Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0187811 Helianthus annuus HOM05D000116 ORTHO05D000703 2.1e-43 178.7 96 100.0
HanXRQChr11g0330531 Helianthus annuus HOM05D000116 ORTHO05D000703 2.1e-43 178.7 96 100.0
HanXRQChr14g0443081 Helianthus annuus HOM05D000116 ORTHO05D000703 2.1e-43 178.7 96 100.0
HanXRQChr16g0509591 Helianthus annuus HOM05D000116 ORTHO05D000703 2.1e-43 178.7 96 100.0
HanXRQChr06g0166961 Helianthus annuus HOM05D000116 ORTHO05D000703 3.6e-43 177.9 96 99.0
HanXRQChr13g0424951 Helianthus annuus HOM05D000116 ORTHO05D000703 8.0e-43 176.8 93 100.0
HanXRQChr10g0289101 Helianthus annuus HOM05D000116 ORTHO05D000703 4.0e-42 174.5 96 97.9
HanXRQChr05g0142181 Helianthus annuus HOM05D000116 ORTHO05D000703 3.7e-24 114.8 70 84.3
ECA236G4191 Erigeron canadensis HOM05D000116 ORTHO05D000703 3.6e-19 98.2 73 74.0
Lsat_1_v5_gn_8_68860 Lactuca sativa HOM05D000116 ORTHO05D000703 8.9e-18 93.6 71 69.0
Nn5g28750 Nelumbo nucifera HOM05D000116 ORTHO05D000703 6.0e-14 80.9 71 57.7
DCAR_020140 Daucus carota HOM05D000116 ORTHO05D000703 7.8e-14 80.5 75 54.7
A10p19510 Brassica napus HOM05D000116 ORTHO05D000703 1.7e-13 79.3 72 58.3
BraA10t44027Z Brassica rapa HOM05D000116 ORTHO05D000703 1.7e-13 79.3 72 58.3
C09p55710 Brassica napus HOM05D000116 ORTHO05D000703 2.3e-13 79.0 72 58.3
BolC9t58437H Brassica oleracea HOM05D000116 ORTHO05D000703 2.3e-13 79.0 72 58.3
CAN.G631.52 Capsicum annuum HOM05D000116 ORTHO05D000703 6.6e-13 77.4 50 72.0
MD16G1241300 Malus domestica HOM05D000116 ORTHO05D000703 6.6e-13 77.4 63 60.3
Prupe.1G068000 Prunus persica HOM05D000116 ORTHO05D000703 6.6e-13 77.4 65 56.9
PGSC0003DMG400008049 Solanum tuberosum HOM05D000116 ORTHO05D000703 8.6e-13 77.0 75 53.3
PGR044G0943 Punica granatum HOM05D000116 ORTHO05D000703 1.1e-12 76.6 45 75.6
AL6G32030 Arabidopsis lyrata HOM05D000116 ORTHO05D000703 1.5e-12 76.3 83 51.8
Migut.K00226 Erythranthe guttata HOM05D000116 ORTHO05D000703 1.5e-12 76.3 67 62.7
Nitab4.5_0002461g0050 Nicotiana tabacum HOM05D000116 ORTHO05D000703 1.5e-12 76.3 69 56.5
Solyc11g069860.3 Solanum lycopersicum HOM05D000116 ORTHO05D000703 1.5e-12 76.3 75 53.3
Sopen11g028420 Solanum pennellii HOM05D000116 ORTHO05D000703 1.5e-12 76.3 75 53.3
Aa31LG1G14170 Aethionema arabicum HOM05D000116 ORTHO05D000703 1.9e-12 75.9 53 66.0
RcHm_v2.0_Chr4g0398351 Rosa chinensis HOM05D000116 ORTHO05D000703 1.9e-12 75.9 59 59.3
Nitab4.5_0004479g0030 Nicotiana tabacum HOM05D000116 ORTHO05D000703 2.5e-12 75.5 69 56.5
GSVIVG01029260001 Vitis vinifera HOM05D000116 ORTHO05D000703 2.5e-12 75.5 48 70.8
