Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 0.0e+00 1829.3 945 100.0
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 0.0e+00 1151.3 984 66.7
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 0.0e+00 1112.8 926 65.2
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 0.0e+00 1093.6 965 65.3
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 1.4e-269 933.3 1004 55.1
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 3.2e-261 905.6 950 55.5
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 3.0e-259 899.0 991 54.0
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 7.9e-252 874.4 1006 52.5
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 4.7e-244 848.6 993 50.6
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.4e-243 847.0 985 51.2
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 1.1e-242 844.0 1011 51.2
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.1e-242 844.0 971 52.4
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 2.0e-242 843.2 981 51.7
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 7.4e-242 841.3 906 54.4
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 9.7e-242 840.9 1002 51.6
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 1.3e-241 840.5 1004 51.3
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 1.7e-241 840.1 1004 49.6
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 1.7e-241 840.1 956 50.8
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 6.3e-241 838.2 794 57.6
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 1.2e-239 833.9 908 53.9
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 2.6e-239 832.8 962 51.0
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 4.5e-239 832.0 908 53.7
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 1.7e-238 830.1 961 52.4
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 2.9e-238 829.3 1008 49.6
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 5.5e-237 825.1 907 52.4
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.1e-236 823.2 952 51.5
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 3.6e-236 822.4 922 51.6
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 9.7e-234 814.3 717 59.3
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 3.7e-233 812.4 1016 49.1
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 8.2e-233 811.2 897 52.2
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 1.1e-232 810.8 994 48.3
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.1e-232 810.8 1010 49.2
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 1.8e-232 810.1 991 49.1
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.8e-232 810.1 964 50.3
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 1.2e-231 807.4 939 50.5
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 1.2e-231 807.4 952 49.3
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.6e-231 807.0 954 50.2
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 7.7e-231 804.7 683 59.6
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 1.7e-230 803.5 940 51.0
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 2.9e-230 802.7 987 48.6
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 3.8e-230 802.4 750 59.5
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 5.0e-230 802.0 968 49.9
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.2e-229 799.3 963 50.2
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 7.2e-229 798.1 979 49.2
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 2.7e-228 796.2 1011 48.5
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.8e-227 793.5 943 49.8
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 3.0e-227 792.7 954 50.4
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.0e-227 792.7 973 49.4
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 5.2e-227 792.0 941 49.6
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 1.2e-226 790.8 973 50.4
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 2.6e-226 789.6 921 50.6
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 2.8e-225 786.2 958 48.4
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.1e-224 784.3 1057 45.7
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.4e-224 783.9 877 51.9
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 1.8e-224 783.5 978 48.0
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 3.1e-224 782.7 850 52.4
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 4.1e-224 782.3 932 50.1
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 2.0e-223 780.0 991 47.8
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 2.0e-223 780.0 957 48.6
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 7.7e-223 778.1 882 51.0
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.0e-222 777.7 943 49.4
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.9e-222 776.2 929 47.8
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 2.9e-222 776.2 1016 46.7
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 5.0e-222 775.4 921 48.3
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 4.7e-220 768.8 672 58.9
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 4.0e-219 765.8 967 48.1
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 2.6e-218 763.1 972 48.8
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 2.6e-218 763.1 978 48.6
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 1.7e-217 760.4 878 49.2
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 3.7e-217 759.2 835 52.2
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 4.9e-217 758.8 941 47.9
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 1.1e-216 757.7 779 54.0
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 1.8e-216 756.9 989 46.8
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.8e-216 756.9 968 47.1
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 2.4e-216 756.5 702 57.7
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 3.1e-216 756.1 880 50.1
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 3.1e-216 756.1 882 49.9
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 5.4e-216 755.4 871 50.3
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 7.0e-216 755.0 667 58.2
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 2.0e-215 753.4 664 58.7
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.5e-213 746.5 961 47.6
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 4.3e-213 745.7 953 48.5
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 7.3e-213 745.0 755 52.6
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.2e-212 744.2 932 47.4
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 1.6e-212 743.8 961 47.5
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 2.3e-211 740.0 946 46.5
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 3.0e-211 739.6 982 46.2
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 7.5e-210 734.9 802 50.2
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 1.7e-209 733.8 679 56.0
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 2.2e-209 733.4 669 56.1
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 2.9e-209 733.0 878 49.0
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 6.4e-209 731.9 959 46.9
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.9e-208 730.3 971 45.4
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 1.9e-208 730.3 912 49.0
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 5.4e-208 728.8 897 48.7
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 9.2e-208 728.0 889 49.5
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 6.0e-207 725.3 941 46.3
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 7.3e-205 718.4 1008 44.2
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 1.2e-204 717.6 890 47.1
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 8.0e-204 714.9 968 46.5
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.4e-203 714.1 712 54.2
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 2.0e-202 710.3 738 53.3
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 4.4e-202 709.1 901 47.1
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 1.1e-200 704.5 756 52.2
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 1.1e-200 704.5 996 46.4
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 1.4e-200 704.1 748 52.1
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 5.6e-197 692.2 904 46.6
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 8.1e-196 688.3 705 51.8
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.8e-195 687.2 928 47.6
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 9.9e-194 681.4 901 46.3
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 1.3e-190 671.0 691 51.2
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 6.8e-187 658.7 826 47.1
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 7.1e-176 622.1 733 47.6
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.0e-166 591.7 968 41.1
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 9.6e-165 585.1 1013 40.2
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 8.7e-158 562.0 712 43.4
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 8.2e-156 555.4 638 47.3
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 2.2e-148 530.8 779 42.7
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.2e-130 471.9 660 43.0
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 9.1e-123 445.7 738 42.7
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 4.4e-109 400.2 552 38.8
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 2.3e-102 377.9 305 59.3
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.4e-94 352.1 988 31.5
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 9.2e-91 339.3 1129 28.3
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 4.3e-88 330.5 456 40.1
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.5e-35 155.2 116 64.7
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 8.7e-33 146.7 116 62.1
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 4.5e-29 134.4 371 28.3
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 6.3e-23 114.0 145 47.6
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 3.1e-22 111.7 176 40.9
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 1.3e-12 79.7 81 55.6
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 1.9e-11 75.9 140 35.7
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 2.5e-11 75.5 140 35.7
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 5.5e-11 74.3 81 54.3
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 6.1e-10 70.9 80 50.0
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 1.7e-07 62.8 68 50.0
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 3.1e-06 58.5 318 32.4


User provided reference genes

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