Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 2.3e-284 981.5 479 100.0
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 9.2e-257 889.8 474 90.3
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.2e-225 784.6 470 80.6
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 4.6e-224 781.2 469 80.2
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 2.6e-219 765.4 476 77.9
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 2.2e-218 762.3 475 77.9
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.8e-218 761.5 472 79.2
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.2e-216 756.5 471 77.7
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 2.7e-216 755.4 475 77.7
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 3.6e-216 755.0 476 77.5
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 3.6e-216 755.0 471 77.1
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.6e-216 754.6 476 76.7
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.1e-216 754.2 476 76.5
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.8e-215 752.7 486 75.9
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.3e-215 752.3 471 76.9
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 3.0e-215 751.9 471 75.6
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 3.9e-215 751.5 478 76.2
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 8.8e-215 750.4 467 77.9
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 2.0e-214 749.2 469 76.3
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.1e-212 743.4 477 75.5
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.4e-212 743.0 477 75.9
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.8e-212 742.7 471 77.1
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.4e-212 742.3 470 76.6
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.2e-211 740.0 472 77.1
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.6e-211 738.8 476 75.0
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 3.4e-211 738.4 471 76.9
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.0e-210 736.9 473 74.4
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.3e-210 736.5 470 75.1
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.3e-210 736.5 476 75.8
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.7e-210 736.1 473 74.4
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 2.9e-210 735.3 472 76.3
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 2.9e-210 735.3 475 75.6
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 3.8e-210 734.9 472 76.3
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 5.0e-210 734.6 471 74.1
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 6.5e-210 734.2 473 75.9
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.1e-209 733.4 472 76.3
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 1.4e-209 733.0 473 74.6
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.5e-209 732.3 452 78.5
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 4.2e-209 731.5 473 78.2
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 4.2e-209 731.5 466 76.2
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 7.2e-209 730.7 466 75.1
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.2e-208 729.9 474 75.7
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 2.1e-208 729.2 472 74.4
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 2.7e-208 728.8 473 74.0
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 4.7e-208 728.0 474 73.2
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 4.7e-208 728.0 473 75.3
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 2.3e-207 725.7 471 75.4
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 2.3e-207 725.7 470 74.9
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.5e-206 723.0 468 74.6
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 2.6e-206 722.2 473 74.2
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 3.3e-206 721.8 478 74.3
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 4.4e-206 721.5 541 66.9
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 9.7e-206 720.3 464 76.7
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.7e-205 719.5 476 73.1
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 2.8e-205 718.8 470 74.0
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.7e-205 718.4 470 73.6
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 4.8e-205 718.0 474 72.8
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 5.3e-204 714.5 471 72.6
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 5.3e-204 714.5 452 76.1
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.3e-202 709.9 444 76.4
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.9e-201 706.1 459 74.9
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.5e-201 704.5 444 76.1
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.2e-200 703.4 468 74.8
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 2.7e-200 702.2 466 72.5
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 1.4e-199 699.9 475 72.0
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 9.7e-198 693.7 434 77.4
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 4.8e-197 691.4 471 70.9
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 6.3e-197 691.0 473 72.3
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 3.5e-195 685.3 470 73.2
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 4.5e-195 684.9 473 72.3
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 5.9e-195 684.5 428 76.6
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 7.7e-195 684.1 473 71.7
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.3e-194 683.3 475 71.8
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 3.8e-194 681.8 469 72.9
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 7.2e-193 677.6 471 71.1
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.6e-192 676.4 471 70.9
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.7e-192 675.6 472 70.1
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.1e-192 674.5 471 72.0
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.8e-191 672.9 471 71.5
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 2.3e-191 672.5 471 70.7
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.5e-190 669.8 468 71.6
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 2.6e-190 669.1 470 70.2
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 5.7e-190 667.9 474 70.5
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.8e-190 667.2 471 70.3
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.2e-189 666.0 471 70.7
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-188 663.7 471 70.1
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 1.4e-188 663.3 470 69.6
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 3.1e-188 662.1 471 69.9
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 4.1e-188 661.8 471 69.9
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 5.4e-188 661.4 471 69.6
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 4.5e-187 658.3 471 69.0
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 4.5e-187 658.3 471 69.9
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.0e-186 657.1 471 69.4
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.0e-186 657.1 471 69.4
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 3.2e-185 652.1 473 67.9
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.2e-184 650.2 479 69.1
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.8e-183 646.4 426 73.0
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.5e-182 643.3 525 63.4
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 4.4e-182 641.7 469 67.6
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.7e-182 641.3 514 61.7
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 6.3e-181 637.9 496 64.3
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.0e-179 632.9 476 67.6
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.5e-179 631.7 412 73.3
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.9e-178 629.0 442 69.9
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 6.6e-178 627.9 472 65.9
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.1e-172 610.5 414 71.3
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.4e-164 583.6 463 66.1
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.6e-163 580.1 407 69.8
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.1e-161 573.9 366 74.3
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-159 567.4 350 77.7
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 5.2e-159 565.1 477 60.0
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 7.8e-155 551.2 468 62.0
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 7.8e-155 551.2 510 56.9
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 6.6e-154 548.1 499 58.1
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.4e-148 528.5 363 70.8
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.8e-147 524.6 472 59.3
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 1.1e-143 514.2 473 57.1
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 3.3e-137 492.7 478 53.8
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.6e-131 473.8 547 47.7
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 8.1e-128 461.5 474 53.0
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.4e-111 406.8 329 65.7
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 2.5e-108 396.7 269 70.3
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 7.2e-108 395.2 230 82.2
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 3.9e-106 389.4 305 63.0
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 2.6e-94 350.1 481 43.0
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.1e-91 339.0 285 64.9
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 6.1e-83 312.4 202 70.8
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.3e-81 306.6 272 60.3
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 7.0e-79 298.9 377 43.5
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.3e-77 294.7 494 36.2
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.1e-71 273.5 248 59.3
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.1e-68 265.0 505 35.4
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 3.6e-67 260.0 462 39.0
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 4.7e-67 259.6 272 49.3
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.2e-65 255.0 457 38.5
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.4e-55 221.5 174 63.2
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.5e-52 211.5 181 59.1
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.9e-52 211.1 288 45.5
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.6e-51 206.8 111 86.5
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.0e-51 205.7 111 86.5
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.0e-50 203.4 111 84.7
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 9.8e-49 198.7 209 49.3
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.7e-48 198.0 198 50.5
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 5.0e-45 186.4 202 52.0
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-40 171.8 111 74.8
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.9e-40 170.6 107 75.7
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.1e-39 168.7 125 64.0
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 5.1e-37 159.8 110 71.8
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.3e-36 156.0 314 34.7
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 3.2e-31 140.6 122 56.6
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 1.2e-30 138.7 92 66.3
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 4.6e-30 136.7 104 63.5
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.3e-28 129.4 67 92.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 5.4e-23 113.2 125 53.6
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 5.1e-21 106.7 67 71.6
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 3.4e-17 94.0 58 70.7
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 1.0e-13 82.4 62 64.5
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 2.2e-08 64.7 39 82.1
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 2.9e-08 64.3 46 60.9
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 9.3e-07 59.3 38 76.3
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 1.6e-06 58.5 47 59.6
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 2.1e-06 58.2 38 73.7


User provided reference genes

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