MBI16_g09333_MAGBIO Magnolia biondii HOM05D007669 ORTHO05D009624 3.3e-12 75.1 72 52.8
CANSAT01G2935 Cannabis sativa HOM05D000116 ORTHO05D000703 4.3e-12 74.7 76 55.3
Ciclev10008911m.g Citrus clementina HOM05D006321 ORTHO05D007929 4.3e-12 74.7 74 55.4
FAN07G1391 Fragaria x ananassa HOM05D000116 ORTHO05D000703 4.3e-12 74.7 57 63.2
SalBow6G6504 Salvia bowleyana HOM05D000116 ORTHO05D000703 4.3e-12 74.7 73 58.9
CSS0010326 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D000703 5.6e-12 74.3 72 54.2
Carub.0006s1883 Capsella rubella HOM05D000116 ORTHO05D000703 5.6e-12 74.3 81 49.4
CSS0034533 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D000703 7.3e-12 73.9 72 54.2
CSS0046074 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D000703 7.3e-12 73.9 44 75.0
CARHR192310 Cardamine hirsuta HOM05D000116 ORTHO05D000703 7.3e-12 73.9 67 55.2
QL11p005610 Quercus lobata HOM05D000116 ORTHO05D000703 7.3e-12 73.9 52 63.5
Dinv25481 Davidia involucrata HOM05D000116 ORTHO05D000703 9.6e-12 73.6 46 71.7
BcaB08g36504 Brassica carinata HOM05D000116 ORTHO05D000703 1.2e-11 73.2 71 52.1
AUR62027444 Chenopodium quinoa HOM05D000116 ORTHO05D000703 1.2e-11 73.2 75 48.0
Aqoxy7G02536 Aquilegia oxysepala HOM05D000116 ORTHO05D000703 1.6e-11 72.8 71 52.1
AT5G20500 Arabidopsis thaliana HOM05D000116 ORTHO05D000703 1.6e-11 72.8 77 50.6
AUR62031257 Chenopodium quinoa HOM05D000116 ORTHO05D000703 1.6e-11 72.8 75 46.7
Oeu009079.1 Olea europaea HOM05D000116 ORTHO05D000703 2.1e-11 72.4 76 55.3
Sabra18G0113100 Salix brachista HOM05D000116 ORTHO05D000703 2.1e-11 72.4 70 58.6
BcaB05g22839 Brassica carinata HOM05D000116 ORTHO05D000703 2.8e-11 72.0 72 51.4
BcaC03g13768 Brassica carinata HOM05D000116 ORTHO05D000703 2.8e-11 72.0 72 51.4
BolC2t07044H Brassica oleracea HOM05D000116 ORTHO05D000703 2.8e-11 72.0 72 51.4
Cc06_g12910 Coffea canephora HOM05D000116 ORTHO05D000703 2.8e-11 72.0 51 62.7
FvH4_4g06520 Fragaria vesca HOM05D000116 ORTHO05D000703 2.8e-11 72.0 57 61.4
FAN12G0581 Fragaria x ananassa HOM05D000116 ORTHO05D000703 2.8e-11 72.0 57 61.4
Gohir.A08G081900 Gossypium hirsutum HOM05D000116 ORTHO05D000703 2.8e-11 72.0 66 51.5
Gohir.D08G091300 Gossypium hirsutum HOM05D000116 ORTHO05D000703 2.8e-11 72.0 66 51.5
PSO384G1252 Papaver somniferum HOM05D000116 ORTHO05D000703 2.8e-11 72.0 65 56.9
PSO713G0016 Papaver somniferum HOM05D000116 ORTHO05D000703 2.8e-11 72.0 65 56.9
Thecc.09G191800 Theobroma cacao HOM05D000116 ORTHO05D000703 2.8e-11 72.0 66 53.0
