Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0278111 Helianthus annuus HOM05D002037 ORTHO05D005586 4.9e-188 661.0 339 100.0
HanXRQChr11g0330611 Helianthus annuus HOM05D002037 ORTHO05D005586 4.9e-188 661.0 339 100.0
HanXRQChr10g0278011 Helianthus annuus HOM05D002037 ORTHO05D005586 3.7e-111 405.6 281 80.8
ECA248G2210 Erigeron canadensis HOM05D002037 ORTHO05D005586 5.2e-105 385.2 318 68.6
ECA234G1135 Erigeron canadensis HOM05D002037 ORTHO05D005586 1.3e-103 380.6 309 69.3
Lsat_1_v5_gn_5_164581 Lactuca sativa HOM05D002037 ORTHO05D005586 4.6e-101 372.1 292 70.9
Peaxi162Scf00896g00012 Petunia axillaris HOM05D002037 ORTHO05D005586 4.3e-99 365.5 281 71.5
Migut.H01099 Erythranthe guttata HOM05D002037 ORTHO05D005586 7.3e-99 364.8 299 66.6
Solyc11g005620.1 Solanum lycopersicum HOM05D002037 ORTHO05D005586 7.3e-99 364.8 281 71.5
Sopen11g001580 Solanum pennellii HOM05D002037 ORTHO05D005586 7.3e-99 364.8 281 71.5
Nitab4.5_0000320g0090 Nicotiana tabacum HOM05D002037 ORTHO05D005586 2.1e-98 363.2 281 71.2
Peaxi162Scf00178g00004 Petunia axillaris HOM05D002037 ORTHO05D005586 2.1e-98 363.2 281 71.2
CAN.G135.28 Capsicum annuum HOM05D002037 ORTHO05D005586 2.8e-98 362.8 280 70.7
PGSC0003DMG400003981 Solanum tuberosum HOM05D002037 ORTHO05D005586 2.8e-98 362.8 294 68.7
Nitab4.5_0006112g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005586 4.7e-98 362.1 281 70.8
Lj8A3T12 Lonicera japonica HOM05D002037 ORTHO05D005586 2.4e-97 359.8 297 66.0
MSTRG.23424 Avicennia marina HOM05D002037 ORTHO05D005586 9.0e-97 357.8 295 67.8
Oeu019002.1 Olea europaea HOM05D002037 ORTHO05D005586 2.0e-96 356.7 279 69.5
PSO063G5534 Papaver somniferum HOM05D002037 ORTHO05D005586 2.2e-95 353.2 370 58.1
CSS0019677 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005586 4.9e-95 352.1 280 67.5
Oeu048127.1 Olea europaea HOM05D002037 ORTHO05D005586 8.4e-95 351.3 296 65.9
Rhsim01G0105900 Rhododendron simsii HOM05D002037 ORTHO05D005586 5.4e-94 348.6 294 65.3
SalBow6G1621 Salvia bowleyana HOM05D002037 ORTHO05D005586 7.1e-94 348.2 281 66.9
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 7.1e-94 348.2 281 66.9
Dinv09453 Davidia involucrata HOM05D002037 ORTHO05D005586 9.3e-94 347.8 315 61.6
AUR62033316 Chenopodium quinoa HOM05D002037 ORTHO05D005586 1.6e-93 347.1 281 65.1
AUR62033343 Chenopodium quinoa HOM05D002037 ORTHO05D005586 1.6e-93 347.1 281 65.1
Migut.F01615 Erythranthe guttata HOM05D002037 ORTHO05D005586 3.5e-93 345.9 293 64.5
AUR62004328 Chenopodium quinoa HOM05D002037 ORTHO05D005586 4.6e-93 345.5 281 64.8
vmacro20743 Vaccinium macrocarpon HOM05D002037 ORTHO05D005586 6.0e-93 345.1 280 67.9
Ah.05g177540 Amaranthus hybridus HOM05D002037 ORTHO05D005586 2.3e-92 343.2 281 65.1
unitig_8.g3509 Utricularia gibba HOM05D002037 ORTHO05D005586 3.0e-92 342.8 279 68.5
