 60.0
Lalb_Chr02g0151091 Lupinus albus HOM05D001137 ORTHO05D001967 6.3e-06 54.7 78 37.2
Sabra10G0178700 Salix brachista HOM05D001137 ORTHO05D001967 6.3e-06 54.7 45 60.0
SEGI_13850 Sequoiadendron giganteum HOM05D001137 ORTHO05D001967 6.3e-06 54.7 42 64.3
TWI38G2221 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 6.3e-06 54.7 45 57.8
Ca_10452_v3 Cicer arietinum L. HOM05D001137 ORTHO05D001967 8.2e-06 54.3 44 61.4
Lj5g0022587 Lotus japonicus HOM05D001137 ORTHO05D001967 8.2e-06 54.3 64 46.9


User provided reference genes

Program Settings