TWI32G0584 Tripterygium wilfordii HOM05D000116 ORTHO05D000703 2.8e-11 72.0 76 53.9
TWI32G1256 Tripterygium wilfordii HOM05D000116 ORTHO05D000703 2.8e-11 72.0 76 53.9
Potri.018G133400 Populus trichocarpa HOM05D000116 ORTHO05D000703 3.6e-11 71.6 70 57.1
vmacro13100 Vaccinium macrocarpon HOM05D000116 ORTHO05D000703 3.6e-11 71.6 84 50.0
CDE02G0394 Ceratophyllum demersum HOM05D000116 ORTHO05D000703 4.7e-11 71.2 63 55.6
FAN17G1888 Fragaria x ananassa HOM05D000116 ORTHO05D000703 6.2e-11 70.9 66 56.1
Gorai.004G096800 Gossypium raimondii HOM05D000116 ORTHO05D000703 6.2e-11 70.9 66 51.5
Oeu052801.1 Olea europaea HOM05D000116 ORTHO05D000703 6.2e-11 70.9 77 55.8
Sc18g0003900 Simmondsia chinensis HOM05D000116 ORTHO05D000703 6.2e-11 70.9 69 50.7
TPR.G32609 Trifolium pratense HOM05D000116 ORTHO05D000703 6.2e-11 70.9 60 58.3
CiPaw.07G200100 Carya illinoinensis HOM05D000116 ORTHO05D000703 8.1e-11 70.5 69 53.6
Psat1g142680 Pisum sativum HOM05D000116 ORTHO05D000703 8.1e-11 70.5 69 50.7
SGA_v2.0_scaffold17G07946 Striga asiatica HOM05D000116 ORTHO05D000703 8.1e-11 70.5 82 52.4
THA.LOC104811005 Tarenaya hassleriana HOM05D000116 ORTHO05D000703 8.1e-11 70.5 66 56.1
Atru.chr7.794 Acer truncatum HOM05D000116 ORTHO05D000703 1.1e-10 70.1 70 52.9
MSTRG.6244 Avicennia marina HOM05D000116 ORTHO05D000703 1.1e-10 70.1 70 54.3
unitig_744.g24144 Utricularia gibba HOM05D006370 ORTHO05D000703 1.1e-10 70.1 73 52.1
Ca_02145_v3 Cicer arietinum L. HOM05D000116 ORTHO05D000703 1.4e-10 69.7 65 52.3
Mapoly0004s0084 Marchantia polymorpha HOM05D000116 ORTHO05D000703 1.8e-10 69.3 63 54.0
Manes.06G000500 Manihot esculenta HOM05D000116 ORTHO05D000703 2.4e-10 68.9 75 49.3
Sed0012113 Sechium edule HOM05D000116 ORTHO05D000703 2.4e-10 68.9 70 50.0
Thhalv10014993m.g Eutrema salsugineum HOM05D000116 ORTHO05D000703 3.1e-10 68.6 85 50.6
COL.COLO4_30867 Corchorus olitorius HOM05D000116 ORTHO05D000703 4.0e-10 68.2 70 47.1
MELO3C017411.2 Cucumis melo HOM05D000116 ORTHO05D000703 4.0e-10 68.2 72 48.6
Lj6g0003697 Lotus japonicus HOM05D000116 ORTHO05D000703 4.0e-10 68.2 79 50.6
Pp3c18_5670 Physcomitrium patens HOM05D000116 ORTHO05D000703 4.0e-10 68.2 47 63.8
Sp6g23960 Schrenkiella parvula HOM05D000116 ORTHO05D000703 4.0e-10 68.2 72 48.6
HPP92_021960 Vanilla planifolia HOM05D000116 ORTHO05D000703 4.0e-10 68.2 83 48.2
ATR0580G076 Amborella trichopoda HOM05D000116 ORTHO05D000703 5.2e-10 67.8 46 63.0
Haze_22061 Corylus avellana HOM05D000116 ORTHO05D000703 5.2e-10 67.8 67 53.7
MBI14_g10153_MAGBIO Magnolia biondii HOM05D000116 ORTHO05D000703 5.2e-10 67.8 70 51.4
