Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0328541 Helianthus annuus HOM05D002958 ORTHO05D003558 5.1e-128 461.1 229 100.0
HanXRQChr09g0270181 Helianthus annuus HOM05D002958 ORTHO05D003558 1.7e-43 180.3 217 54.4
ECA236G4656 Erigeron canadensis HOM05D002958 ORTHO05D003558 1.3e-38 164.1 216 49.5
Lsat_1_v5_gn_7_104120 Lactuca sativa HOM05D002958 ORTHO05D003558 4.1e-37 159.1 222 49.5
vmacro09527 Vaccinium macrocarpon HOM05D002958 ORTHO05D003558 2.0e-36 156.8 224 48.2
Cfa020573 Carpinus fangiana HOM05D002958 ORTHO05D003558 1.7e-35 153.7 221 47.5
Rhsim04G0021800 Rhododendron simsii HOM05D002958 ORTHO05D003558 2.3e-35 153.3 223 47.1
CiPaw.12G119100 Carya illinoinensis HOM05D002958 ORTHO05D003558 6.6e-35 151.8 222 47.3
COL.COLO4_27183 Corchorus olitorius HOM05D002958 ORTHO05D003558 8.6e-35 151.4 223 45.7
CSS0016776 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 3.3e-34 149.4 226 48.7
CSS0042025 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 3.3e-34 149.4 226 48.7
GSVIVG01014315001 Vitis vinifera HOM05D002958 ORTHO05D003558 4.3e-34 149.1 221 46.6
Actinidia18769 Actinidia chinensis HOM05D002958 ORTHO05D003558 5.6e-34 148.7 226 46.0
Manes.15G087800 Manihot esculenta HOM05D002958 ORTHO05D003558 5.6e-34 148.7 221 47.1
CAN.G162.50 Capsicum annuum HOM05D002958 ORTHO05D003558 7.3e-34 148.3 217 47.9
DCAR_020992 Daucus carota HOM05D002958 ORTHO05D003558 1.6e-33 147.1 222 48.2
Solyc07g063040.3 Solanum lycopersicum HOM05D002958 ORTHO05D003558 1.6e-33 147.1 217 47.9
Sopen07g031230 Solanum pennellii HOM05D002958 ORTHO05D003558 1.6e-33 147.1 217 47.9
PGSC0003DMG400012412 Solanum tuberosum HOM05D002958 ORTHO05D003558 1.6e-33 147.1 217 47.9
Cc05_g11940 Coffea canephora HOM05D002958 ORTHO05D003558 2.1e-33 146.7 222 46.8
Atru.chr2.2483 Acer truncatum HOM05D002958 ORTHO05D003558 2.8e-33 146.4 222 45.5
Nn8g39708 Nelumbo nucifera HOM05D002958 ORTHO05D003558 3.6e-33 146.0 221 45.2
Manes.03G109300 Manihot esculenta HOM05D002958 ORTHO05D003558 4.7e-33 145.6 221 45.2
QL08p022191 Quercus lobata HOM05D002958 ORTHO05D003558 4.7e-33 145.6 221 47.1
Glyma.06G240100 Glycine max HOM05D002958 ORTHO05D003558 6.2e-33 145.2 219 45.2
Nitab4.5_0001241g0080 Nicotiana tabacum HOM05D002958 ORTHO05D003558 6.2e-33 145.2 224 44.6
Oeu024907.2 Olea europaea HOM05D002958 ORTHO05D003558 6.2e-33 145.2 221 45.7
Prupe.4G180000 Prunus persica HOM05D002958 ORTHO05D003558 6.2e-33 145.2 222 47.3
Actinidia35245 Actinidia chinensis HOM05D002958 ORTHO05D003558 8.0e-33 144.8 173 54.3
CiPaw.11G170500 Carya illinoinensis HOM05D002958 ORTHO05D003558 1.4e-32 144.1 221 45.7
Duzib213G1007 Durio zibethinus HOM05D002958 ORTHO05D003558 1.4e-32 144.1 223 44.4
