Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 3.0e-299 1031.2 556 100.0
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.8e-115 420.6 600 48.8
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 2.5e-112 410.2 508 54.1
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 8.4e-76 288.9 567 40.6
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 7.1e-75 285.8 603 38.0
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 5.6e-72 276.2 612 37.6
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 9.6e-72 275.4 508 40.0
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 1.6e-71 274.6 388 47.7
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.8e-71 273.1 572 38.5
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 8.1e-71 272.3 343 49.9
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 8.1e-71 272.3 581 38.2
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.8e-70 271.2 609 35.6
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 1.8e-70 271.2 493 40.6
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 3.1e-70 270.4 633 35.7
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 5.3e-70 269.6 634 36.1
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.2e-69 268.5 569 38.1
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 2.6e-69 267.3 585 37.1
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 4.5e-69 266.5 637 34.9
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 4.5e-69 266.5 355 49.6
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 7.6e-69 265.8 544 39.3
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 1.3e-68 265.0 490 39.2
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.3e-68 265.0 610 34.4
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.8e-68 263.5 581 37.9
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 3.8e-68 263.5 528 38.1
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 6.4e-68 262.7 569 37.8
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 8.4e-68 262.3 578 36.5
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 8.4e-68 262.3 540 37.2
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.4e-67 261.5 346 49.4
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.4e-67 261.5 528 36.9
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.9e-67 261.2 580 35.5
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.4e-67 260.8 501 39.5
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 3.2e-67 260.4 564 37.2
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 4.2e-67 260.0 493 39.4
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 7.1e-67 259.2 646 34.8
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.6e-66 258.1 262 57.6
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.1e-66 257.7 612 35.9
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 6.0e-66 256.1 641 35.9
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 7.9e-66 255.8 609 34.8
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.0e-65 255.4 530 38.3
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 1.0e-65 255.4 544 38.1
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.0e-65 255.4 367 45.5
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 1.3e-65 255.0 490 38.4
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.3e-65 255.0 326 48.5
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 3.0e-65 253.8 530 37.5
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 3.0e-65 253.8 288 53.5
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 3.0e-65 253.8 519 37.8
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 3.9e-65 253.4 631 35.5
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 5.1e-65 253.1 270 54.4
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 8.7e-65 252.3 490 38.2
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 8.7e-65 252.3 255 57.6
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 8.7e-65 252.3 495 40.6
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 8.7e-65 252.3 264 55.7
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.1e-64 251.9 522 39.7
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.1e-64 251.9 573 37.3
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.5e-64 251.5 528 37.3
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 1.9e-64 251.1 567 36.3
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 4.3e-64 250.0 524 38.2
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 5.6e-64 249.6 513 36.8
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 9.6e-64 248.8 326 50.0
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.3e-63 248.4 514 36.8
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 2.1e-63 247.7 635 33.9
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 2.8e-63 247.3 480 40.2
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 2.8e-63 247.3 608 35.4
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.8e-63 247.3 284 54.2
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 4.8e-63 246.5 250 56.4
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.8e-63 246.5 388 42.8
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 6.2e-63 246.1 533 37.7
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 8.1e-63 245.7 567 36.9
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 8.1e-63 245.7 568 37.0
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 1.1e-62 245.4 574 35.2
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.4e-62 244.2 547 37.1
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 9.0e-62 242.3 606 35.1
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 9.0e-62 242.3 563 37.1
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.5e-61 241.5 615 34.8
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 1.5e-61 241.5 345 48.1
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 7.6e-61 239.2 259 55.6
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 7.6e-61 239.2 609 34.8
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 9.9e-61 238.8 292 50.7
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 1.7e-60 238.0 525 37.7
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 1.7e-60 238.0 631 35.2
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 2.2e-60 237.7 291 49.1
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.2e-60 237.7 520 36.7
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.2e-60 237.7 585 35.2
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 2.2e-60 237.7 283 52.7
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 4.9e-60 236.5 582 35.4
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 6.4e-60 236.1 519 38.5
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 8.4e-60 235.7 629 35.3
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 8.4e-60 235.7 307 50.2
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 1.9e-59 234.6 378 43.9
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.2e-59 233.4 627 33.3
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 7.1e-59 232.6 565 35.2
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 7.1e-59 232.6 294 50.7
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.6e-58 231.5 505 36.4
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 4.6e-58 229.9 374 43.0
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 1.3e-57 228.4 624 32.9
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 1.3e-57 228.4 424 40.8
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 8.7e-57 225.7 504 35.9
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 3.3e-56 223.8 644 31.8
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 4.3e-56 223.4 521 35.1
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 4.3e-56 223.4 560 35.0
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 2.8e-55 220.7 530 35.5
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 2.8e-55 220.7 510 33.9
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 3.7e-55 220.3 379 45.9
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 6.2e-55 219.5 486 36.6
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.1e-54 218.8 297 47.5
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 9.0e-54 215.7 579 33.0
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.2e-53 215.3 232 55.6
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.2e-53 215.3 232 52.6
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 3.4e-53 213.8 497 34.4
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 2.2e-52 211.1 214 59.3
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 2.2e-52 211.1 546 35.2
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 8.4e-52 209.1 388 40.2
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 4.2e-51 206.8 493 33.5
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 4.2e-51 206.8 578 32.9
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 1.2e-50 205.3 537 35.4
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.2e-50 205.3 237 54.4
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.2e-50 205.3 237 54.4
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 2.7e-50 204.1 643 31.7
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 2.7e-50 204.1 685 29.3
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.0e-49 202.2 291 47.1
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 1.8e-49 201.4 436 36.7
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 2.3e-49 201.1 330 43.3
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 1.5e-48 198.4 571 32.9
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 1.3e-47 195.3 552 33.3
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.1e-46 190.7 499 33.1
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.1e-46 190.3 260 44.2
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 2.9e-44 184.1 634 32.2
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 5.0e-44 183.3 329 39.8
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 5.0e-44 183.3 340 40.6
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 5.5e-43 179.9 340 40.3
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 2.7e-42 177.6 321 39.9
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 7.9e-42 176.0 627 29.8
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.9e-41 173.7 261 41.8
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 6.3e-39 166.4 530 29.2
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.4e-38 165.2 180 55.6
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 2.4e-38 164.5 180 55.0
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.5e-37 161.8 231 42.0
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 3.4e-37 160.6 192 51.0
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.1e-35 155.6 216 45.8
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 7.2e-35 152.9 190 49.5
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 2.3e-33 147.9 470 30.4
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.0e-33 147.5 476 31.9
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 9.7e-32 142.5 229 36.2
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.4e-30 138.7 140 55.7
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 2.4e-30 137.9 491 29.1
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 5.9e-29 133.3 410 32.7
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 9.4e-27 125.9 187 43.9
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.2e-26 125.6 245 38.8
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 3.9e-25 120.6 425 29.9
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.1e-24 119.0 528 28.2
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 1.8e-22 111.7 141 50.4
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 1.8e-22 111.7 222 37.8
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 5.3e-22 110.2 287 30.0
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 1.5e-19 102.1 175 41.1
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 2.5e-19 101.3 118 53.4
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.1e-18 96.7 191 37.2
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 1.0e-17 95.9 123 53.7
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.5e-16 92.0 196 34.2
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 9.1e-14 82.8 91 54.9
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 2.0e-13 81.6 79 59.5
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 1.7e-12 78.6 90 48.9
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 3.6e-10 70.9 59 62.7
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.4e-09 68.9 76 55.3
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 9.8e-08 62.8 116 39.7
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.3e-07 62.4 97 41.2
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 1.3e-07 62.4 102 39.2


User provided reference genes

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