Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0327571 Helianthus annuus HOM05D003927 ORTHO05D227544 2.1e-36 155.2 79 100.0
HanXRQChr14g0440241 Helianthus annuus HOM05D003927 ORTHO05D004905 4.0e-16 87.8 46 91.3
ECA238G4411 Erigeron canadensis HOM05D003927 ORTHO05D004905 1.7e-14 82.4 46 87.0
CSS0033159 Camellia sinensis var. sinensis HOM05D003927 ORTHO05D004905 2.9e-14 81.6 46 80.4
HanXRQChr15g0483481 Helianthus annuus HOM05D003927 ORTHO05D004905 8.4e-14 80.1 46 82.6
A09p35130 Brassica napus HOM05D003927 ORTHO05D004905 2.4e-13 78.6 46 76.1
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 4.2e-13 77.8 46 78.3
Lsat_1_v5_gn_2_61101 Lactuca sativa HOM05D003927 ORTHO05D004905 4.2e-13 77.8 46 80.4
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 4.2e-13 77.8 46 78.3
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 4.2e-13 77.8 46 78.3
THA.LOC104814353 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 4.2e-13 77.8 46 76.1
Actinidia22422 Actinidia chinensis HOM05D003927 ORTHO05D004905 5.4e-13 77.4 46 78.3
Manes.03G074000 Manihot esculenta HOM05D003927 ORTHO05D004905 5.4e-13 77.4 46 76.1
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 5.4e-13 77.4 46 78.3
CARHR030580 Cardamine hirsuta HOM05D003927 ORTHO05D004905 9.3e-13 76.6 46 76.1
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 1.2e-12 76.3 46 73.9
Aa31LG9G16190 Aethionema arabicum HOM05D003927 ORTHO05D004905 1.6e-12 75.9 46 76.1
AL4G31040 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 1.6e-12 75.9 46 76.1
AL1G45460 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 2.1e-12 75.5 46 73.9
AT1G31070 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 2.1e-12 75.5 46 73.9
BcaB04g18183 Brassica carinata HOM05D003927 ORTHO05D004905 2.1e-12 75.5 46 73.9
BcaC05g27140 Brassica carinata HOM05D003927 ORTHO05D004905 2.1e-12 75.5 46 73.9
C05p30260 Brassica napus HOM05D003927 ORTHO05D004905 2.1e-12 75.5 46 73.9
BolC5t31766H Brassica oleracea HOM05D003927 ORTHO05D004905 2.1e-12 75.5 46 73.9
BraA09t39043Z Brassica rapa HOM05D003927 ORTHO05D004905 2.1e-12 75.5 46 73.9
Carub.0001s2946 Capsella rubella HOM05D003927 ORTHO05D004905 2.1e-12 75.5 46 73.9
Thhalv10007394m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 2.1e-12 75.5 46 73.9
Nn7g38278 Nelumbo nucifera HOM05D003927 ORTHO05D004905 2.1e-12 75.5 46 76.1
Sp1g26910 Schrenkiella parvula HOM05D003927 ORTHO05D004905 2.1e-12 75.5 46 73.9
AT2G35020 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 2.7e-12 75.1 46 76.1
TAR626G1704 Trochodendron aralioides HOM05D003927 ORTHO05D004905 2.7e-12 75.1 46 73.9
AUR62037029 Chenopodium quinoa HOM05D003927 ORTHO05D004905 3.5e-12 74.7 46 76.1
Haze_06142 Corylus avellana HOM05D003927 ORTHO05D004905 3.5e-12 74.7 46 76.1
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 3.5e-12 74.7 46 73.9
Rhsim13G0129600 Rhododendron simsii HOM05D003927 ORTHO05D004905 3.5e-12 74.7 46 71.7
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 3.5e-12 74.7 46 73.9
Ah.08g210510 Amaranthus hybridus HOM05D003927 ORTHO05D004905 4.6e-12 74.3 46 71.7
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 4.6e-12 74.3 46 71.7
A05p10690 Brassica napus HOM05D003927 ORTHO05D004905 4.6e-12 74.3 46 73.9
A08p10790 Brassica napus HOM05D003927 ORTHO05D004905 4.6e-12 74.3 46 71.7
BraA05t20009Z Brassica rapa HOM05D003927 ORTHO05D004905 4.6e-12 74.3 46 73.9
BraA08t33076Z Brassica rapa HOM05D003927 ORTHO05D004905 4.6e-12 74.3 46 71.7
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 4.6e-12 74.3 46 73.9
Potri.003G074700 Populus trichocarpa HOM05D003927 ORTHO05D004905 4.6e-12 74.3 46 71.7
