Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 0.0e+00 1288.1 695 100.0
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 4.0e-208 728.8 697 60.7
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.1e-189 667.5 684 60.2
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 4.7e-161 572.4 711 52.5
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-92 345.1 622 41.2
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 2.3e-83 314.3 569 40.2
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.8e-80 304.7 620 38.2
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 3.1e-80 303.9 570 39.6
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 7.0e-80 302.8 596 40.3
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 8.9e-75 285.8 626 38.7
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 2.0e-74 284.6 586 40.6
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 9.8e-74 282.3 644 36.3
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 9.8e-74 282.3 623 38.5
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.9e-73 280.8 585 38.3
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 2.9e-73 280.8 590 38.5
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 1.4e-72 278.5 595 37.1
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 9.2e-72 275.8 602 37.7
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 9.2e-72 275.8 593 38.8
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 5.9e-71 273.1 639 36.3
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 7.8e-71 272.7 587 36.5
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 3.0e-70 270.8 548 39.6
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.9e-70 270.4 609 36.9
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 8.6e-70 269.2 622 36.3
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 4.3e-69 266.9 600 37.0
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 5.6e-69 266.5 632 37.2
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.1e-68 264.6 546 38.3
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 5.2e-67 260.0 570 37.0
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 5.8e-66 256.5 531 38.2
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 7.5e-66 256.1 701 35.2
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 9.8e-66 255.8 598 35.3
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.3e-65 255.4 621 36.1
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.3e-65 255.4 706 34.0
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.3e-65 255.4 597 35.0
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.9e-65 254.2 537 37.8
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 3.7e-65 253.8 620 35.3
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 6.4e-65 253.1 634 35.5
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.4e-64 251.9 629 34.5
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.4e-64 251.9 542 37.8
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.4e-64 251.1 675 34.1
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.4e-64 250.0 652 34.7
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 7.0e-64 249.6 552 36.2
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 2.0e-63 248.1 558 37.6
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 3.5e-63 247.3 544 36.9
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 1.0e-62 245.7 639 33.0
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.0e-62 245.7 630 34.9
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.3e-62 245.4 587 36.3
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 2.3e-62 244.6 622 35.4
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 8.6e-62 242.7 592 35.0
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.5e-61 241.9 539 36.4
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.5e-61 241.9 663 32.7
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.9e-61 241.5 667 32.1
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 3.3e-61 240.7 645 34.6
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 4.3e-61 240.4 600 35.8
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 3.6e-60 237.3 636 33.2
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 3.6e-60 237.3 645 32.1
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 3.6e-60 237.3 638 32.9
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 3.6e-60 237.3 533 36.6
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 4.7e-60 236.9 575 34.3
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 6.2e-60 236.5 553 36.9
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.3e-59 234.6 555 34.6
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.3e-59 234.6 612 33.5
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 3.1e-59 234.2 604 34.9
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.2e-58 232.3 595 34.3
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.0e-58 231.5 631 35.3
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 3.4e-58 230.7 632 33.1
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.1e-56 223.8 559 36.0
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 1.6e-55 221.9 612 35.5
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.1e-55 221.5 596 34.1
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 6.0e-55 219.9 538 35.7
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.0e-54 219.2 607 35.7
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 3.9e-54 217.2 609 32.8
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 1.1e-53 215.7 599 35.1
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.5e-53 215.3 629 33.5
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 5.6e-53 213.4 678 31.7
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 1.2e-52 212.2 595 33.8
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.6e-52 211.8 608 34.7
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 3.6e-52 210.7 684 31.3
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 4.7e-52 210.3 618 33.2
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 4.7e-52 210.3 618 33.2
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 6.2e-52 209.9 601 34.8
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 8.1e-52 209.5 709 31.0
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.2e-50 205.7 617 35.3
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 1.5e-50 205.3 620 32.4
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 3.4e-50 204.1 612 33.7
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 2.2e-49 201.4 606 34.5
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 2.2e-49 201.4 647 29.8
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.9e-49 201.1 550 32.5
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 4.9e-49 200.3 776 30.4
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 8.4e-49 199.5 518 32.2
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 4.1e-48 197.2 675 28.9
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 7.1e-48 196.4 595 32.4
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 7.1e-48 196.4 595 32.4
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 1.2e-47 195.7 650 31.4
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.2e-47 195.7 522 34.1
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.6e-47 195.3 623 30.5
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.5e-47 194.1 839 28.8
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 3.5e-47 194.1 780 29.6
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 4.6e-47 193.7 602 30.9
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 6.0e-47 193.4 675 29.3
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 3.9e-46 190.7 724 28.0
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 5.1e-46 190.3 617 31.6
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 8.6e-46 189.5 778 30.2
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.1e-45 189.1 568 32.4
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 2.5e-45 188.0 658 29.6
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.7e-44 183.7 684 28.8
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 6.2e-44 183.3 567 31.2
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.8e-42 176.8 664 31.0
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 7.6e-42 176.4 616 32.0
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 9.9e-42 176.0 507 33.9
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 4.9e-41 173.7 600 30.3
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.4e-40 172.2 555 33.3
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 4.2e-40 170.6 553 30.0
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 7.1e-40 169.9 512 31.6
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 6.0e-39 166.8 627 30.0
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 3.9e-38 164.1 526 34.2
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.6e-36 158.7 371 36.1
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.1e-36 158.3 333 37.5
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 1.8e-35 155.2 559 30.1
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 3.1e-35 154.5 291 41.6
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.2e-34 152.5 346 38.4
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 1.5e-34 152.1 360 35.3
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 3.4e-34 151.0 163 52.8
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 9.9e-34 149.4 503 31.8
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 6.4e-33 146.7 333 36.6
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.9e-32 145.2 421 32.3
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 3.5e-31 141.0 406 34.0
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 6.0e-31 140.2 413 32.7
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.7e-30 136.3 744 26.2
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.8e-27 128.6 174 48.9
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 2.6e-26 124.8 396 33.6
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 4.9e-25 120.6 717 24.7
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 7.9e-23 113.2 347 32.3
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 6.7e-22 110.2 234 37.6
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 8.7e-22 109.8 392 28.8
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.8e-20 104.0 151 42.4
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.8e-19 102.1 700 25.6
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 6.9e-19 100.1 165 38.8
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 9.0e-19 99.8 176 43.2
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 7.6e-18 96.7 128 43.8
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 1.3e-17 95.9 338 29.6
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 8.4e-17 93.2 334 29.3
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 1.1e-16 92.8 329 34.0
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 6.0e-15 87.0 90 46.7
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 1.9e-13 82.0 236 35.2
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.6e-12 79.0 61 62.3
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.4e-10 71.2 492 24.4
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 1.0e-09 69.7 649 23.6
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.0e-09 69.7 88 47.7
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 1.3e-09 69.3 370 28.1
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.3e-09 69.3 344 28.2
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.3e-09 69.3 412 28.9
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.7e-09 68.9 344 28.2
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.7e-09 68.9 88 47.7
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 5.0e-09 67.4 80 41.2
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 1.9e-08 65.5 58 50.0
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 3.2e-08 64.7 87 36.8
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.2e-08 64.3 174 35.6
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.2e-07 62.8 78 42.3
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.6e-07 62.4 186 34.4
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 2.1e-07 62.0 103 42.7
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 2.1e-07 62.0 82 35.4
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.3e-06 59.3 482 23.7


User provided reference genes

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