Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 2.8e-46 188.3 102 100.0
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 2.8e-46 188.3 102 100.0
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 2.8e-46 188.3 102 100.0
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 2.8e-46 188.3 102 100.0
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 2.8e-46 188.3 102 100.0
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 2.8e-46 188.3 102 100.0
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 2.8e-46 188.3 102 100.0
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 2.8e-46 188.3 102 100.0
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 2.8e-46 188.3 102 100.0
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 2.8e-46 188.3 102 100.0
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 3.7e-46 188.0 102 99.0
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 8.2e-46 186.8 102 99.0
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 1.5e-42 176.0 102 93.1
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 4.7e-41 171.0 102 90.2
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 4.7e-41 171.0 102 90.2
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 4.7e-41 171.0 102 90.2
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 8.0e-41 170.2 102 90.2
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 2.3e-40 168.7 102 90.2
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 3.0e-40 168.3 102 88.2
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 3.0e-40 168.3 102 88.2
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 3.0e-40 168.3 102 88.2
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 3.0e-40 168.3 102 88.2
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 3.0e-40 168.3 102 88.2
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 3.0e-40 168.3 102 88.2
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 3.0e-40 168.3 102 90.2
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 3.0e-40 168.3 102 88.2
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 3.0e-40 168.3 102 88.2
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 3.0e-40 168.3 102 88.2
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 3.0e-40 168.3 102 88.2
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 3.0e-40 168.3 102 88.2
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 88.2
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 88.2
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 88.2
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 88.2
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 88.2
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 88.2
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 88.2
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 88.2
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 88.2
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 88.2
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 89.2
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 89.2
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 4.0e-40 167.9 102 89.2
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 6.7e-40 167.2 100 89.0
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 6.7e-40 167.2 102 89.2
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 1.2e-39 166.4 102 87.3
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 1.2e-39 166.4 102 87.3
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-39 166.4 102 87.3
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.0e-39 165.6 102 88.2
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 2.6e-39 165.2 102 88.2
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 2.6e-39 165.2 102 88.2
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 4.4e-39 164.5 102 85.3
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 5.7e-39 164.1 102 87.3
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 1.3e-38 162.9 102 87.3
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.7e-38 162.5 102 86.3
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 2.2e-38 162.2 102 84.3
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 8.2e-38 160.2 99 87.9
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 1.8e-37 159.1 93 91.4
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 5.3e-37 157.5 101 82.2
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 2.7e-36 155.2 102 83.3
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.7e-36 155.2 102 83.3
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 4.5e-36 154.5 102 82.4
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 3.8e-35 151.4 105 83.8
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 3.8e-35 151.4 105 83.8
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 5.0e-35 151.0 101 81.2
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 5.0e-35 151.0 99 82.8
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 1.1e-34 149.8 102 78.4
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 1.5e-34 149.4 91 87.9
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.3e-32 142.1 82 92.7
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 1.7e-30 136.0 86 88.4
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 8.3e-30 133.7 87 85.1
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 8.3e-30 133.7 87 85.1
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.0e-28 129.0 89 78.7
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 1.0e-27 126.7 70 100.0
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 1.0e-27 126.7 70 100.0
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-27 125.2 84 82.1
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.8e-27 124.8 89 76.4
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 3.8e-27 124.8 119 64.7
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.7e-25 117.9 83 78.3
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.3e-24 115.5 69 88.4
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 4.0e-24 114.8 70 90.0
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 4.0e-24 114.8 70 90.0
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 4.0e-24 114.8 70 90.0
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 6.8e-24 114.0 70 90.0
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.5e-23 112.8 68 88.2
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.3e-22 109.8 70 87.1
HanXRQChr11g0345201 Helianthus annuus HOM05D004570 ORTHO05D005494 1.3e-22 109.8 59 96.6
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 2.2e-22 109.0 77 74.0
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 2.8e-22 108.6 106 61.3
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 6.3e-22 107.5 62 88.7
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 8.3e-22 107.1 122 55.7
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 7.0e-21 104.0 70 80.0
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 1.6e-20 102.8 72 79.2
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 1.6e-20 102.8 72 79.2
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 2.7e-20 102.1 60 86.7
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 5.9e-20 100.9 65 87.7
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 3.3e-18 95.1 54 94.4
arahy.Tifrunner.gnm1.ann1.S91IH0 Arachis hypogaea HOM05D004570 ORTHO05D005494 7.3e-18 94.0 55 87.3
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 3.6e-17 91.7 53 94.3
CsaV3_7G024620 Cucumis sativus L. HOM05D004570 ORTHO05D005494 4.7e-17 91.3 56 83.9
Gorai.013G170400 Gossypium raimondii HOM05D004570 ORTHO05D005494 4.7e-17 91.3 59 81.4
Lalb_Chr20g0115501 Lupinus albus HOM05D004570 ORTHO05D005494 1.8e-16 89.4 59 83.1
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 3.0e-16 88.6 56 85.7
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 5.2e-16 87.8 81 67.9
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 2.0e-15 85.9 48 97.9
BolC9t53164H Brassica oleracea HOM05D004570 ORTHO05D005494 4.1e-13 78.2 51 76.5
BolC8t52433H Brassica oleracea HOM05D004570 ORTHO05D005494 1.0e-11 73.6 41 87.8
BraSC58t46492Z Brassica rapa HOM05D004570 ORTHO05D005494 1.3e-11 73.2 45 80.0
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 9.5e-10 67.0 40 90.0
arahy.Tifrunner.gnm1.ann1.IY5TEH Arachis hypogaea HOM05D011450 ORTHO05D011017 6.2e-09 64.3 46 73.9
BolC4t25866H Brassica oleracea HOM05D004570 ORTHO05D005494 8.0e-09 63.9 37 83.8
SMO086G0030 Selaginella moellendorffii HOM05D004570 ORTHO05D005494 6.8e-08 60.8 74 51.4


User provided reference genes

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