TWI15G0787 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 4.6e-12 74.3 46 69.6
BcaB07g32771 Brassica carinata HOM05D003927 ORTHO05D004905 6.0e-12 73.9 46 73.9
BcaC07g37780 Brassica carinata HOM05D003927 ORTHO05D004905 6.0e-12 73.9 46 71.7
BolC8t48168H Brassica oleracea HOM05D003927 ORTHO05D004905 6.0e-12 73.9 46 71.7
Carub.0004s1671 Capsella rubella HOM05D003927 ORTHO05D004905 6.0e-12 73.9 46 73.9
CiPaw.09G074500 Carya illinoinensis HOM05D003927 ORTHO05D004905 6.0e-12 73.9 46 76.1
Dinv10533 Davidia involucrata HOM05D003927 ORTHO05D004905 6.0e-12 73.9 46 73.9
Eucgr.E04308 Eucalyptus grandis HOM05D003927 ORTHO05D004905 6.0e-12 73.9 56 60.7
Lj2A344G38 Lonicera japonica HOM05D003927 ORTHO05D004905 6.0e-12 73.9 46 73.9
BcaC02g11582 Brassica carinata HOM05D003927 ORTHO05D004905 7.9e-12 73.6 46 73.9
C04p13780 Brassica napus HOM05D003927 ORTHO05D004905 7.9e-12 73.6 46 73.9
BolC4t22968H Brassica oleracea HOM05D003927 ORTHO05D004905 7.9e-12 73.6 46 73.9
TWI38G0647 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 7.9e-12 73.6 46 69.6
Aa31LG2G15040 Aethionema arabicum HOM05D003927 ORTHO05D004905 1.0e-11 73.2 46 71.7
CARHR129180 Cardamine hirsuta HOM05D003927 ORTHO05D004905 1.0e-11 73.2 46 76.1
AUR62006193 Chenopodium quinoa HOM05D003927 ORTHO05D004905 1.0e-11 73.2 46 73.9
CANSAT35G1049 Cannabis sativa HOM05D003927 ORTHO05D004905 1.3e-11 72.8 46 76.1
Ciclev10014997m.g Citrus clementina HOM05D003927 ORTHO05D004905 1.3e-11 72.8 46 67.4
Potri.001G159700 Populus trichocarpa HOM05D003927 ORTHO05D004905 1.3e-11 72.8 61 57.4
Sabra01G0132300 Salix brachista HOM05D003927 ORTHO05D004905 1.3e-11 72.8 61 57.4
VMungo0251G3294 Vigna mungo HOM05D003927 ORTHO05D004905 1.3e-11 72.8 46 76.1
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 1.8e-11 72.4 46 67.4
BcaB02g09488 Brassica carinata HOM05D003927 ORTHO05D004905 1.8e-11 72.4 46 71.7
QL11p013470 Quercus lobata HOM05D003927 ORTHO05D004905 1.8e-11 72.4 61 62.3
GSVIVG01006086001 Vitis vinifera HOM05D003927 ORTHO05D004905 1.8e-11 72.4 46 73.9
Glyma.05G132100 Glycine max HOM05D003927 ORTHO05D004905 2.3e-11 72.0 61 62.3
Hma1.2p1_0510F.1_g168820 Hydrangea macrophylla HOM05D003927 ORTHO05D004905 2.3e-11 72.0 46 76.1
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 2.3e-11 72.0 46 73.9
GSVIVG01012124001 Vitis vinifera HOM05D003927 ORTHO05D004905 2.3e-11 72.0 46 71.7
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 3.0e-11 71.6 46 73.9
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 3.0e-11 71.6 46 73.9
Duzib132G1257 Durio zibethinus HOM05D003927 ORTHO05D004905 3.0e-11 71.6 46 69.6
Migut.M01998 Erythranthe guttata HOM05D003927 ORTHO05D004905 3.0e-11 71.6 46 71.7
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 3.0e-11 71.6 46 69.6
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 3.0e-11 71.6 46 69.6
Prupe.4G115400 Prunus persica HOM05D003927 ORTHO05D004905 3.0e-11 71.6 46 73.9
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 3.0e-11 71.6 46 67.4
SGA_v2.0_scaffold175G39352 Striga asiatica HOM05D003927 ORTHO05D004905 3.0e-11 71.6 46 67.4
FvH4_3g12660 Fragaria vesca HOM05D003927 ORTHO05D004905 3.9e-11 71.2 46 73.9
FAN16G1436 Fragaria x ananassa HOM05D003927 ORTHO05D004905 3.9e-11 71.2 46 73.9
FAN21G3157 Fragaria x ananassa HOM05D003927 ORTHO05D004905 3.9e-11 71.2 46 73.9
FAN25G3197 Fragaria x ananassa HOM05D003927 ORTHO05D004905 3.9e-11 71.2 46 73.9
Glyma.08G086700 Glycine max HOM05D003927 ORTHO05D004905 3.9e-11 71.2 61 62.3
MD05G1248900 Malus domestica HOM05D003927 ORTHO05D004905 3.9e-11 71.2 46 73.9
MD10G1229400 Malus domestica HOM05D003927 ORTHO05D004905 3.9e-11 71.2 46 73.9
