Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 1.1e-139 500.0 254 100.0
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 4.5e-77 292.0 280 59.3
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 1.5e-75 287.0 287 56.8
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 1.0e-73 280.8 283 56.5
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 8.5e-68 261.2 285 52.3
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 2.5e-67 259.6 284 51.8
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 3.2e-67 259.2 284 52.5
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 5.5e-67 258.5 285 52.6
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 5.5e-67 258.5 287 51.2
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 2.7e-66 256.1 287 52.3
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 2.7e-66 256.1 285 51.2
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 2.7e-66 256.1 284 51.4
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 4.7e-66 255.4 286 51.4
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 8.0e-66 254.6 286 51.0
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 8.0e-66 254.6 286 51.0
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 8.0e-66 254.6 286 50.7
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 1.0e-65 254.2 283 51.2
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 1.4e-65 253.8 284 52.1
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.8e-65 253.4 286 50.3
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 2.3e-65 253.1 286 50.7
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 5.2e-65 251.9 283 50.9
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 5.2e-65 251.9 291 50.5
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 6.8e-65 251.5 287 50.2
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 1.2e-64 250.8 286 51.0
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.2e-64 250.8 281 50.5
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.2e-64 250.8 283 51.2
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 1.5e-64 250.4 300 48.7
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 1.5e-64 250.4 299 48.8
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.5e-64 250.4 285 49.8
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 2.6e-64 249.6 286 50.0
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 2.6e-64 249.6 284 50.7
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 3.4e-64 249.2 287 50.5
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 3.4e-64 249.2 284 50.4
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 3.4e-64 249.2 285 49.5
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 3.4e-64 249.2 284 51.1
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 5.7e-64 248.4 300 48.3
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 7.5e-64 248.1 286 49.3
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 7.5e-64 248.1 286 49.0
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 9.8e-64 247.7 284 49.6
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 1.3e-63 247.3 283 50.2
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 2.2e-63 246.5 286 49.3
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 3.7e-63 245.7 281 49.5
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 3.7e-63 245.7 287 49.1
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 3.7e-63 245.7 289 49.8
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 3.7e-63 245.7 291 48.5
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 8.3e-63 244.6 285 49.8
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 8.3e-63 244.6 291 49.1
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 1.1e-62 244.2 292 49.3
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 1.8e-62 243.4 285 49.1
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 2.4e-62 243.0 206 64.6
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 2.4e-62 243.0 284 50.4
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 3.1e-62 242.7 285 49.1
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 3.1e-62 242.7 284 50.0
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 4.1e-62 242.3 285 49.5
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 5.4e-62 241.9 285 50.2
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 7.0e-62 241.5 286 47.6
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 7.0e-62 241.5 286 50.0
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 9.2e-62 241.1 286 47.9
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 9.2e-62 241.1 285 48.8
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 1.6e-61 240.4 283 49.1
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 2.0e-61 240.0 285 49.1
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 2.0e-61 240.0 286 48.6
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 2.7e-61 239.6 285 49.1
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 2.7e-61 239.6 283 49.8
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.7e-61 239.6 283 49.8
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.5e-61 239.2 283 49.8
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 3.5e-61 239.2 288 48.6
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 3.5e-61 239.2 285 48.4
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 4.5e-61 238.8 285 48.8
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 5.9e-61 238.4 286 49.0
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 7.7e-61 238.0 285 48.4
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 7.7e-61 238.0 286 49.0
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 7.7e-61 238.0 286 49.7
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 7.7e-61 238.0 285 50.9
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.0e-60 237.7 283 49.5
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.0e-60 237.7 282 49.6
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 2.9e-60 236.1 283 49.1
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 5.0e-60 235.3 285 48.1
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 5.0e-60 235.3 285 48.1
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 6.6e-60 235.0 286 48.6
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 8.6e-60 234.6 284 48.6
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 8.6e-60 234.6 284 47.9
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 1.5e-59 233.8 284 48.6
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 2.5e-59 233.0 283 48.8
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 3.3e-59 232.6 283 48.8
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 9.5e-59 231.1 293 48.1
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.2e-58 230.7 282 48.2
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 1.2e-58 230.7 282 48.2
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 2.8e-58 229.6 284 47.2
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 4.7e-58 228.8 288 47.9
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 1.4e-57 227.3 284 46.5
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.8e-57 226.9 280 47.9
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 2.3e-57 226.5 286 46.2
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 2.3e-57 226.5 286 46.9
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 8.9e-57 224.6 237 53.6
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 1.5e-56 223.8 280 46.4
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 2.0e-56 223.4 293 46.8
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 2.6e-56 223.0 282 46.5
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 3.4e-56 222.6 280 47.5
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 5.7e-56 221.9 288 46.2
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 5.7e-56 221.9 280 46.4
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 1.7e-55 220.3 285 46.3
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 2.9e-55 219.5 282 45.7
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 4.1e-54 215.7 282 45.4
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 2.7e-53 213.0 286 45.1
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 2.7e-53 213.0 214 54.7
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 8.0e-50 201.4 260 47.7
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 6.8e-49 198.4 286 45.1
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 3.7e-47 192.6 264 44.7
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 1.9e-46 190.3 298 42.3
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 1.3e-44 184.1 286 43.7
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 8.6e-44 181.4 302 39.1
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 4.3e-43 179.1 290 40.7
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 1.6e-42 177.2 287 39.4
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.6e-42 177.2 286 39.9
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 4.7e-42 175.6 283 38.2
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 6.2e-42 175.3 287 39.4
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 5.2e-41 172.2 276 39.9
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 7.8e-29 131.7 97 66.0
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 2.1e-26 123.6 310 31.6
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 4.8e-18 95.9 97 50.5
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 1.3e-15 87.8 92 54.3


User provided reference genes

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