SEGI_00205 Sequoiadendron giganteum HOM05D000116 ORTHO05D000703 5.2e-10 67.8 60 51.7
AagrBONN_evm.TU.Sc2ySwM_362.2262 Anthoceros agrestis HOM05D000116 ORTHO05D000703 6.8e-10 67.4 68 48.5
A02p06270 Brassica napus HOM05D000116 ORTHO05D000703 8.9e-10 67.0 75 50.7
BNapus_Darmor_BZH_scaffold_38p01570 Brassica napus HOM05D000116 ORTHO05D000703 8.9e-10 67.0 75 50.7
BraA02t05575Z Brassica rapa HOM05D000116 ORTHO05D000703 8.9e-10 67.0 75 50.7
CBR_g18876 Chara braunii HOM05D000116 ORTHO05D000703 8.9e-10 67.0 61 52.5
Glyma.09G062300 Glycine max HOM05D000116 ORTHO05D000703 8.9e-10 67.0 66 54.5
HPP92_021995 Vanilla planifolia HOM05D000116 ORTHO05D000703 8.9e-10 67.0 81 49.4
Eucgr.C02279 Eucalyptus grandis HOM05D000116 ORTHO05D000703 1.2e-09 66.6 79 45.6
Glyma.15G168700 Glycine max HOM05D000116 ORTHO05D000703 1.2e-09 66.6 64 48.4
Medtr2g038560 Medicago truncatula HOM05D000116 ORTHO05D000703 1.5e-09 66.2 75 46.7
BcaB05g22845 Brassica carinata HOM05D000116 ORTHO05D000703 2.0e-09 65.9 67 52.2
Cfa013481 Carpinus fangiana HOM05D000116 ORTHO05D000703 2.0e-09 65.9 67 53.7
CsaV3_1G032050 Cucumis sativus L. HOM05D000116 ORTHO05D000703 2.0e-09 65.9 72 47.2
Sed0027181 Sechium edule HOM05D000116 ORTHO05D000703 2.6e-09 65.5 74 45.9
ClCG06G013850 Citrullus lanatus HOM05D000116 ORTHO05D000703 5.8e-09 64.3 74 44.6
Phvul.009G233500 Phaseolus vulgaris HOM05D000116 ORTHO05D000703 5.8e-09 64.3 64 48.4
VMungo1309G2563 Vigna mungo HOM05D000116 ORTHO05D000703 5.8e-09 64.3 65 53.8
BcaC04g19436 Brassica carinata HOM05D000116 ORTHO05D000703 7.6e-09 63.9 40 72.5
MELO3C017410.2 Cucumis melo HOM05D000116 ORTHO05D000703 7.6e-09 63.9 62 50.0
Lalb_Chr16g0377711 Lupinus albus HOM05D000116 ORTHO05D000703 9.9e-09 63.5 50 56.0
CsaV3_1G032060 Cucumis sativus L. HOM05D000116 ORTHO05D000703 1.3e-08 63.2 62 50.0
Cpa.g.sc115.53 Carica papaya HOM05D000116 ORTHO05D000703 1.7e-08 62.8 69 44.9
Zm00001eb389310 Zea mays HOM05D000116 ORTHO05D000703 2.2e-08 62.4 63 55.6
arahy.Tifrunner.gnm1.ann1.EL9HDY Arachis hypogaea HOM05D000116 ORTHO05D000703 2.9e-08 62.0 72 44.4
arahy.Tifrunner.gnm1.ann1.FXT8IT Arachis hypogaea HOM05D000116 ORTHO05D000703 2.9e-08 62.0 72 44.4
ClCG06G013860 Citrullus lanatus HOM05D000116 ORTHO05D000703 3.8e-08 61.6 60 50.0
SMO141G0116 Selaginella moellendorffii HOM05D000116 ORTHO05D000703 3.8e-08 61.6 65 50.8
HanXRQChr14g0441541 Helianthus annuus HOM05D000116 ORTHO05D000703 6.4e-08 60.8 50 54.0
Manes.01G141700 Manihot esculenta HOM05D000116 ORTHO05D000703 8.4e-08 60.5 46 56.5
