Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 1.1e-150 536.6 258 100.0
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 4.2e-115 418.3 223 89.7
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.3e-111 404.4 223 85.7
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 9.2e-110 400.6 222 84.7
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 1.6e-93 346.7 223 73.5
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 5.6e-91 338.2 228 71.5
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 2.6e-88 329.3 226 69.5
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.3e-87 327.0 232 68.1
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.9e-87 325.9 223 67.7
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.9e-87 325.9 220 70.9
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.1e-86 323.9 226 69.9
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.1e-86 323.9 223 70.4
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.1e-86 323.9 229 68.6
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.1e-86 323.9 225 69.3
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.9e-86 323.2 223 68.2
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 2.4e-86 322.8 223 69.5
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 2.4e-86 322.8 221 67.4
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 5.4e-86 321.6 226 69.5
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 7.1e-86 321.2 225 68.4
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 9.2e-86 320.9 225 69.3
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 9.2e-86 320.9 223 68.2
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.2e-85 320.5 227 67.0
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 1.2e-85 320.5 224 69.6
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 1.6e-85 320.1 226 67.7
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.6e-85 320.1 228 68.0
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 2.7e-85 319.3 224 68.3
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.7e-85 319.3 224 68.8
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 3.5e-85 318.9 223 68.2
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 6.0e-85 318.2 223 67.7
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 6.0e-85 318.2 223 67.7
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 6.0e-85 318.2 231 66.7
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 6.0e-85 318.2 227 67.0
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 7.8e-85 317.8 228 67.1
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 7.8e-85 317.8 223 67.7
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 1.0e-84 317.4 224 67.4
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 1.0e-84 317.4 223 68.2
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.3e-84 317.0 223 67.3
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.7e-84 316.6 223 67.3
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.7e-84 316.6 228 67.1
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 2.3e-84 316.2 223 67.3
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.3e-84 316.2 227 66.5
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 3.0e-84 315.8 223 66.4
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 3.0e-84 315.8 226 67.3
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 3.9e-84 315.5 231 62.8
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 3.9e-84 315.5 231 66.7
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 5.1e-84 315.1 224 67.4
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 6.6e-84 314.7 223 67.3
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 6.6e-84 314.7 223 67.7
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.6e-84 314.7 223 67.3
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 6.6e-84 314.7 224 67.9
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 1.5e-83 313.5 223 66.8
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.5e-83 312.8 223 66.8
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.5e-83 312.8 254 61.8
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 5.6e-83 311.6 223 65.9
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 7.3e-83 311.2 223 65.0
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 7.3e-83 311.2 223 66.8
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.2e-82 310.5 223 66.8
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.2e-82 310.5 223 66.4
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 1.2e-82 310.5 231 61.9
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.2e-82 310.5 225 65.8
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 1.6e-82 310.1 224 65.6
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 1.6e-82 310.1 223 66.8
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 2.1e-82 309.7 221 67.0
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 2.1e-82 309.7 223 66.8
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 2.8e-82 309.3 227 66.5
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 2.8e-82 309.3 223 65.9
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 2.8e-82 309.3 252 61.5
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 3.6e-82 308.9 223 66.4
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.6e-82 308.9 224 66.5
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 4.7e-82 308.5 223 65.0
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 4.7e-82 308.5 223 65.9
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 6.2e-82 308.1 223 65.0
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 2.4e-81 306.2 223 64.1
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.4e-81 306.2 224 65.6
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 3.1e-81 305.8 223 65.0
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.1e-81 305.8 223 65.0
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 3.1e-81 305.8 224 65.6
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.0e-81 305.4 223 65.0
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 5.2e-81 305.1 232 63.4
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 5.2e-81 305.1 223 65.0
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 6.8e-81 304.7 223 65.0
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 8.9e-81 304.3 223 65.0
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 8.9e-81 304.3 223 65.0
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.0e-80 303.1 228 64.0
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 2.6e-80 302.8 223 64.6
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 2.6e-80 302.8 223 63.7
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 5.8e-80 301.6 230 60.9
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 5.8e-80 301.6 223 64.1
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 7.6e-80 301.2 223 64.1
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 9.9e-80 300.8 223 63.2
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.3e-79 300.4 228 62.7
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.3e-79 300.4 228 62.7
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.3e-79 300.4 228 62.7
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 1.3e-79 300.4 223 64.6
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 2.2e-79 299.7 225 61.8
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 2.2e-79 299.7 223 62.8
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 2.9e-79 299.3 223 63.7
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 4.9e-79 298.5 223 64.6
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 4.9e-79 298.5 223 65.0
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 1.9e-78 296.6 225 64.0
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 3.2e-78 295.8 223 61.9
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 4.2e-78 295.4 257 59.1
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 7.1e-78 294.7 223 61.9
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 1.0e-76 290.8 239 59.4
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 4.3e-75 285.4 224 60.3
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.1e-73 280.8 200 64.5
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 3.1e-73 279.3 198 66.7
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 4.0e-73 278.9 204 66.7
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 2.6e-72 276.2 227 59.5
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 3.4e-72 275.8 233 57.1
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 9.9e-72 274.2 225 57.8
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 9.9e-72 274.2 199 67.3
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 6.4e-71 271.6 227 59.0
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 7.1e-70 268.1 227 56.8
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 1.7e-68 263.5 223 53.4
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 3.9e-68 262.3 223 55.6
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 5.6e-67 258.5 195 61.0
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 4.5e-64 248.8 331 42.6
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 1.2e-61 240.7 252 53.6
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 4.6e-61 238.8 182 61.5
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 6.7e-60 235.0 224 55.8
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.4e-56 222.6 195 52.8
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.4e-54 217.2 137 73.0
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 7.4e-51 204.9 174 54.6
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 1.8e-49 200.3 203 47.8
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 5.9e-48 195.3 220 45.5
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 3.5e-45 186.0 118 72.0
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 3.7e-42 176.0 111 73.0
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 5.3e-41 172.2 112 70.5
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 5.9e-24 115.5 89 64.0
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 1.0e-23 114.8 60 90.0
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 2.5e-22 110.2 176 38.6
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 6.7e-20 102.1 219 32.4
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 2.9e-15 86.7 53 73.6
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.9e-14 84.0 43 86.0
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 7.2e-14 82.0 54 63.0
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.1e-13 80.5 78 53.8
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.6e-11 73.6 60 53.3
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 4.2e-06 56.2 36 69.4


User provided reference genes

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