TAR636G3119 Trochodendron aralioides HOM05D002037 ORTHO05D005586 5.1e-92 342.0 281 65.8
Rhsim07G0172400 Rhododendron simsii HOM05D002037 ORTHO05D005586 6.6e-92 341.7 280 66.4
MSTRG.2681 Avicennia marina HOM05D002037 ORTHO05D005586 8.7e-92 341.3 281 65.1
Ah.05g177530 Amaranthus hybridus HOM05D002037 ORTHO05D005586 1.5e-91 340.5 293 62.5
Aqoxy5G02379 Aquilegia oxysepala HOM05D002037 ORTHO05D005586 1.5e-91 340.5 317 59.0
DCAR_020609 Daucus carota HOM05D002037 ORTHO05D005586 1.9e-91 340.1 282 65.2
Rhsim07G0173100 Rhododendron simsii HOM05D002037 ORTHO05D005586 1.9e-91 340.1 280 66.1
RhsimUnG0016600 Rhododendron simsii HOM05D002037 ORTHO05D005586 1.9e-91 340.1 280 66.1
BcaC07g40389 Brassica carinata HOM05D002037 ORTHO05D005586 6.2e-90 335.1 326 59.8
BcaC02g09949 Brassica carinata HOM05D002037 ORTHO05D005586 1.1e-89 334.3 322 58.4
C04p34850 Brassica napus HOM05D002037 ORTHO05D005586 1.1e-89 334.3 322 58.4
BolC4t25037H Brassica oleracea HOM05D002037 ORTHO05D005586 1.1e-89 334.3 322 58.4
Hma1.2p1_1382F.1_g279370 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.1e-89 334.3 280 64.6
A04p03050 Brassica napus HOM05D002037 ORTHO05D005586 3.1e-89 332.8 322 59.0
Os04g0550500 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005586 4.0e-89 332.4 281 63.7
Eucgr.C02143 Eucalyptus grandis HOM05D002037 ORTHO05D005586 5.3e-89 332.0 285 63.5
BraA04t16028Z Brassica rapa HOM05D002037 ORTHO05D005586 6.9e-89 331.6 320 59.7
Lalb_Chr23g0268941 Lupinus albus HOM05D002037 ORTHO05D005586 1.2e-88 330.9 340 58.2
HPP92_022465 Vanilla planifolia HOM05D002037 ORTHO05D005586 1.2e-88 330.9 328 56.7
Zm00001eb186530 Zea mays HOM05D002037 ORTHO05D005586 1.2e-88 330.9 281 63.0
Aa31sc1187G30 Aethionema arabicum HOM05D002037 ORTHO05D005586 2.0e-88 330.1 316 59.8
Aa31sc992G40 Aethionema arabicum HOM05D002037 ORTHO05D005586 2.0e-88 330.1 316 59.8
GSVIVG01035586001 Vitis vinifera HOM05D002037 ORTHO05D005586 2.0e-88 330.1 280 63.9
Zm00001eb074610 Zea mays HOM05D002037 ORTHO05D005586 2.6e-88 329.7 281 63.7
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 5.8e-88 328.6 280 65.7
Nn1g00932 Nelumbo nucifera HOM05D002037 ORTHO05D005586 5.8e-88 328.6 280 64.3
Carub.0005s2440 Capsella rubella HOM05D002037 ORTHO05D005586 7.6e-88 328.2 326 57.7
Sc23g0004800 Simmondsia chinensis HOM05D002037 ORTHO05D005586 7.6e-88 328.2 281 62.6
BcaC07g40367 Brassica carinata HOM05D002037 ORTHO05D005586 9.9e-88 327.8 292 62.7
C08p33110 Brassica napus HOM05D002037 ORTHO05D005586 9.9e-88 327.8 292 62.7
BolC8t50911H Brassica oleracea HOM05D002037 ORTHO05D005586 9.9e-88 327.8 292 62.7
Prupe.1G463900 Prunus persica HOM05D002037 ORTHO05D005586 1.3e-87 327.4 280 64.3
A09p50430 Brassica napus HOM05D002037 ORTHO05D005586 1.7e-87 327.0 292 62.3