Solyc02g084660.3 Solanum lycopersicum HOM05D000116 ORTHO05D000703 8.4e-08 60.5 67 46.3
Sopen02g029330 Solanum pennellii HOM05D000116 ORTHO05D000703 8.4e-08 60.5 67 46.3
ATR0661G034 Amborella trichopoda HOM05D000116 ORTHO05D000703 1.1e-07 60.1 50 54.0
Cpa.g.sc6.198 Carica papaya HOM05D000116 ORTHO05D000703 1.4e-07 59.7 55 54.5
FAN23G2891 Fragaria x ananassa HOM05D000116 ORTHO05D000703 1.4e-07 59.7 50 54.0
Gohir.A10G097300 Gossypium hirsutum HOM05D000116 ORTHO05D000703 1.4e-07 59.7 73 43.8
Lsat_1_v5_gn_2_78261 Lactuca sativa HOM05D000116 ORTHO05D000703 1.4e-07 59.7 46 52.2
PGSC0003DMG400003617 Solanum tuberosum HOM05D000116 ORTHO05D000703 1.4e-07 59.7 72 43.1
Thecc.01G024900 Theobroma cacao HOM05D000116 ORTHO05D000703 1.4e-07 59.7 83 44.6
FAN22G2123 Fragaria x ananassa HOM05D007669 ORTHO05D009624 1.9e-07 59.3 66 51.5
Nitab4.5_0012525g0030 Nicotiana tabacum HOM05D000116 ORTHO05D000703 1.9e-07 59.3 46 56.5
BraA09t36648Z Brassica rapa HOM05D000116 ORTHO05D000703 2.4e-07 58.9 74 41.9
CDE02G3390 Ceratophyllum demersum HOM05D000116 ORTHO05D000703 2.4e-07 58.9 67 47.8
Duzib187G0705 Durio zibethinus HOM05D000116 ORTHO05D000703 2.4e-07 58.9 68 45.6
Nitab4.5_0002266g0040 Nicotiana tabacum HOM05D000116 ORTHO05D000703 2.4e-07 58.9 46 54.3
Peaxi162Scf01274g00011 Petunia axillaris HOM05D000116 ORTHO05D000703 3.2e-07 58.5 50 52.0
Eucgr.J02390 Eucalyptus grandis HOM05D000116 ORTHO05D000703 4.2e-07 58.2 46 54.3
Medtr5g021090 Medicago truncatula HOM05D000116 ORTHO05D000703 4.2e-07 58.2 78 47.4
CAN.G358.15 Capsicum annuum HOM05D000116 ORTHO05D000703 5.4e-07 57.8 44 56.8
THA.LOC104821313 Tarenaya hassleriana HOM05D000116 ORTHO05D000703 5.4e-07 57.8 68 45.6
TPR.G351 Trifolium pratense HOM05D000116 ORTHO05D000703 5.4e-07 57.8 45 60.0
Gorai.011G099900 Gossypium raimondii HOM05D000116 ORTHO05D000703 7.1e-07 57.4 74 41.9
AT1G77370 Arabidopsis thaliana HOM05D000116 ORTHO05D000703 9.3e-07 57.0 65 46.2
BolC9t54079H Brassica oleracea HOM05D000116 ORTHO05D000703 9.3e-07 57.0 74 43.2
Cfa006927 Carpinus fangiana HOM05D000116 ORTHO05D000703 9.3e-07 57.0 55 45.5
Sp2g30360 Schrenkiella parvula HOM05D000116 ORTHO05D000703 9.3e-07 57.0 67 44.8
CARHR070850 Cardamine hirsuta HOM05D000116 ORTHO05D000703 1.2e-06 56.6 68 44.1
Haze_03822 Corylus avellana HOM05D000116 ORTHO05D000703 1.2e-06 56.6 55 45.5
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 1.6e-06 56.2 74 44.6
ECA238G4514 Erigeron canadensis HOM05D000116 ORTHO05D000703 1.6e-06 56.2 76 38.2
FvH4_1g12420 Fragaria vesca HOM05D000116 ORTHO05D000703 1.6e-06 56.2 78 39.7