Gorai.002G069300 Gossypium raimondii HOM05D002958 ORTHO05D003558 1.4e-32 144.1 224 45.1
Lj8C155G9 Lonicera japonica HOM05D002958 ORTHO05D003558 1.4e-32 144.1 221 47.5
Lj3g0001420 Lotus japonicus HOM05D002958 ORTHO05D003558 1.4e-32 144.1 220 45.5
Nitab4.5_0001336g0100 Nicotiana tabacum HOM05D002958 ORTHO05D003558 1.4e-32 144.1 223 45.7
Nitab4.5_0002383g0020 Nicotiana tabacum HOM05D002958 ORTHO05D003558 1.8e-32 143.7 221 44.8
Peaxi162Scf00069g01630 Petunia axillaris HOM05D002958 ORTHO05D003558 1.8e-32 143.7 223 46.2
arahy.Tifrunner.gnm1.ann1.CK6KU2 Arachis hypogaea HOM05D002958 ORTHO05D003558 2.3e-32 143.3 223 46.6
RcHm_v2.0_Chr5g0033201 Rosa chinensis HOM05D002958 ORTHO05D003558 2.3e-32 143.3 222 45.5
Thecc.07G091600 Theobroma cacao HOM05D002958 ORTHO05D003558 2.3e-32 143.3 223 44.4
Potri.001G399000 Populus trichocarpa HOM05D002958 ORTHO05D003558 3.1e-32 142.9 217 45.2
TWI39G0621 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 3.1e-32 142.9 222 46.4
Gohir.A01G063000 Gossypium hirsutum HOM05D002958 ORTHO05D003558 4.0e-32 142.5 223 45.3
MELO3C016693.2 Cucumis melo HOM05D002958 ORTHO05D003558 6.8e-32 141.7 221 43.0
Sabra16G0261600 Salix brachista HOM05D002958 ORTHO05D003558 6.8e-32 141.7 223 43.5
Duzib170G0760 Durio zibethinus HOM05D002958 ORTHO05D003558 1.2e-31 141.0 223 43.5
Gohir.D01G049400 Gossypium hirsutum HOM05D002958 ORTHO05D003558 1.2e-31 141.0 224 44.6
GSVIVG01020566001 Vitis vinifera HOM05D002958 ORTHO05D003558 1.2e-31 141.0 223 44.4
MD03G1229100 Malus domestica HOM05D002958 ORTHO05D003558 1.5e-31 140.6 223 45.7
TAR627G0954 Trochodendron aralioides HOM05D002958 ORTHO05D003558 1.5e-31 140.6 222 44.1
MBI07_g30198_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 2.0e-31 140.2 222 44.6
FvH4_3g19790 Fragaria vesca HOM05D002958 ORTHO05D003558 2.6e-31 139.8 221 43.9
FAN11G0087 Fragaria x ananassa HOM05D002958 ORTHO05D003558 2.6e-31 139.8 221 43.9
FAN16G0300 Fragaria x ananassa HOM05D002958 ORTHO05D003558 2.6e-31 139.8 219 43.8
Nitab4.5_0000207g0070 Nicotiana tabacum HOM05D002958 ORTHO05D003558 2.6e-31 139.8 221 43.9
Ciclev10007808m.g Citrus clementina HOM05D002958 ORTHO05D003558 5.8e-31 138.7 222 44.1
Gohir.D13G151100 Gossypium hirsutum HOM05D002958 ORTHO05D003558 5.8e-31 138.7 224 43.3
CDE02G0813 Ceratophyllum demersum HOM05D002958 ORTHO05D003558 7.5e-31 138.3 221 43.4
Lalb_Chr01g0016791 Lupinus albus HOM05D002958 ORTHO05D003558 7.5e-31 138.3 221 42.1
MD11G1249900 Malus domestica HOM05D002958 ORTHO05D003558 7.5e-31 138.3 223 43.9
Sed0013988 Sechium edule HOM05D002958 ORTHO05D003558 7.5e-31 138.3 217 43.3
