Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 3.2e-65 251.5 119 100.0
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 2.1e-53 212.2 106 92.5
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 6.2e-53 210.7 106 92.5
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.8e-52 209.1 106 91.5
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 3.0e-47 191.8 106 81.1
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 3.0e-47 191.8 106 81.1
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 6.6e-47 190.7 106 80.2
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 6.6e-47 190.7 106 80.2
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.1e-46 189.9 106 78.3
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.1e-46 189.9 106 80.2
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 1.1e-46 189.9 106 80.2
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.5e-46 189.5 106 80.2
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.9e-46 189.1 106 79.2
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.9e-46 189.1 106 79.2
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.9e-46 189.1 106 79.2
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.9e-46 189.1 106 79.2
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.9e-46 189.1 106 80.2
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 2.5e-46 188.7 106 80.2
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 2.5e-46 188.7 106 79.2
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.5e-46 188.7 106 79.2
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.5e-46 188.7 106 79.2
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 2.5e-46 188.7 106 79.2
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 2.5e-46 188.7 106 78.3
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 3.3e-46 188.3 106 77.4
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 3.3e-46 188.3 106 79.2
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 3.3e-46 188.3 106 77.4
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 3.3e-46 188.3 106 79.2
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 3.3e-46 188.3 106 80.2
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 4.3e-46 188.0 106 79.2
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 4.3e-46 188.0 106 77.4
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.3e-46 188.0 106 79.2
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 5.6e-46 187.6 106 78.3
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 5.6e-46 187.6 106 79.2
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 5.6e-46 187.6 106 80.2
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 5.6e-46 187.6 106 79.2
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 7.3e-46 187.2 106 79.2
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 7.3e-46 187.2 106 78.3
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 7.3e-46 187.2 106 77.4
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 9.6e-46 186.8 106 78.3
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 1.3e-45 186.4 106 78.3
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 1.3e-45 186.4 106 80.2
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 1.6e-45 186.0 106 79.2
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.6e-45 186.0 106 78.3
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 2.1e-45 185.7 106 80.2
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.1e-45 185.7 106 78.3
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 2.8e-45 185.3 106 77.4
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 2.8e-45 185.3 106 78.3
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.6e-45 184.9 106 78.3
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.6e-45 184.9 106 78.3
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 3.6e-45 184.9 106 77.4
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 3.6e-45 184.9 106 77.4
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.6e-45 184.9 106 79.2
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 3.6e-45 184.9 106 79.2
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 4.8e-45 184.5 106 79.2
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 4.8e-45 184.5 106 78.3
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 4.8e-45 184.5 106 78.3
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 6.2e-45 184.1 106 76.4
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 8.1e-45 183.7 106 78.3
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 8.1e-45 183.7 106 74.5
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 8.1e-45 183.7 106 75.5
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 8.1e-45 183.7 106 76.4
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 1.1e-44 183.3 106 77.4
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 1.1e-44 183.3 106 77.4
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 1.1e-44 183.3 106 79.2
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 1.4e-44 183.0 106 78.3
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.4e-44 183.0 106 78.3
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 1.4e-44 183.0 106 78.3
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.4e-44 183.0 106 78.3
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 1.4e-44 183.0 106 77.4
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.4e-44 183.0 106 78.3
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.4e-44 183.0 106 77.4
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.8e-44 182.6 106 74.5
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 1.8e-44 182.6 106 73.6
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.8e-44 182.6 106 76.4
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 2.4e-44 182.2 106 77.4
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.4e-44 182.2 106 77.4
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 3.1e-44 181.8 106 77.4
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 3.1e-44 181.8 106 76.4
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 3.1e-44 181.8 106 77.4
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 4.0e-44 181.4 106 77.4
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 4.0e-44 181.4 106 76.4
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 4.0e-44 181.4 106 77.4
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 4.0e-44 181.4 106 77.4
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 5.3e-44 181.0 106 76.4
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 6.9e-44 180.6 106 76.4
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 6.9e-44 180.6 106 75.5
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 6.9e-44 180.6 106 74.5
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.2e-43 179.9 106 77.4
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 1.5e-43 179.5 106 75.5
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 2.0e-43 179.1 106 75.5
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.6e-43 178.7 106 76.4
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 2.6e-43 178.7 106 76.4
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 3.4e-43 178.3 106 74.5
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 4.5e-43 177.9 106 76.4
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 7.6e-43 177.2 106 74.5
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.3e-42 176.4 106 75.5
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.3e-42 176.4 106 75.5
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.3e-42 176.4 106 75.5
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.3e-42 176.4 106 75.5
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.3e-42 176.4 106 72.6
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.3e-42 176.4 106 72.6
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 2.2e-42 175.6 106 74.5
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 2.2e-42 175.6 89 88.8
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 2.2e-42 175.6 106 73.6
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 2.2e-42 175.6 106 76.4
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 2.9e-42 175.3 106 74.5
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 8.4e-42 173.7 106 73.6
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.2e-40 169.9 107 70.1
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.2e-40 169.9 140 60.7
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 2.7e-40 168.7 106 68.9
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 6.0e-40 167.5 106 69.8
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 6.0e-40 167.5 106 71.7
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 7.9e-40 167.2 106 67.9
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.3e-39 165.6 106 66.0
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 3.0e-39 165.2 106 69.8
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 3.3e-38 161.8 106 67.0
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 4.3e-38 161.4 106 66.0
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 1.3e-37 159.8 106 67.0
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 1.3e-37 159.8 132 61.4
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 1.6e-37 159.5 93 76.3
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.4e-36 155.6 105 64.8
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.9e-33 146.0 154 50.6
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 9.6e-30 133.7 70 84.3
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 1.6e-29 132.9 199 39.7
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 9.0e-28 127.1 106 53.8
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.2e-27 126.7 106 53.8
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 3.4e-27 125.2 70 77.1
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.7e-26 122.9 89 65.2
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 2.7e-24 115.5 60 90.0
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.3e-21 106.7 106 51.9
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 1.2e-16 90.1 66 60.6
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 7.9e-16 87.4 53 75.5
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 1.0e-10 70.5 47 61.7
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 2.9e-10 68.9 116 38.8
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.8e-07 59.7 35 71.4
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.3e-07 59.3 35 74.3
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 5.1e-07 58.2 36 72.2
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 8.8e-07 57.4 35 68.6
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.0e-06 56.2 60 50.0
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 3.3e-06 55.5 35 65.7


User provided reference genes

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