Psat2g157080 Pisum sativum HOM05D000116 ORTHO05D000703 1.6e-06 56.2 50 52.0
Sabra07G0014700 Salix brachista HOM05D000116 ORTHO05D000703 1.6e-06 56.2 73 42.5
AL2G37570 Arabidopsis lyrata HOM05D000116 ORTHO05D000703 2.1e-06 55.8 65 46.2
Ca_24879_v3 Cicer arietinum L. HOM05D000116 ORTHO05D000703 2.1e-06 55.8 50 54.0
Ciclev10026749m.g Citrus clementina HOM05D000116 ORTHO05D000703 2.1e-06 55.8 71 45.1
Dinv33589 Davidia involucrata HOM05D000116 ORTHO05D000703 2.1e-06 55.8 54 48.1
COL.COLO4_21981 Corchorus olitorius HOM05D000116 ORTHO05D000703 2.7e-06 55.5 69 42.0
Glyma.01G170900 Glycine max HOM05D000116 ORTHO05D000703 2.7e-06 55.5 50 52.0
Gohir.D10G090900 Gossypium hirsutum HOM05D000116 ORTHO05D000703 2.7e-06 55.5 74 40.5
MD02G1136700 Malus domestica HOM05D007510 ORTHO05D000703 2.7e-06 55.5 51 51.0
Prupe.7G163800 Prunus persica HOM05D007510 ORTHO05D000703 2.7e-06 55.5 61 41.0
TAR628G0531 Trochodendron aralioides HOM05D000116 ORTHO05D000703 2.7e-06 55.5 75 41.3
Lj2g0025809 Lotus japonicus HOM05D000116 ORTHO05D000703 3.5e-06 55.1 50 50.0
TWI09G0031 Tripterygium wilfordii HOM05D000116 ORTHO05D000703 3.5e-06 55.1 71 42.3
GSVIVG01018843001 Vitis vinifera HOM05D000116 ORTHO05D000703 3.5e-06 55.1 46 50.0
DCAR_025985 Daucus carota HOM05D000116 ORTHO05D000703 4.6e-06 54.7 50 52.0
Lsat_1_v5_gn_4_75820 Lactuca sativa HOM05D000116 ORTHO05D000703 4.6e-06 54.7 45 53.3
Lsat_1_v5_gn_8_116281 Lactuca sativa HOM05D000116 ORTHO05D000703 4.6e-06 54.7 45 53.3
Potri.007G017300 Populus trichocarpa HOM05D000116 ORTHO05D000703 4.6e-06 54.7 73 42.5
PGR102G3039 Punica granatum HOM05D000116 ORTHO05D000703 4.6e-06 54.7 48 52.1
Atru.chr3.748 Acer truncatum HOM05D000116 ORTHO05D000703 6.0e-06 54.3 55 49.1
Aqoxy6G02427 Aquilegia oxysepala HOM05D000116 ORTHO05D000703 6.0e-06 54.3 50 52.0
arahy.Tifrunner.gnm1.ann1.HTI97C Arachis hypogaea HOM05D000116 ORTHO05D000703 6.0e-06 54.3 50 50.0
CANSAT01G3034 Cannabis sativa HOM05D000116 ORTHO05D000703 6.0e-06 54.3 58 46.6
QL06p034553 Quercus lobata HOM05D000116 ORTHO05D000703 6.0e-06 54.3 50 48.0
A09p10050 Brassica napus HOM05D000116 ORTHO05D000703 7.8e-06 53.9 67 43.3
ClCG01G020060 Citrullus lanatus HOM05D007510 ORTHO05D000703 7.8e-06 53.9 50 48.0
Dinv40043 Davidia involucrata HOM05D000116 ORTHO05D000703 7.8e-06 53.9 54 46.3
Glyma.11G072200 Glycine max HOM05D000116 ORTHO05D000703 7.8e-06 53.9 70 42.9
VMungo1215G3204 Vigna mungo HOM05D000116 ORTHO05D000703 7.8e-06 53.9 78 37.2


User provided reference genes

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