Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-33 145.2 67 100.0
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-33 145.2 67 100.0
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-33 145.2 67 100.0
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-33 145.2 67 100.0
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-33 145.2 67 100.0
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-33 145.2 67 100.0
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-33 145.2 67 100.0
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-33 145.2 67 100.0
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-33 145.2 67 100.0
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 5.2e-33 143.7 67 98.5
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 2.6e-32 141.4 67 98.5
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 4.9e-31 137.1 62 100.0
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 4.9e-31 137.1 62 100.0
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 2.4e-30 134.8 67 92.5
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.7e-29 131.3 67 86.6
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.7e-29 131.3 67 86.6
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 1.0e-28 129.4 67 86.6
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 1.3e-28 129.0 67 88.1
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.3e-28 129.0 67 85.1
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 1.7e-28 128.6 67 86.6
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.3e-28 128.3 67 85.1
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 86.6
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 3.9e-28 127.5 67 83.6
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 3.9e-28 127.5 67 86.6
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 3.9e-28 127.5 67 86.6
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 3.9e-28 127.5 67 86.6
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 3.9e-28 127.5 67 86.6
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 3.9e-28 127.5 67 86.6
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 6.6e-28 126.7 67 82.1
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 82.1
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 1.1e-27 125.9 67 82.1
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 83.6
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 80.6
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 83.6
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 2.5e-27 124.8 67 82.1
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 2.5e-27 124.8 67 82.1
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 82.1
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 83.6
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 83.6
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 83.6
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 83.6
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 83.6
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 80.6
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 4.3e-27 124.0 69 84.1
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 9.6e-27 122.9 67 80.6
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 1.3e-26 122.5 67 80.6
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 1.3e-26 122.5 67 79.1
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 1.6e-26 122.1 65 81.5
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.6e-26 122.1 67 80.6
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 2.8e-26 121.3 67 82.1
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 3.6e-26 120.9 62 87.1
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 4.8e-26 120.6 66 83.3
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 6.2e-26 120.2 67 82.1
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 2.4e-25 118.2 67 82.1
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 9.0e-25 116.3 62 80.6
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 1.3e-23 112.5 67 77.6
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 1.3e-23 112.5 67 77.6
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 3.8e-23 110.9 68 76.5
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 3.8e-23 110.9 68 76.5
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 6.4e-23 110.2 67 76.1
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 4.2e-22 107.5 67 73.1
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 4.2e-22 107.5 67 76.1
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 4.2e-22 107.5 61 78.7
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 7.1e-22 106.7 67 73.1
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 7.1e-22 106.7 67 73.1
HanXRQChr00c0557g0575791 Helianthus annuus HOM05D007549 ORTHO05D009532 9.3e-22 106.3 51 98.0
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 1.6e-21 105.5 62 75.8
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 3.5e-21 104.4 47 100.0
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 6.0e-21 103.6 67 76.1
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 3.9e-20 100.9 56 78.6
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 2.5e-19 98.2 67 68.7
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 2.8e-18 94.7 59 71.2
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.4e-17 91.7 67 61.2
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 6.9e-17 90.1 67 61.2
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 4.5e-16 87.4 67 62.7
Gohir.D11G284350 Gossypium hirsutum HOM05D007549 ORTHO05D009532 8.4e-15 83.2 67 61.2
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.2e-14 80.9 67 59.7
Gohir.A07G175856 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.5e-14 80.5 67 59.7
TPR.G34467 Trifolium pratense HOM05D007549 ORTHO05D009532 5.5e-14 80.5 50 70.0
Hund31442 Selenicereus undatus HOM05D007549 ORTHO05D009532 1.2e-13 79.3 45 80.0
Lalb_Chr23g0274351 Lupinus albus HOM05D007549 ORTHO05D009532 4.6e-13 77.4 51 72.5
MCO12G297 Micromonas commoda HOM05D007549 ORTHO05D009532 5.1e-12 73.9 66 54.5
PRCOL_00001223 Prasinoderma coloniale HOM05D007549 ORTHO05D009532 2.8e-10 68.2 72 54.2
BraSC58t46430Z Brassica rapa HOM05D007549 ORTHO05D009532 5.3e-09 63.9 37 73.0
Nitab4.5_0011882g0050 Nicotiana tabacum HOM05D008505 ORTHO05D010735 5.3e-09 63.9 38 76.3
Cre10.g462950 Chlamydomonas reinhardtii HOM05D007549 ORTHO05D009532 5.8e-08 60.5 65 47.7


User provided reference genes

Program Settings