Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 2.2e-252 875.2 442 100.0
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 5.3e-206 721.1 441 81.6
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 9.3e-195 683.7 440 75.9
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.5e-189 666.4 444 73.9
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 6.0e-186 654.4 426 74.6
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 8.7e-185 650.6 430 74.0
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 1.4e-182 643.3 426 72.5
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 5.3e-182 641.3 431 72.4
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 4.9e-180 634.8 428 72.2
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.6e-178 629.8 425 72.0
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 2.1e-178 629.4 425 71.8
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 2.7e-178 629.0 425 71.5
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.3e-177 626.7 425 71.3
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.8e-177 626.3 426 72.3
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 2.3e-177 625.9 425 71.5
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 3.0e-177 625.5 426 70.7
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 5.1e-177 624.8 429 69.9
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 8.7e-177 624.0 452 70.6
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 1.9e-176 622.9 426 70.9
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.9e-176 622.9 425 71.3
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 2.5e-176 622.5 426 70.4
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 7.4e-176 620.9 426 70.2
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 9.7e-176 620.5 426 71.4
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 9.7e-176 620.5 426 70.0
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 6.3e-175 617.8 426 70.7
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 1.4e-174 616.7 426 69.2
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 1.8e-174 616.3 426 70.4
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 6.9e-174 614.4 426 69.7
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.5e-173 613.2 430 68.4
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 3.4e-173 612.1 426 69.0
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.4e-173 612.1 426 69.7
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 4.5e-173 611.7 426 69.7
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 1.0e-172 610.5 426 70.0
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 3.8e-172 608.6 431 68.7
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 5.0e-172 608.2 426 69.2
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 1.1e-171 607.1 426 69.0
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 1.1e-171 607.1 429 68.1
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 7.2e-171 604.4 426 68.3
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 9.4e-171 604.0 464 64.7
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 2.1e-170 602.8 425 68.5
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 4.6e-170 601.7 427 67.9
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 6.1e-170 601.3 426 67.8
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.4e-169 600.1 426 68.8
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.0e-169 599.0 431 68.2
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 3.0e-169 599.0 426 67.4
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 5.1e-169 598.2 426 67.8
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 2.0e-168 596.3 425 68.0
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.5e-168 595.9 426 68.1
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 7.4e-168 594.3 426 68.3
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 9.7e-168 594.0 427 67.0
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.7e-167 593.2 426 67.8
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 9.1e-166 587.4 425 66.8
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 4.5e-165 585.1 429 66.7
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 5.9e-165 584.7 429 66.4
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 5.0e-164 581.6 427 66.3
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 8.5e-164 580.9 426 66.9
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 3.2e-163 578.9 432 70.4
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 5.5e-163 578.2 426 66.2
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 2.1e-162 576.2 426 66.7
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 2.7e-162 575.9 426 66.0
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 1.8e-161 573.2 435 65.3
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 1.1e-160 570.5 427 65.1
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 2.0e-160 569.7 514 58.4
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 2.0e-160 569.7 427 63.9
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 2.6e-160 569.3 426 65.5
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 1.3e-159 567.0 426 65.7
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 1.7e-159 566.6 434 65.0
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 8.2e-159 564.3 365 75.1
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 1.1e-158 563.9 516 57.0
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 2.4e-158 562.8 426 66.2
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 3.1e-158 562.4 426 65.0
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.1e-158 562.4 432 63.9
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 4.1e-158 562.0 426 64.1
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 4.5e-157 558.5 479 59.3
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 3.2e-155 552.4 468 60.0
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 4.2e-155 552.0 411 65.9
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 1.2e-154 550.4 411 65.7
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.6e-154 550.1 425 63.8
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 8.0e-154 547.7 436 62.6
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.4e-153 547.0 426 63.1
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 3.9e-153 545.4 478 59.0
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 6.7e-153 544.7 426 64.1
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.3e-151 540.4 428 62.1
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 4.8e-151 538.5 426 63.4
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 4.8e-151 538.5 429 62.2
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 6.3e-151 538.1 440 61.6
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.1e-150 537.3 430 62.3
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 3.6e-146 522.3 363 71.1
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 3.6e-146 522.3 375 68.0
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 3.0e-145 519.2 417 62.8
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 9.1e-142 507.7 426 61.0
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 1.7e-140 503.4 380 65.8
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.0e-137 494.2 427 59.5
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.0e-137 494.2 421 59.6
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 8.3e-135 484.6 720 40.4
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 5.9e-133 478.4 375 62.9
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.3e-132 477.2 375 62.7
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 2.8e-130 469.5 444 56.1
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 8.9e-129 464.5 693 40.8
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 4.4e-128 462.2 358 64.5
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 2.3e-124 449.9 429 53.8
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 6.0e-117 425.2 427 50.1
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 2.0e-112 410.2 429 48.0
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 3.7e-111 406.0 291 71.1
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 1.3e-108 397.5 296 66.2
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 8.6e-108 394.8 341 57.8
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 9.5e-107 391.3 335 60.0
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.6e-106 389.4 312 62.5
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 8.9e-105 384.8 439 46.9
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 7.8e-93 345.1 351 50.7
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.8e-82 310.1 248 64.9
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 1.1e-81 308.1 223 70.4
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.7e-79 300.8 215 70.2
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 3.7e-66 256.5 236 59.7
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 3.9e-60 236.5 283 48.8
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 2.5e-59 233.8 429 34.3
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 2.2e-58 230.7 161 69.6
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 1.1e-57 228.4 215 56.7
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.4e-57 227.3 130 78.5
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.7e-53 213.8 425 34.8
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.3e-52 210.7 159 64.8
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 4.8e-50 203.0 141 68.8
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.1e-46 191.8 134 70.1
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 1.2e-40 171.8 326 34.4
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.0e-39 168.7 136 61.0
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.6e-35 154.1 145 52.4
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 1.9e-30 137.9 196 43.9
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 5.5e-30 136.3 189 44.4
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 3.1e-25 120.6 115 50.4
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 1.6e-24 118.2 79 70.9
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.2e-22 110.2 85 60.0
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 2.6e-19 100.9 53 77.4
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 3.1e-17 94.0 68 61.8
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 2.0e-16 91.3 68 61.8
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 5.9e-16 89.7 68 61.8
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 8.6e-15 85.9 85 44.7
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.1e-14 85.5 141 38.3
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 1.4e-12 78.6 43 79.1
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 1.8e-09 68.2 43 65.1
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.2e-08 65.5 44 65.9
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 5.6e-06 56.6 35 74.3


User provided reference genes

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