Sabra03G0045400 Salix brachista HOM05D003927 ORTHO05D004905 3.9e-11 71.2 46 65.2
Phvul.002G190700 Phaseolus vulgaris HOM05D003927 ORTHO05D004905 5.1e-11 70.9 61 60.7
Sp4g17300 Schrenkiella parvula HOM05D003927 ORTHO05D004905 5.1e-11 70.9 46 71.7
EL10Ac7g16905 Beta vulgaris HOM05D003927 ORTHO05D004905 6.7e-11 70.5 46 67.4
Dinv29312 Davidia involucrata HOM05D003927 ORTHO05D004905 6.7e-11 70.5 45 71.1
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 6.7e-11 70.5 46 71.7
Cpa.g.sc30.136 Carica papaya HOM05D003927 ORTHO05D004905 8.7e-11 70.1 46 69.6
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 8.7e-11 70.1 46 67.4
HPP92_026365 Vanilla planifolia HOM05D003927 ORTHO05D004905 8.7e-11 70.1 46 69.6
ClCG01G025630 Citrullus lanatus HOM05D003927 ORTHO05D004905 1.1e-10 69.7 46 67.4
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 1.1e-10 69.7 61 57.4
MELO3C007022.2 Cucumis melo HOM05D003927 ORTHO05D004905 1.1e-10 69.7 46 67.4
CsaV3_6G052860 Cucumis sativus L. HOM05D003927 ORTHO05D004905 1.1e-10 69.7 46 67.4
DCAR_003771 Daucus carota HOM05D003927 ORTHO05D004905 1.1e-10 69.7 46 73.9
Sed0013384 Sechium edule HOM05D003927 ORTHO05D004905 1.1e-10 69.7 46 67.4
TAR628G0742 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.1e-10 69.7 46 69.6
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 2.5e-10 68.6 46 65.2
Lj4g0018518 Lotus japonicus HOM05D003927 ORTHO05D004905 2.5e-10 68.6 46 69.6
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 2.5e-10 68.6 46 67.4
Gorai.005G268300 Gossypium raimondii HOM05D003927 ORTHO05D004905 3.3e-10 68.2 46 63.0
Zm00001eb413790 Zea mays HOM05D003927 ORTHO05D004905 3.3e-10 68.2 46 65.2
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 4.3e-10 67.8 46 63.0
PSO541G2426 Papaver somniferum HOM05D003927 ORTHO05D004905 4.3e-10 67.8 46 65.2
PSO675G6709 Papaver somniferum HOM05D003927 ORTHO05D004905 4.3e-10 67.8 46 65.2
PGR042G2298 Punica granatum HOM05D003927 ORTHO05D004905 4.3e-10 67.8 46 69.6
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 4.3e-10 67.8 64 57.8
TAR624G0604 Trochodendron aralioides HOM05D003927 ORTHO05D004905 4.3e-10 67.8 46 65.2
HPP92_016424 Vanilla planifolia HOM05D003927 ORTHO05D004905 4.3e-10 67.8 46 67.4
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 5.6e-10 67.4 61 55.7
Lj1C1147G9 Lonicera japonica HOM05D003927 ORTHO05D004905 5.6e-10 67.4 46 67.4
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 5.6e-10 67.4 61 59.0
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 7.4e-10 67.0 54 53.7
Thhalv10016553m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 7.4e-10 67.0 46 71.7
Lalb_Chr07g0188401 Lupinus albus HOM05D003927 ORTHO05D004905 7.4e-10 67.0 46 69.6
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 7.4e-10 67.0 46 67.4
THA.LOC104798559 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 9.6e-10 66.6 53 62.3
ATR0763G183 Amborella trichopoda HOM05D003927 ORTHO05D004905 1.3e-09 66.2 46 60.9
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 1.6e-09 65.9 61 55.7
Psat7g088440 Pisum sativum HOM05D003927 ORTHO05D004905 8.1e-09 63.5 61 55.7
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 1.8e-08 62.4 46 63.0
Zm00001eb018150 Zea mays HOM05D003927 ORTHO05D001645 3.1e-08 61.6 46 60.9
Zm00001eb430780 Zea mays HOM05D003927 ORTHO05D004905 3.1e-08 61.6 46 63.0
Zm00001eb070940 Zea mays HOM05D003927 ORTHO05D004905 1.2e-07 59.7 46 60.9
Cfa000676 Carpinus fangiana HOM05D003927 ORTHO05D004905 9.9e-07 56.6 46 67.4
Aqoxy3G04338 Aquilegia oxysepala HOM05D003927 ORTHO05D004905 3.8e-06 54.7 46 56.5


User provided reference genes

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