Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.7e-240 835.5 401 100.0
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.6e-190 669.5 360 86.1
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 2.9e-155 552.4 358 71.8
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.5e-154 550.1 352 71.9
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 4.7e-153 545.0 357 70.9
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 7.5e-151 537.7 352 69.0
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 2.0e-148 529.6 358 69.6
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 4.5e-148 528.5 363 70.2
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 7.7e-148 527.7 360 68.3
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.0e-147 527.3 362 69.1
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.3e-147 526.9 358 69.6
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 1.7e-147 526.6 359 68.2
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 2.2e-147 526.2 359 68.2
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 2.2e-147 526.2 355 69.0
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 2.9e-147 525.8 363 68.6
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 2.9e-147 525.8 362 69.6
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 5.0e-147 525.0 362 69.6
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 6.5e-147 524.6 374 66.3
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 1.1e-146 523.9 361 67.9
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 3.2e-146 522.3 359 67.4
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 4.2e-146 521.9 352 69.0
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 4.2e-146 521.9 367 66.5
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 4.2e-146 521.9 362 68.5
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.2e-145 520.4 355 68.7
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.2e-145 520.4 352 68.8
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 3.6e-145 518.8 358 67.3
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 3.6e-145 518.8 356 68.5
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 1.8e-144 516.5 357 68.6
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 1.8e-144 516.5 360 68.1
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 4.0e-144 515.4 352 67.9
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 4.0e-144 515.4 352 68.8
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 4.0e-144 515.4 355 68.2
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 4.0e-144 515.4 356 67.7
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 5.2e-144 515.0 360 67.2
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 5.2e-144 515.0 357 69.2
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 5.2e-144 515.0 355 67.9
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.2e-143 513.8 363 65.8
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.5e-143 513.5 358 67.0
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 1.5e-143 513.5 355 67.0
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 2.6e-143 512.7 353 67.1
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 5.7e-143 511.5 382 63.1
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 5.7e-143 511.5 392 62.8
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 9.8e-143 510.8 352 66.5
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 9.8e-143 510.8 352 66.2
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 9.8e-143 510.8 352 68.2
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 9.8e-143 510.8 354 67.8
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.3e-142 510.4 356 66.9
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 1.7e-142 510.0 355 67.0
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 2.2e-142 509.6 358 66.8
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.8e-142 509.2 354 67.5
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 3.7e-142 508.8 359 67.1
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 3.7e-142 508.8 358 65.6
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.7e-142 508.8 355 66.5
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 3.7e-142 508.8 352 66.5
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 6.3e-142 508.1 361 66.8
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 6.3e-142 508.1 360 68.1
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 1.1e-141 507.3 355 66.2
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.1e-141 507.3 365 66.0
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.8e-141 506.5 352 67.6
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.8e-141 506.5 352 67.6
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.8e-141 506.5 355 66.2
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.8e-141 506.5 352 66.2
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.4e-141 506.1 355 65.6
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 2.4e-141 506.1 353 66.6
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 4.1e-141 505.4 358 65.9
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 9.2e-141 504.2 363 65.8
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.6e-140 503.4 355 66.5
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 1.6e-140 503.4 352 66.8
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.6e-140 503.4 360 64.2
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 2.0e-140 503.1 352 67.3
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 2.0e-140 503.1 355 66.2
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.0e-140 503.1 353 67.7
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 2.7e-140 502.7 343 71.7
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.7e-140 502.7 356 67.7
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 4.5e-140 501.9 353 67.4
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 4.5e-140 501.9 355 66.2
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 5.9e-140 501.5 355 66.2
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 5.9e-140 501.5 352 67.0
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 7.7e-140 501.1 355 65.6
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.3e-139 500.4 357 66.7
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 2.3e-139 499.6 358 66.5
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 2.9e-139 499.2 359 67.1
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 3.8e-139 498.8 352 66.2
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 5.0e-139 498.4 352 67.0
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 6.6e-139 498.0 381 63.3
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 6.6e-139 498.0 352 66.5
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 8.6e-139 497.7 358 66.5
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 8.6e-139 497.7 352 64.2
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 1.5e-138 496.9 360 63.3
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.5e-138 496.1 358 64.8
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.5e-138 496.1 358 64.8
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.5e-138 496.1 358 64.8
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 3.3e-138 495.7 352 65.1
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 4.3e-138 495.4 352 65.1
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 2.8e-137 492.7 352 64.8
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 6.1e-137 491.5 360 65.0
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 8.9e-136 487.6 331 68.9
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 7.0e-133 478.0 367 61.6
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 9.2e-133 477.6 353 64.3
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.6e-132 476.9 414 58.0
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 2.0e-132 476.5 363 61.7
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 8.6e-131 471.1 368 59.8
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 4.3e-130 468.8 349 63.6
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.7e-129 465.3 447 52.6
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.4e-128 463.8 439 54.7
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 1.8e-128 463.4 356 61.2
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 4.0e-128 462.2 449 52.8
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 1.7e-126 456.8 356 60.1
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.2e-126 456.4 364 58.2
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 2.0e-124 449.9 352 58.0
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 4.6e-124 448.7 354 57.1
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 1.0e-123 447.6 356 59.3
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.2e-118 429.9 527 44.2
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 8.3e-118 427.9 384 57.8
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 3.0e-115 419.5 274 70.1
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 1.8e-112 410.2 275 70.2
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 4.1e-109 399.1 344 57.8
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 2.1e-108 396.7 255 70.6
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.3e-107 393.3 382 48.7
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 3.3e-98 362.8 271 62.4
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.1e-92 343.6 356 48.9
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 7.9e-92 341.7 355 47.6
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.6e-87 326.6 300 51.0
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 4.5e-87 325.9 221 67.4
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 2.5e-77 293.5 179 76.0
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.0e-71 273.9 196 63.3
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 1.5e-63 247.7 266 46.6
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.7e-62 244.2 174 66.7
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.2e-62 243.8 160 71.2
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 3.2e-61 240.0 155 71.6
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 5.5e-61 239.2 180 60.0
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.2e-60 238.0 349 40.1
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 8.8e-51 205.3 175 56.0
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 2.5e-45 187.2 106 78.3
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 9.7e-42 175.3 110 68.2
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 1.6e-36 157.9 173 50.3
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 3.0e-27 127.1 92 62.0
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.5e-26 124.8 106 60.4
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 5.0e-22 109.8 148 41.9
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 8.6e-22 109.0 86 61.6
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 6.4e-17 92.8 58 63.8
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.7e-15 87.4 54 66.7
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 4.6e-15 86.7 77 54.5
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 5.9e-15 86.3 62 64.5
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 4.3e-13 80.1 227 27.3
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.8e-12 77.4 81 45.7
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 4.0e-11 73.6 47 68.1
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 9.2e-08 62.4 74 43.2
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 2.0e-07 61.2 44 63.6
Oeu000043.1 Olea europaea HOM05D000206 ORTHO05D000232 4.6e-07 60.1 258 24.0
Migut.B01562 Erythranthe guttata HOM05D000206 ORTHO05D000232 1.7e-06 58.2 302 23.5
Psat5g028000 Pisum sativum HOM05D000206 ORTHO05D000232 5.0e-06 56.6 189 27.0


User provided reference genes

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