Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 3.8e-252 874.4 453 100.0
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 6.2e-194 681.0 463 74.7
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 1.2e-189 666.8 433 76.0
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 4.4e-176 621.7 379 78.6
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.4e-145 520.4 438 58.7
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 4.1e-145 518.8 429 60.4
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 1.3e-143 513.8 440 60.0
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 1.7e-143 513.5 435 58.4
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 3.0e-140 502.7 440 56.8
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.8e-138 496.1 430 57.4
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 8.2e-138 494.6 447 56.6
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.1e-137 494.2 437 56.1
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 1.8e-137 493.4 425 58.8
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 3.1e-137 492.7 474 54.4
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 5.9e-136 488.4 432 56.9
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 8.5e-135 484.6 438 56.4
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 1.1e-134 484.2 434 54.4
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 3.2e-134 482.6 434 55.5
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 9.4e-134 481.1 434 54.8
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.2e-133 480.7 430 56.5
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 2.1e-133 479.9 441 54.6
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 4.7e-133 478.8 434 54.4
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 6.1e-133 478.4 434 53.7
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 5.1e-132 475.3 445 54.8
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 6.7e-132 474.9 434 55.1
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 8.8e-132 474.6 442 56.6
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 7.4e-131 471.5 446 54.9
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 6.3e-130 468.4 438 54.3
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 7.0e-129 464.9 434 53.9
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 2.6e-128 463.0 397 58.2
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 4.5e-128 462.2 432 52.3
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 1.3e-127 460.7 388 60.1
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 1.7e-127 460.3 437 53.5
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 2.9e-127 459.5 444 52.9
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 3.8e-127 459.1 480 50.2
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 5.0e-127 458.8 432 55.6
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 8.5e-127 458.0 392 57.4
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 9.4e-126 454.5 433 52.0
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 9.4e-126 454.5 443 52.8
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 2.7e-125 453.0 439 52.6
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 2.7e-125 453.0 431 52.0
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 1.0e-124 451.1 439 52.6
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 3.0e-124 449.5 440 53.0
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 5.2e-124 448.7 436 52.3
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 5.2e-124 448.7 438 51.4
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 8.8e-124 448.0 431 52.7
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 2.0e-123 446.8 391 57.8
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.7e-123 445.3 431 50.8
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 2.2e-122 443.4 443 52.6
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 2.2e-122 443.4 420 52.9
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 2.8e-122 443.0 440 52.0
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 3.7e-122 442.6 386 56.0
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 6.3e-122 441.8 439 51.7
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 8.2e-122 441.4 438 50.5
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 8.2e-122 441.4 431 50.6
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 8.2e-122 441.4 440 52.3
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 1.1e-121 441.0 438 50.9
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.1e-121 441.0 431 50.3
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 1.8e-121 440.3 392 56.9
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 2.4e-121 439.9 439 50.3
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 5.3e-121 438.7 440 51.6
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 9.1e-121 438.0 421 53.4
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 9.1e-121 438.0 442 52.5
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 1.2e-120 437.6 437 49.7
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 2.6e-120 436.4 444 51.8
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 1.3e-119 434.1 437 52.4
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 2.9e-119 433.0 440 50.9
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 5.0e-119 432.2 384 56.2
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.1e-118 431.0 445 52.4
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 1.5e-118 430.6 440 50.7
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 1.5e-118 430.6 436 52.3
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 4.2e-118 429.1 440 50.7
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 6.1e-117 425.2 440 50.5
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 2.3e-116 423.3 440 50.2
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 2.3e-116 423.3 440 50.2
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 3.0e-116 422.9 436 51.6
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 4.0e-116 422.5 421 50.1
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 4.0e-116 422.5 513 45.6
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 3.3e-115 419.5 382 55.0
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.3e-114 417.5 430 47.7
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 7.0e-113 411.8 439 49.9
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 9.1e-113 411.4 449 51.0
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.2e-112 411.0 386 53.6
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 2.7e-112 409.8 434 49.8
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 1.7e-111 407.1 385 54.3
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.5e-110 402.1 381 52.2
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 5.4e-105 385.6 498 43.2
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 1.3e-103 380.9 388 49.5
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 1.6e-101 374.0 386 51.8
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 3.6e-101 372.9 449 45.9
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 1.8e-100 370.5 438 47.5
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 2.0e-99 367.1 409 48.2
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 2.7e-96 356.7 433 46.7
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 7.8e-96 355.1 435 44.8
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 2.9e-95 353.2 359 50.4
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 2.1e-93 347.1 446 44.6
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 8.0e-93 345.1 448 43.5
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 2.6e-91 340.1 450 43.8
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 5.8e-91 339.0 441 44.0
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 7.5e-91 338.6 393 48.1
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 3.2e-89 333.2 438 44.7
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 3.0e-87 326.6 445 43.4
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 7.3e-86 322.0 435 44.4
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 1.2e-85 321.2 435 41.4
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 1.6e-85 320.9 330 48.8
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 6.2e-85 318.9 440 43.0
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 6.2e-85 318.9 448 42.9
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 1.4e-84 317.8 435 41.1
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 3.1e-84 316.6 289 55.7
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 4.4e-83 312.8 345 48.7
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 5.8e-83 312.4 420 41.0
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 7.8e-80 302.0 441 37.9
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.7e-79 300.8 435 37.2
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 1.1e-78 298.1 452 41.4
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.1e-77 293.9 454 37.2
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 2.3e-76 290.4 434 37.8
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 1.2e-75 288.1 400 41.8
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.2e-72 278.1 434 36.2
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 5.8e-67 259.2 279 50.9
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 1.0e-63 248.4 355 41.4
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.4e-60 237.3 453 34.7
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.3e-58 231.5 385 35.3
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 1.0e-47 195.3 408 29.9
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 2.1e-45 187.6 295 39.0
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 6.9e-28 129.4 128 46.9
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 1.2e-24 118.6 148 46.6
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 6.3e-13 79.7 76 51.3
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 2.0e-11 74.7 52 69.2
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 1.7e-10 71.6 51 64.7
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 5.0e-10 70.1 52 65.4
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 2.5e-09 67.8 72 50.0
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 9.4e-09 65.9 51 64.7
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 6.1e-08 63.2 60 53.3


User provided reference genes

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