Migut.M00798 Erythranthe guttata HOM05D002958 ORTHO05D003558 9.8e-31 137.9 219 44.7
Aqoxy4G00736 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 1.7e-30 137.1 223 45.3
Ca_03507_v3 Cicer arietinum L. HOM05D002958 ORTHO05D003558 1.7e-30 137.1 220 43.6
FAN21G2785 Fragaria x ananassa HOM05D002958 ORTHO05D003558 1.7e-30 137.1 221 43.4
Hma1.2p1_0458F.1_g157030 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 1.7e-30 137.1 222 45.5
Glyma.12G225300 Glycine max HOM05D002958 ORTHO05D003558 2.2e-30 136.7 220 42.7
Oeu051071.1 Olea europaea HOM05D002958 ORTHO05D003558 2.2e-30 136.7 236 43.2
Psat5g242200 Pisum sativum HOM05D002958 ORTHO05D003558 2.2e-30 136.7 221 43.4
Gorai.013G170700 Gossypium raimondii HOM05D002958 ORTHO05D003558 2.9e-30 136.3 224 42.9
Sabra11G0103200 Salix brachista HOM05D002958 ORTHO05D003558 3.7e-30 136.0 188 46.3
arahy.Tifrunner.gnm1.ann1.VQ4NRX Arachis hypogaea HOM05D002958 ORTHO05D003558 4.9e-30 135.6 248 42.3
CsaV3_4G033640 Cucumis sativus L. HOM05D002958 ORTHO05D003558 4.9e-30 135.6 217 41.9
Eucgr.F03307 Eucalyptus grandis HOM05D002958 ORTHO05D003558 4.9e-30 135.6 219 42.5
Glyma.13G276000 Glycine max HOM05D002958 ORTHO05D003558 4.9e-30 135.6 220 42.7
Phvul.005G072900 Phaseolus vulgaris HOM05D002958 ORTHO05D003558 4.9e-30 135.6 222 42.3
Sp6g15910 Schrenkiella parvula HOM05D002958 ORTHO05D003558 4.9e-30 135.6 220 43.6
Medtr2g079110 Medicago truncatula HOM05D002958 ORTHO05D003558 6.4e-30 135.2 221 43.9
PGR083G2586 Punica granatum HOM05D002958 ORTHO05D003558 6.4e-30 135.2 220 42.3
Os11g0484000 Oryza sativa ssp. japonica HOM05D002958 ORTHO05D003558 1.1e-29 134.4 213 43.7
ClCG11G018020 Citrullus lanatus HOM05D002958 ORTHO05D003558 1.4e-29 134.0 218 42.2
TPR.G7973 Trifolium pratense HOM05D002958 ORTHO05D003558 1.4e-29 134.0 221 43.4
AUR62019437 Chenopodium quinoa HOM05D002958 ORTHO05D003558 1.9e-29 133.7 220 43.6
Dinv14925 Davidia involucrata HOM05D002958 ORTHO05D003558 1.9e-29 133.7 216 45.4
Sc16g0007030 Simmondsia chinensis HOM05D002958 ORTHO05D003558 1.9e-29 133.7 231 43.7
Carub.0008s1414 Capsella rubella HOM05D002958 ORTHO05D003558 2.4e-29 133.3 220 42.7
Thecc.02G181900 Theobroma cacao HOM05D002958 ORTHO05D003558 2.4e-29 133.3 224 42.0
EL10Ac4g08198 Beta vulgaris HOM05D002958 ORTHO05D003558 3.2e-29 132.9 221 42.5
FAN25G2067 Fragaria x ananassa HOM05D002958 ORTHO05D003558 4.1e-29 132.5 221 43.9
ATR0737G076 Amborella trichopoda HOM05D002958 ORTHO05D003558 5.4e-29 132.1 224 43.8
Peaxi162Scf00027g00211 Petunia axillaris HOM05D002958 ORTHO05D003558 5.4e-29 132.1 171 48.0
SalBow7G2893 Salvia bowleyana HOM05D002958 ORTHO05D003558 7.1e-29 131.7 221 43.4
CSS0039562 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 9.2e-29 131.3 164 51.2