BraA09t40494Z Brassica rapa HOM05D002037 ORTHO05D005586 1.7e-87 327.0 292 62.3
Manes.10G056500 Manihot esculenta HOM05D002037 ORTHO05D005586 1.7e-87 327.0 357 55.2
CANSAT25G2792 Cannabis sativa HOM05D002037 ORTHO05D005586 4.9e-87 325.5 323 57.9
RcHm_v2.0_Chr6g0312541 Rosa chinensis HOM05D002037 ORTHO05D005586 4.9e-87 325.5 280 61.8
BcaB02g08309 Brassica carinata HOM05D002037 ORTHO05D005586 8.4e-87 324.7 321 58.3
MD08G1134500 Malus domestica HOM05D002037 ORTHO05D005586 8.4e-87 324.7 280 63.9
Lj1g0005088 Lotus japonicus HOM05D002037 ORTHO05D005586 1.1e-86 324.3 320 58.4
Sp5g05030 Schrenkiella parvula HOM05D002037 ORTHO05D005586 1.1e-86 324.3 292 61.3
Sed0016385 Sechium edule HOM05D002037 ORTHO05D005586 1.1e-86 324.3 280 62.1
CiPaw.07G216400 Carya illinoinensis HOM05D002037 ORTHO05D005586 1.4e-86 323.9 279 64.2
COL.COLO4_15466 Corchorus olitorius HOM05D002037 ORTHO05D005586 1.9e-86 323.6 287 62.7
AL5G39140 Arabidopsis lyrata HOM05D002037 ORTHO05D005586 2.4e-86 323.2 292 61.6
CARHR167790 Cardamine hirsuta HOM05D002037 ORTHO05D005586 2.4e-86 323.2 280 63.9
FAN24G2569 Fragaria x ananassa HOM05D002037 ORTHO05D005586 2.4e-86 323.2 280 62.1
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.4e-86 323.2 272 64.3
Potri.006G280100 Populus trichocarpa HOM05D002037 ORTHO05D005586 2.4e-86 323.2 287 62.0
AT3G57560 Arabidopsis thaliana HOM05D002037 ORTHO05D005586 3.2e-86 322.8 292 61.3
TWI14G0248 Tripterygium wilfordii HOM05D002037 ORTHO05D005586 4.2e-86 322.4 293 61.1
Cfa013231 Carpinus fangiana HOM05D002037 ORTHO05D005586 5.4e-86 322.0 278 62.9
Cc07_g17450 Coffea canephora HOM05D002037 ORTHO05D005586 5.4e-86 322.0 280 62.5
Duzib177G0635 Durio zibethinus HOM05D002037 ORTHO05D005586 5.4e-86 322.0 280 62.9
Manes.07G077700 Manihot esculenta HOM05D002037 ORTHO05D005586 7.1e-86 321.6 296 61.1
PGR102G0041 Punica granatum HOM05D002037 ORTHO05D005586 7.1e-86 321.6 280 62.9
QL12p030933 Quercus lobata HOM05D002037 ORTHO05D005586 7.1e-86 321.6 279 63.4
Thecc.08G172900 Theobroma cacao HOM05D002037 ORTHO05D005586 7.1e-86 321.6 289 61.6
FAN27G1718 Fragaria x ananassa HOM05D002037 ORTHO05D005586 9.3e-86 321.2 280 62.1
Medtr3g108460 Medicago truncatula HOM05D002037 ORTHO05D005586 9.3e-86 321.2 280 64.6
Thhalv10006042m.g Eutrema salsugineum HOM05D002037 ORTHO05D005586 1.6e-85 320.5 292 61.0
Potri.018G001600 Populus trichocarpa HOM05D002037 ORTHO05D005586 2.1e-85 320.1 283 62.2
Sed0022277 Sechium edule HOM05D002037 ORTHO05D005586 2.1e-85 320.1 280 61.4
ClCG08G012830 Citrullus lanatus HOM05D002037 ORTHO05D005586 2.7e-85 319.7 280 61.8
MELO3C011208.2 Cucumis melo HOM05D002037 ORTHO05D005586 2.7e-85 319.7 280 61.8
CsaV3_2G031570 Cucumis sativus L. HOM05D002037 ORTHO05D005586 2.7e-85 319.7 280 61.8
