Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 3.2e-63 245.0 127 100.0
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 1.5e-28 129.8 92 73.9
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 1.2e-22 110.2 75 81.3
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 8.2e-19 97.4 78 66.7
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 2.6e-17 92.4 78 62.8
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 3.4e-17 92.0 76 64.5
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 4.5e-17 91.7 76 64.5
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 5.9e-17 91.3 90 55.6
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 7.6e-17 90.9 84 58.3
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 1.0e-16 90.5 78 65.4
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 1.3e-16 90.1 76 63.2
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 2.2e-16 89.4 84 58.3
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 2.9e-16 89.0 83 60.2
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 2.9e-16 89.0 76 65.8
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 6.5e-16 87.8 83 59.0
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 6.5e-16 87.8 82 57.3
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 1.1e-15 87.0 82 59.8
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 1.4e-15 86.7 88 54.5
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 3.2e-15 85.5 78 59.0
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 7.2e-15 84.3 78 59.0
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 9.4e-15 84.0 63 68.3
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 9.4e-15 84.0 78 61.5
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 9.4e-15 84.0 81 63.0
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 1.2e-14 83.6 77 63.6
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 1.2e-14 83.6 79 60.8
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 1.2e-14 83.6 78 60.3
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 1.6e-14 83.2 78 61.5
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 2.1e-14 82.8 76 63.2
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 3.6e-14 82.0 77 61.0
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 3.6e-14 82.0 78 62.8
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 3.6e-14 82.0 79 62.0
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 7.9e-14 80.9 79 58.2
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 7.9e-14 80.9 80 60.0
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 1.0e-13 80.5 79 59.5
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 2.3e-13 79.3 78 59.0
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 2.3e-13 79.3 107 47.7
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 3.9e-13 78.6 79 58.2
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 3.9e-13 78.6 76 59.2
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 5.1e-13 78.2 72 58.3
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 6.7e-13 77.8 77 62.3
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 6.7e-13 77.8 78 57.7
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 6.7e-13 77.8 78 59.0
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 6.7e-13 77.8 84 58.3
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 8.8e-13 77.4 76 59.2
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 3.3e-12 75.5 74 56.8
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 3.3e-12 75.5 73 57.5
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 4.3e-12 75.1 76 60.5
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 5.7e-12 74.7 65 61.5
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 5.7e-12 74.7 65 61.5
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 5.7e-12 74.7 97 48.5
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 5.7e-12 74.7 103 46.6
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 5.7e-12 74.7 76 53.9
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 1.3e-11 73.6 73 58.9
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 1.7e-11 73.2 80 56.2
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 2.2e-11 72.8 77 55.8
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 2.2e-11 72.8 74 54.1
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 2.8e-11 72.4 79 55.7
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 3.7e-11 72.0 78 53.8
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 4.8e-11 71.6 70 55.7
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 6.3e-11 71.2 77 57.1
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 1.4e-10 70.1 80 53.8
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 1.4e-10 70.1 74 58.1
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 1.8e-10 69.7 77 49.4
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 2.4e-10 69.3 80 51.2
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 5.3e-10 68.2 72 54.2
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 6.9e-10 67.8 78 50.0
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 9.1e-10 67.4 72 56.9
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 1.2e-09 67.0 82 53.7
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 1.2e-09 67.0 70 55.7
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 2.0e-09 66.2 79 50.6
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 2.0e-09 66.2 69 52.2
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 3.4e-09 65.5 73 53.4
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 5.9e-09 64.7 63 60.3
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 5.9e-09 64.7 75 53.3
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 7.7e-09 64.3 77 49.4
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 1.0e-08 63.9 69 52.2
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 1.0e-08 63.9 80 51.2
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 1.0e-08 63.9 80 51.2
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 1.0e-08 63.9 59 55.9
CDE04G1409 Ceratophyllum demersum HOM05D000443 ORTHO05D001066 1.3e-08 63.5 62 53.2
ATR0807G116 Amborella trichopoda HOM05D007627 ORTHO05D009640 2.2e-08 62.8 77 49.4
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 2.2e-08 62.8 75 49.3
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 2.9e-08 62.4 89 42.7
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 3.8e-08 62.0 78 50.0
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 6.5e-08 61.2 74 50.0
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 6.5e-08 61.2 75 49.3
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 8.5e-08 60.8 75 48.0
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 8.5e-08 60.8 95 37.9
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 1.4e-07 60.1 62 51.6
Carub.0001s3677 Capsella rubella HOM05D007627 ORTHO05D009640 3.2e-07 58.9 95 44.2
SHI28956 Sapria himalayana HOM05D000002 ORTHO05D000001 4.2e-07 58.5 56 51.8


User provided reference genes

Program Settings