CSS0047160 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 9.2e-29 131.3 164 51.2
Gohir.A13G146200 Gossypium hirsutum HOM05D002958 ORTHO05D003558 2.7e-28 129.8 171 47.4
Actinidia13022 Actinidia chinensis HOM05D002958 ORTHO05D003558 3.5e-28 129.4 223 42.2
BcaC04g20412 Brassica carinata HOM05D002958 ORTHO05D003558 3.5e-28 129.4 220 42.7
C09p43840 Brassica napus HOM05D002958 ORTHO05D003558 3.5e-28 129.4 228 42.1
THA.LOC104799927 Tarenaya hassleriana HOM05D002958 ORTHO05D003558 3.5e-28 129.4 222 41.0
Thhalv10013244m.g Eutrema salsugineum HOM05D002958 ORTHO05D003558 4.6e-28 129.0 218 42.7
A02p10810 Brassica napus HOM05D002958 ORTHO05D003558 6.0e-28 128.6 217 42.4
BraA02t06142Z Brassica rapa HOM05D002958 ORTHO05D003558 6.0e-28 128.6 217 42.4
CARHR266980 Cardamine hirsuta HOM05D002958 ORTHO05D003558 7.8e-28 128.3 222 41.9
CANSAT56G4387 Cannabis sativa HOM05D002958 ORTHO05D003558 1.0e-27 127.9 218 42.7
Aa31LG3G10080 Aethionema arabicum HOM05D002958 ORTHO05D003558 1.3e-27 127.5 220 41.4
AL8G28910 Arabidopsis lyrata HOM05D002958 ORTHO05D003558 1.3e-27 127.5 220 41.4
A10p11240 Brassica napus HOM05D002958 ORTHO05D003558 1.3e-27 127.5 220 42.7
Gorai.013G169100 Gossypium raimondii HOM05D002958 ORTHO05D003558 1.3e-27 127.5 172 45.3
Rhsim06G0199700 Rhododendron simsii HOM05D002958 ORTHO05D003558 1.3e-27 127.5 189 44.4
Zm00001eb169620 Zea mays HOM05D002958 ORTHO05D003558 1.3e-27 127.5 220 41.4
BcaB08g35744 Brassica carinata HOM05D002958 ORTHO05D003558 1.7e-27 127.1 215 42.3
BcaC03g14381 Brassica carinata HOM05D002958 ORTHO05D003558 1.7e-27 127.1 217 42.4
PSO541G2422 Papaver somniferum HOM05D002958 ORTHO05D003558 1.7e-27 127.1 219 42.0
Ah.04g164780 Amaranthus hybridus HOM05D002958 ORTHO05D003558 2.3e-27 126.7 220 40.9
C02p17920 Brassica napus HOM05D002958 ORTHO05D003558 2.3e-27 126.7 215 42.8
BolC2t07923H Brassica oleracea HOM05D002958 ORTHO05D003558 2.3e-27 126.7 215 42.8
BraA10t43217Z Brassica rapa HOM05D002958 ORTHO05D003558 2.3e-27 126.7 228 41.2
BolC9t57268H Brassica oleracea HOM05D002958 ORTHO05D003558 3.0e-27 126.3 228 41.2
PSO675G8275 Papaver somniferum HOM05D002958 ORTHO05D003558 3.9e-27 125.9 219 41.6
BcaB05g22079 Brassica carinata HOM05D002958 ORTHO05D003558 5.1e-27 125.6 215 43.3
TWI14G0888 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 6.6e-27 125.2 224 42.4
Hma1.2p1_0002F.1_g002040 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 8.6e-27 124.8 222 39.2
Haze_09438 Corylus avellana HOM05D002958 ORTHO05D003558 1.1e-26 124.4 300 35.0
AT5G53850 Arabidopsis thaliana HOM05D002958 ORTHO05D003558 1.5e-26 124.0 217 42.4