FvH4_2g30500 Fragaria vesca HOM05D002037 ORTHO05D005586 3.5e-85 319.3 280 61.4
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 4.6e-85 318.9 289 61.6
Phvul.009G099600 Phaseolus vulgaris HOM05D002037 ORTHO05D005586 7.9e-85 318.2 280 62.9
SEGI_35978 Sequoiadendron giganteum HOM05D002037 ORTHO05D005586 7.9e-85 318.2 278 61.5
Glyma.06G074900 Glycine max HOM05D002037 ORTHO05D005586 1.0e-84 317.8 280 63.2
SEGI_19958 Sequoiadendron giganteum HOM05D002037 ORTHO05D005586 1.0e-84 317.8 277 61.4
Cpa.g.sc6.178 Carica papaya HOM05D002037 ORTHO05D005586 1.3e-84 317.4 326 56.4
Haze_21661 Corylus avellana HOM05D002037 ORTHO05D005586 1.3e-84 317.4 278 62.2
Glyma.04G073800 Glycine max HOM05D002037 ORTHO05D005586 1.3e-84 317.4 287 62.0
Ciclev10008739m.g Citrus clementina HOM05D002037 ORTHO05D005586 1.8e-84 317.0 292 61.3
Gohir.A13G118600 Gossypium hirsutum HOM05D002037 ORTHO05D005586 2.3e-84 316.6 287 61.7
THA.LOC104802261 Tarenaya hassleriana HOM05D002037 ORTHO05D005586 3.0e-84 316.2 325 57.2
Gorai.013G137200 Gossypium raimondii HOM05D002037 ORTHO05D005586 3.9e-84 315.8 287 61.3
Gohir.D13G122400 Gossypium hirsutum HOM05D002037 ORTHO05D005586 5.1e-84 315.5 287 61.3
FAN20G1771 Fragaria x ananassa HOM05D002037 ORTHO05D005586 1.1e-83 314.3 280 60.7
Actinidia14156 Actinidia chinensis HOM05D002037 ORTHO05D005586 4.3e-83 312.4 256 66.8
TPR.G12308 Trifolium pratense HOM05D002037 ORTHO05D005586 5.6e-83 312.0 327 55.7
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 9.6e-83 311.2 277 61.4
Psat5g026120 Pisum sativum HOM05D002037 ORTHO05D005586 1.6e-82 310.5 280 62.9
Actinidia03569 Actinidia chinensis HOM05D002037 ORTHO05D005586 3.7e-82 309.3 271 64.6
ATR0782G017 Amborella trichopoda HOM05D002037 ORTHO05D005586 4.8e-82 308.9 312 54.5
SMO364G0053 Selaginella moellendorffii HOM05D002037 ORTHO05D005586 4.8e-82 308.9 279 58.8
Os02g0657600 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005586 2.4e-81 306.6 263 63.5
SGA_v2.0_scaffold231G43409 Striga asiatica HOM05D002037 ORTHO05D005586 6.9e-81 305.1 290 58.6
AagrBONN_evm.TU.Sc2ySwM_344.3516 Anthoceros agrestis HOM05D002037 ORTHO05D005586 9.0e-81 304.7 278 60.1
Duzib116G0244 Durio zibethinus HOM05D002037 ORTHO05D005586 1.5e-80 303.9 292 57.5
CBR_g84854 Chara braunii HOM05D002037 ORTHO05D005586 1.4e-78 297.4 276 58.3
Pp3c4_8600 Physcomitrium patens HOM05D002037 ORTHO05D005586 1.4e-78 297.4 278 57.6
MCO12G331 Micromonas commoda HOM05D002037 ORTHO05D005586 1.9e-78 297.0 281 56.6
CBR_g38963 Chara braunii HOM05D002037 ORTHO05D005586 7.9e-77 291.6 277 56.3
Cre01.g015000 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005586 1.3e-76 290.8 282 55.3
SHI12423 Sapria himalayana HOM05D002037 ORTHO05D005586 1.8e-76 290.4 282 58.2
