Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 3.9e-82 308.1 162 100.0
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 6.7e-58 227.6 171 73.1
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 3.3e-49 198.7 177 65.0
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 2.4e-39 166.0 132 71.2
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 1.8e-34 149.8 177 59.9
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 4.1e-31 138.7 167 56.9
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 5.3e-31 138.3 171 56.1
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 5.3e-31 138.3 171 56.1
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 2.6e-30 136.0 171 52.6
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 2.9e-29 132.5 170 51.2
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 6.5e-29 131.3 165 52.7
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.1e-28 130.6 170 52.4
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 1.1e-28 130.6 156 53.8
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 1.5e-28 130.2 175 50.9
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 1.9e-28 129.8 165 52.1
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 5.5e-28 128.3 168 54.2
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 2.7e-27 125.9 166 53.0
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 4.7e-27 125.2 157 52.9
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 4.7e-27 125.2 159 52.8
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 8.0e-27 124.4 168 53.6
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 1.4e-26 123.6 154 53.9
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.8e-26 123.2 169 47.3
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 5.2e-26 121.7 171 52.0
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 1.1e-25 120.6 155 52.3
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.0e-25 119.8 173 49.7
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 2.6e-25 119.4 166 53.6
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 4.4e-25 118.6 165 52.7
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.3e-24 117.1 175 48.0
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.7e-24 116.7 168 48.2
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 2.2e-24 116.3 181 48.1
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 2.8e-24 115.9 182 47.8
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 2.8e-24 115.9 167 49.7
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 4.8e-24 115.2 152 52.0
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 6.3e-24 114.8 153 49.0
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 6.3e-24 114.8 183 48.1
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 8.2e-24 114.4 164 51.2
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 8.2e-24 114.4 161 47.2
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 1.1e-23 114.0 168 49.4
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 1.4e-23 113.6 155 52.9
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 1.8e-23 113.2 152 51.3
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.8e-23 113.2 161 50.9
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 2.4e-23 112.8 176 47.7
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.4e-23 112.8 154 48.1
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 5.3e-23 111.7 169 49.1
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 5.3e-23 111.7 160 48.1
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 7.0e-23 111.3 197 43.1
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 7.0e-23 111.3 157 47.8
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 9.1e-23 110.9 159 46.5
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 1.2e-22 110.5 153 49.7
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.0e-22 109.8 171 45.0
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 3.5e-22 109.0 159 47.8
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 3.5e-22 109.0 152 49.3
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 5.9e-22 108.2 153 47.7
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 7.7e-22 107.8 180 43.9
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 1.0e-21 107.5 197 42.1
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 1.7e-21 106.7 158 48.7
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 5.0e-21 105.1 178 47.2
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 8.5e-21 104.4 189 42.9
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 8.5e-21 104.4 169 44.4
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 2.5e-20 102.8 163 46.6
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.6e-19 100.1 158 45.6
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.1e-19 99.8 158 45.6
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 2.7e-19 99.4 180 42.8
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.7e-19 99.4 156 46.8
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.6e-19 99.0 158 44.9
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 3.6e-19 99.0 165 44.8
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 4.7e-19 98.6 184 41.8
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 6.1e-19 98.2 183 41.0
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.0e-18 95.9 166 44.0
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 4.0e-18 95.5 170 43.5
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 6.8e-18 94.7 169 43.2
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 6.8e-18 94.7 123 51.2
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 8.8e-18 94.4 166 44.0
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 1.5e-17 93.6 182 43.4
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.5e-17 93.6 184 38.6
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 2.6e-17 92.8 173 45.1
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 5.7e-17 91.7 128 54.7
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.7e-17 91.7 160 45.6
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.8e-17 90.9 174 42.5
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.8e-17 90.9 174 42.5
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 9.8e-17 90.9 171 40.4
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.3e-16 90.5 164 43.3
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 1.3e-16 90.5 160 44.4
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.8e-16 89.4 157 45.9
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 3.7e-16 89.0 122 49.2
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.8e-15 86.7 112 55.4
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.4e-15 86.3 114 53.5
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.4e-15 86.3 176 40.9
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 2.4e-15 86.3 160 41.9
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 3.1e-15 85.9 181 39.8
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 4.1e-15 85.5 176 40.9
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 5.4e-15 85.1 189 38.1
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 7.0e-15 84.7 168 41.7
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 7.0e-15 84.7 114 55.3
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 1.2e-14 84.0 172 38.4
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.2e-14 84.0 204 37.3
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 1.6e-14 83.6 193 37.3
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 1.6e-14 83.6 176 38.1
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.0e-14 83.2 167 41.3
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 7.7e-14 81.3 179 38.5
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.0e-13 80.9 204 38.2
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 2.9e-13 79.3 114 48.2
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.9e-13 79.3 205 37.6
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 3.8e-13 79.0 166 39.8
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 3.8e-13 79.0 192 38.0
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 5.0e-13 78.6 146 37.7
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 6.5e-13 78.2 182 36.8
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 8.5e-13 77.8 186 40.3
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.1e-12 77.4 170 37.6
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.9e-12 76.6 201 36.8
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.9e-12 76.6 201 36.8
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.9e-12 76.6 200 35.5
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.5e-12 76.3 153 39.9
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 3.2e-12 75.9 153 40.5
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 4.2e-12 75.5 148 41.9
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 5.5e-12 75.1 115 47.0
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 5.5e-12 75.1 201 36.3
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 5.5e-12 75.1 200 37.5
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 5.5e-12 75.1 201 36.3
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 5.5e-12 75.1 171 37.4
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 7.2e-12 74.7 155 33.5
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 9.5e-12 74.3 195 36.9
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 1.2e-11 73.9 171 36.8
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.6e-11 73.6 179 37.4
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 2.7e-11 72.8 99 50.5
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 3.6e-11 72.4 156 34.6
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.0e-10 70.9 95 52.6
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.8e-10 70.1 131 41.2
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 2.3e-10 69.7 205 35.1
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.0e-10 68.9 131 40.5
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 4.0e-10 68.9 159 38.4
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 5.2e-10 68.6 171 37.4
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 5.2e-10 68.6 197 34.5
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 6.8e-10 68.2 178 36.0
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 1.2e-09 67.4 154 35.7
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.2e-09 67.4 132 40.2
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.2e-09 67.4 132 40.2
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.4e-09 65.9 131 39.7
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 7.5e-09 64.7 125 40.0
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.3e-08 63.9 79 50.6
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.9e-08 62.0 111 42.3
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 6.3e-08 61.6 147 40.1
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.1e-07 60.8 127 38.6
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.8e-07 60.1 195 31.3
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 2.4e-07 59.7 84 47.6
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 2.4e-07 59.7 222 31.5
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 2.7e-06 56.2 178 29.8


User provided reference genes

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