Actinidia11087 Actinidia chinensis HOM05D002958 ORTHO05D003558 3.3e-26 122.9 165 48.5
MSTRG.15237 Avicennia marina HOM05D002958 ORTHO05D003558 1.2e-25 120.9 220 42.3
Lj8C110T8 Lonicera japonica HOM05D002958 ORTHO05D003558 1.6e-25 120.6 220 37.7
MBI06_g23079_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 4.0e-24 115.9 162 48.1
QL08p039561 Quercus lobata HOM05D002958 ORTHO05D003558 4.0e-24 115.9 166 45.2
HanXRQChr12g0364161 Helianthus annuus HOM05D002958 ORTHO05D003558 5.2e-24 115.5 169 46.7
CAN.G1119.24 Capsicum annuum HOM05D002958 ORTHO05D003558 1.5e-23 114.0 165 46.7
Gohir.D13G152056 Gossypium hirsutum HOM05D002958 ORTHO05D003558 3.4e-23 112.8 172 43.0
Lsat_1_v5_gn_9_97501 Lactuca sativa HOM05D002958 ORTHO05D003558 3.4e-23 112.8 169 46.2
MBI06_g20686_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 3.4e-23 112.8 160 47.5
Mapoly0003s0138 Marchantia polymorpha HOM05D002958 ORTHO05D003558 3.4e-23 112.8 223 38.1
Actinidia09690 Actinidia chinensis HOM05D002958 ORTHO05D003558 5.8e-23 112.1 163 49.7
Manes.13G144832 Manihot esculenta HOM05D002958 ORTHO05D003558 5.8e-23 112.1 220 38.6
PGSC0003DMG400025041 Solanum tuberosum HOM05D002958 ORTHO05D003558 7.6e-23 111.7 160 45.6
Aqoxy4G00995 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 1.7e-22 110.5 163 47.2
Gohir.A13G147033 Gossypium hirsutum HOM05D002958 ORTHO05D003558 8.3e-22 108.2 167 39.5
Cpa.g.sc83.52 Carica papaya HOM05D002958 ORTHO05D003558 1.1e-21 107.8 217 37.8
AagrBONN_evm.TU.Sc2ySwM_368.412 Anthoceros agrestis HOM05D002958 ORTHO05D003558 3.2e-21 106.3 217 37.3
Haze_13197 Corylus avellana HOM05D002958 ORTHO05D003558 3.2e-21 106.3 232 37.5
Solyc10g007050.3 Solanum lycopersicum HOM05D002958 ORTHO05D003558 3.2e-21 106.3 160 43.8
Sopen10g002950 Solanum pennellii HOM05D002958 ORTHO05D003558 3.2e-21 106.3 160 43.8
Lalb_Chr20g0109601 Lupinus albus HOM05D002958 ORTHO05D003558 5.4e-21 105.5 201 41.3
AUR62039195 Chenopodium quinoa HOM05D002958 ORTHO05D003558 7.1e-21 105.1 149 47.7
Eucgr.F01149 Eucalyptus grandis HOM05D002958 ORTHO05D003558 9.2e-21 104.8 169 45.0
Pp3c3_4430 Physcomitrium patens HOM05D002958 ORTHO05D003558 2.1e-20 103.6 217 36.4
TAR624G0879 Trochodendron aralioides HOM05D002958 ORTHO05D003558 2.7e-20 103.2 193 40.4
SGA_v2.0_scaffold73G24254 Striga asiatica HOM05D002958 ORTHO05D003558 4.6e-20 102.4 230 35.2
vmacro11871 Vaccinium macrocarpon HOM05D002958 ORTHO05D003558 4.6e-20 102.4 163 43.6
Aqoxy7G03109 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 6.0e-20 102.1 153 45.8
unitig_578.g15672 Utricularia gibba HOM05D002958 ORTHO05D003558 6.0e-20 102.1 187 44.4
Potri.011G118132 Populus trichocarpa HOM05D002958 ORTHO05D003558 1.3e-19 100.9 150 46.0