Mapoly0031s0070 Marchantia polymorpha HOM05D002037 ORTHO05D005586 1.3e-74 284.3 278 57.2
Atru.chr7.2707 Acer truncatum HOM05D002037 ORTHO05D005586 5.5e-70 268.9 247 62.3
PRCOL_00003640 Prasinoderma coloniale HOM05D002037 ORTHO05D005586 1.6e-66 257.3 278 50.0
Hund19379 Selenicereus undatus HOM05D002037 ORTHO05D005586 1.2e-61 241.1 280 52.1
Sc23g0004440 Simmondsia chinensis HOM05D002037 ORTHO05D005586 3.0e-60 236.5 239 56.9
Haze_05098 Corylus avellana HOM05D002037 ORTHO05D005586 3.1e-49 199.9 192 57.8
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.6e-48 196.8 187 60.4
Haze_27393 Corylus avellana HOM05D002037 ORTHO05D005586 1.3e-47 194.5 291 41.6
Cc07_g16850 Coffea canephora HOM05D002037 ORTHO05D005586 2.5e-46 190.3 147 66.7
Cc00_g30070 Coffea canephora HOM05D002037 ORTHO05D005586 3.3e-43 179.9 197 54.8
Sc23g0004670 Simmondsia chinensis HOM05D002037 ORTHO05D005586 8.2e-42 175.3 194 54.1
RcHm_v2.0_Chr7g0238931 Rosa chinensis HOM05D002037 ORTHO05D005586 8.8e-36 155.2 190 47.4
Aqoxy6G01297 Aquilegia oxysepala HOM05D002037 ORTHO05D005586 2.0e-35 154.1 121 64.5
RcHm_v2.0_Chr3g0471221 Rosa chinensis HOM05D002037 ORTHO05D005586 1.7e-34 151.0 190 47.9
Haze_20257 Corylus avellana HOM05D002037 ORTHO05D005586 2.4e-33 147.1 103 73.8
CAN.G506.1 Capsicum annuum HOM05D002037 ORTHO05D005586 5.9e-32 142.5 221 46.2
RcHm_v2.0_Chr6g0246551 Rosa chinensis HOM05D002037 ORTHO05D005586 7.7e-32 142.1 130 56.9
Sc23g0004780 Simmondsia chinensis HOM05D002037 ORTHO05D005586 1.2e-29 134.8 147 55.1
Sc23g0004610 Simmondsia chinensis HOM05D002037 ORTHO05D005586 4.0e-28 129.8 99 67.7
RcHm_v2.0_Chr6g0292021 Rosa chinensis HOM05D002037 ORTHO05D005586 9.8e-19 98.6 135 45.2
HanXRQChr15g0492511 Helianthus annuus HOM05D002037 ORTHO05D005586 1.8e-17 94.4 57 82.5
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 8.9e-12 75.5 189 33.3
Sc23g0004740 Simmondsia chinensis HOM05D002037 ORTHO05D005586 9.8e-11 72.0 61 62.3
Cre02.g144800 Chlamydomonas reinhardtii HOM05D003138 ORTHO05D003789 1.7e-07 61.2 344 21.2
CDE07G0037 Ceratophyllum demersum HOM05D003138 ORTHO05D003789 2.3e-07 60.8 287 25.4
SEGI_17498 Sequoiadendron giganteum HOM05D002037 ORTHO05D005586 5.0e-07 59.7 38 71.1
Thecc.03G146100 Theobroma cacao HOM05D002037 ORTHO05D005586 8.6e-07 58.9 120 44.2
CBR_g45391 Chara braunii HOM05D003138 ORTHO05D003789 2.5e-06 57.4 222 24.3
AUR62007523 Chenopodium quinoa HOM05D003138 ORTHO05D003789 7.3e-06 55.8 259 22.4
AagrBONN_evm.TU.Sc2ySwM_368.2478 Anthoceros agrestis HOM05D003138 ORTHO05D003789 9.5e-06 55.5 102 30.4
CiPaw.01G003700 Carya illinoinensis HOM05D003138 ORTHO05D003789 9.5e-06 55.5 207 23.2
Dinv26939 Davidia involucrata HOM05D003138 ORTHO05D003789 9.5e-06 55.5 263 22.1


User provided reference genes

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