Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 4.7e-213 744.2 361 100.0
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 4.0e-188 661.4 358 88.5
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.7e-186 656.0 361 86.4
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 2.5e-158 562.4 359 74.4
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.3e-154 550.1 354 71.5
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 2.2e-154 549.3 364 71.4
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 8.5e-154 547.4 368 70.7
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.2e-152 543.5 357 70.9
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 6.1e-152 541.2 361 71.2
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 6.1e-152 541.2 359 71.9
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 7.9e-152 540.8 361 71.2
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 7.9e-152 540.8 359 70.2
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 1.4e-151 540.0 361 71.2
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 3.0e-151 538.9 359 70.8
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 3.9e-151 538.5 363 70.8
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 6.7e-151 537.7 361 70.9
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 2.0e-150 536.2 359 70.8
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 5.7e-150 534.6 359 69.9
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 7.4e-150 534.3 362 69.9
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 3.7e-149 531.9 362 69.3
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 3.7e-149 531.9 362 71.0
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 4.8e-149 531.6 362 70.4
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 4.8e-149 531.6 361 69.8
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 4.8e-149 531.6 357 69.2
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 6.3e-149 531.2 367 68.9
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 6.3e-149 531.2 348 72.4
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 8.2e-149 530.8 361 69.3
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 8.2e-149 530.8 358 70.4
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 1.4e-148 530.0 360 69.4
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.4e-148 530.0 367 68.9
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 2.4e-148 529.3 352 70.5
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 3.1e-148 528.9 360 69.2
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 7.0e-148 527.7 360 70.3
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 7.0e-148 527.7 360 69.4
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 7.0e-148 527.7 365 66.8
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 7.0e-148 527.7 361 69.5
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 9.1e-148 527.3 360 69.4
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.0e-147 526.2 392 66.1
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 2.6e-147 525.8 360 70.0
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 2.6e-147 525.8 360 70.0
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 2.6e-147 525.8 358 70.4
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.6e-147 525.8 359 69.9
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 3.5e-147 525.4 356 70.2
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 3.5e-147 525.4 361 68.7
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 4.5e-147 525.0 360 69.2
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 4.5e-147 525.0 362 70.2
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 7.7e-147 524.2 359 69.6
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 1.0e-146 523.9 360 69.2
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.0e-146 523.9 364 67.9
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.0e-146 523.9 359 68.5
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 1.3e-146 523.5 362 69.1
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.2e-146 522.7 356 71.1
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 2.2e-146 522.7 357 67.8
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 2.9e-146 522.3 359 68.5
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 2.9e-146 522.3 361 69.8
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 3.8e-146 521.9 356 68.8
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 3.8e-146 521.9 358 68.4
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 5.0e-146 521.5 358 67.9
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 5.0e-146 521.5 368 65.5
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 8.5e-146 520.8 360 69.4
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 8.5e-146 520.8 360 68.3
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 8.5e-146 520.8 361 67.6
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 1.1e-145 520.4 359 68.8
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.1e-145 520.4 356 69.4
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.1e-145 520.4 357 68.3
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.9e-145 519.6 360 68.1
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.9e-145 519.6 356 68.5
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 3.2e-145 518.8 360 69.4
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 3.2e-145 518.8 359 68.0
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.2e-145 518.5 364 66.5
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.2e-145 518.5 364 66.5
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.5e-145 518.1 364 66.5
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 5.5e-145 518.1 359 68.2
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 5.5e-145 518.1 359 68.2
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 7.2e-145 517.7 360 68.9
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 9.4e-145 517.3 359 68.2
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 9.4e-145 517.3 360 68.9
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-144 516.9 359 68.0
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.6e-144 516.5 355 68.5
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 2.1e-144 516.2 389 64.3
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 3.6e-144 515.4 366 68.9
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 3.6e-144 515.4 362 65.5
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 4.7e-144 515.0 359 68.8
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 6.1e-144 514.6 358 67.0
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 8.0e-144 514.2 357 67.2
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 1.0e-143 513.8 359 68.0
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 2.3e-143 512.7 356 68.5
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 2.3e-143 512.7 357 67.8
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 8.8e-143 510.8 357 67.8
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 8.8e-143 510.8 358 67.0
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 1.5e-142 510.0 366 66.4
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 2.6e-142 509.2 356 66.3
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 5.7e-142 508.1 356 67.1
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 9.7e-142 507.3 357 66.7
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 4.8e-141 505.0 357 65.3
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.2e-139 500.4 357 65.0
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.2e-139 500.4 413 61.5
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 2.7e-139 499.2 361 65.4
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 5.0e-138 495.0 333 72.1
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 2.5e-137 492.7 376 64.1
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 3.6e-136 488.8 440 57.3
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 1.4e-135 486.9 359 65.5
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 1.2e-134 483.8 360 64.2
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 7.5e-134 481.1 451 54.5
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 1.3e-133 480.3 454 54.8
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 1.7e-133 479.9 360 63.9
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.7e-131 472.6 360 60.6
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 3.5e-131 472.2 352 62.8
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 2.1e-128 463.0 363 59.5
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 3.0e-127 459.1 355 58.9
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 3.4e-126 455.7 357 60.2
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 4.1e-124 448.7 385 60.0
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 7.0e-116 421.4 520 44.2
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 5.9e-115 418.3 223 89.7
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.3e-114 417.2 273 70.7
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 2.5e-113 412.9 345 59.1
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.5e-113 412.9 383 52.5
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 3.6e-112 409.1 270 73.3
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 2.7e-107 392.9 254 71.3
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 1.8e-103 380.2 345 58.3
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 1.5e-102 377.1 273 64.8
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 3.4e-94 349.4 375 46.7
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 3.8e-93 345.9 347 49.6
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 2.3e-90 336.7 181 88.4
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.0e-90 336.3 303 54.1
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 5.4e-76 288.9 198 68.2
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 3.0e-66 256.5 270 48.9
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 6.2e-64 248.8 179 65.4
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 8.1e-64 248.4 158 72.2
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.4e-63 246.9 178 65.7
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.2e-61 240.4 349 40.7
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 7.1e-60 235.3 182 59.9
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 1.4e-52 211.1 106 92.5
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 1.2e-51 208.0 174 55.7
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 6.1e-43 179.1 111 73.0
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 5.0e-37 159.5 177 49.2
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 3.2e-28 130.2 91 65.9
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.6e-27 127.9 105 61.0
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 5.7e-25 119.4 89 66.3
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 2.0e-22 110.9 153 45.1
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 2.2e-16 90.9 77 54.5
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 2.8e-16 90.5 69 62.3
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 3.7e-16 90.1 62 64.5
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.4e-15 87.4 54 66.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.9e-13 80.5 81 53.1
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 5.0e-13 79.7 303 25.4
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 7.2e-12 75.9 47 68.1
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 2.3e-10 70.9 69 52.2
Gorai.004G196100 Gossypium raimondii HOM05D001438 ORTHO05D001336 1.7e-08 64.7 215 26.0
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 6.3e-08 62.8 76 42.1
Ca_18304_v3 Cicer arietinum L. HOM05D000206 ORTHO05D000232 2.7e-06 57.4 280 21.4


User provided reference genes

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