Aqoxy7G02353 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 1.7e-19 100.5 154 46.8
Aqoxy167s001 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 3.0e-19 99.8 153 47.1
VMungo1080G0249 Vigna mungo HOM05D002958 ORTHO05D003558 3.0e-19 99.8 145 42.8
ECA240G3077 Erigeron canadensis HOM05D002958 ORTHO05D003558 1.5e-18 97.4 196 39.3
SMO356G0618 Selaginella moellendorffii HOM05D002958 ORTHO05D003558 1.5e-18 97.4 216 36.6
Lj3g0007256 Lotus japonicus HOM05D002958 ORTHO05D003558 3.3e-18 96.3 145 46.2
Aqoxy1G02381 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 9.6e-18 94.7 165 42.4
ClCG05G009310 Citrullus lanatus HOM05D002958 ORTHO05D003558 2.1e-17 93.6 127 51.2
MELO3C019407.2 Cucumis melo HOM05D002958 ORTHO05D003558 2.1e-17 93.6 127 51.2
CsaV3_3G019470 Cucumis sativus L. HOM05D002958 ORTHO05D003558 4.7e-17 92.4 127 50.4
Sed0005351 Sechium edule HOM05D002958 ORTHO05D003558 1.1e-16 91.3 125 50.4
TAR627G0778 Trochodendron aralioides HOM05D002958 ORTHO05D003558 1.8e-16 90.5 147 41.5
CSS0011837 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 7.6e-15 85.1 152 38.8
COL.COLO4_36342 Corchorus olitorius HOM05D002958 ORTHO05D003558 8.4e-14 81.6 208 31.7
Hund02228 Selenicereus undatus HOM05D002958 ORTHO05D003558 1.4e-13 80.9 103 52.4
SEGI_08533 Sequoiadendron giganteum HOM05D002958 ORTHO05D003558 1.4e-13 80.9 142 39.4
SEGI_29603 Sequoiadendron giganteum HOM05D002958 ORTHO05D003558 1.4e-13 80.9 142 39.4
Zm00001eb127150 Zea mays HOM05D002958 ORTHO05D003558 2.4e-13 80.1 104 51.9
Pp3c4_28740 Physcomitrium patens HOM05D002958 ORTHO05D003558 3.2e-13 79.7 173 36.4
Os01g0101200 Oryza sativa ssp. japonica HOM05D002958 ORTHO05D003558 1.7e-11 73.9 140 37.9
SHI21529 Sapria himalayana HOM05D002958 ORTHO05D003558 5.1e-11 72.4 96 50.0
Cre01.g016528 Chlamydomonas reinhardtii HOM05D002958 ORTHO05D003558 3.1e-08 63.2 222 26.1
Dinv13401 Davidia involucrata HOM05D002958 ORTHO05D003558 1.2e-07 61.2 96 43.8
Dinv20183 Davidia involucrata HOM05D002958 ORTHO05D003558 7.6e-07 58.5 85 41.2
Hma1.2p1_2752F.1_g327890 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 9.9e-07 58.2 53 64.2
SMO146G0056 Selaginella moellendorffii HOM05D002958 ORTHO05D003558 1.7e-06 57.4 116 42.2
Sopen07g031250 Solanum pennellii HOM05D002958 ORTHO05D051257 2.2e-06 57.0 51 58.8
Cpa.g.sc80.76 Carica papaya HOM05D002958 ORTHO05D003558 3.8e-06 56.2 52 61.5
Ciclev10009308m.g Citrus clementina HOM05D002958 ORTHO05D003558 3.8e-06 56.2 55 58.2
Solyc07g063060.2 Solanum lycopersicum HOM05D002958 ORTHO05D051257 3.8e-06 56.2 59 50.8


User provided reference genes

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