Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-50 203.0 101 100.0
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-50 203.0 101 100.0
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-50 203.0 101 100.0
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-50 203.0 101 100.0
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-50 203.0 101 100.0
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-50 203.0 101 100.0
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-50 203.0 101 100.0
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-50 203.0 101 100.0
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-50 203.0 101 100.0
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-50 203.0 101 100.0
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 1.0e-48 196.4 101 96.0
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 1.0e-48 196.4 101 96.0
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 8.7e-48 193.4 101 96.0
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 1.5e-47 192.6 101 94.1
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.6e-47 190.7 101 95.0
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.6e-47 190.7 101 95.0
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.6e-47 190.7 101 95.0
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 5.6e-47 190.7 101 95.0
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 5.6e-47 190.7 101 92.1
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 95.0
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 92.1
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.1e-46 188.7 101 93.1
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 2.1e-46 188.7 101 93.1
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 93.1
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 92.1
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 92.1
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 3.7e-46 188.0 101 91.1
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 1.1e-45 186.4 101 91.1
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 1.1e-45 186.4 101 91.1
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.4e-45 186.0 101 92.1
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 2.4e-45 185.3 101 91.1
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 2.4e-45 185.3 101 91.1
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 3.1e-45 184.9 101 91.1
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 3.1e-45 184.9 101 91.1
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 5.3e-45 184.1 101 90.1
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 5.3e-45 184.1 101 90.1
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 5.3e-45 184.1 101 90.1
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 5.3e-45 184.1 101 90.1
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 5.3e-45 184.1 101 90.1
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 5.3e-45 184.1 101 90.1
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 5.3e-45 184.1 101 90.1
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 5.3e-45 184.1 101 90.1
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 5.3e-45 184.1 101 90.1
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 5.3e-45 184.1 101 90.1
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 5.3e-45 184.1 99 93.9
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 5.3e-45 184.1 99 93.9
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 5.3e-45 184.1 99 93.9
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 6.9e-45 183.7 101 90.1
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 4.5e-44 181.0 101 90.1
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 4.9e-43 177.6 99 88.9
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 6.5e-43 177.2 101 87.1
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 7.1e-42 173.7 101 88.1
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 3.5e-41 171.4 97 86.6
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 1.0e-40 169.9 101 88.1
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 1.3e-40 169.5 94 89.4
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 1.3e-40 169.5 88 93.2
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 1.8e-40 169.1 101 85.1
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 3.0e-40 168.3 101 84.2
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 3.9e-40 167.9 98 86.7
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 6.7e-40 167.2 101 83.2
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 6.7e-40 167.2 101 83.2
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 2.5e-39 165.2 101 81.2
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 4.3e-39 164.5 100 85.0
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 4.3e-39 164.5 99 84.8
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 1.3e-38 162.9 101 83.2
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 6.3e-38 160.6 86 94.2
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 8.2e-38 160.2 86 94.2
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 1.2e-36 156.4 86 91.9
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 7.6e-36 153.7 101 75.2
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 1.2e-33 146.4 93 80.6
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 7.9e-33 143.7 70 95.7
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 1.8e-32 142.5 79 91.1
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 3.0e-32 141.7 74 90.5
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 1.9e-31 139.0 94 73.4
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 7.4e-31 137.1 74 90.5
Peaxi162Scf00455g00046 Petunia axillaris HOM05D000388 ORTHO05D009843 4.8e-30 134.4 76 89.5
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 4.5e-28 127.9 72 86.1
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 1.3e-27 126.3 99 62.6
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 1.4e-26 122.9 56 100.0
Gohir.A07G155821 Gossypium hirsutum HOM05D000388 ORTHO05D009843 9.4e-26 120.2 72 86.1
EL10As15g24141 Beta vulgaris HOM05D000388 ORTHO05D009843 1.3e-22 109.8 64 90.6
HanXRQChr16g0506261 Helianthus annuus HOM05D000388 ORTHO05D009843 1.1e-21 106.7 57 98.2
Nitab4.5_0002607g0050 Nicotiana tabacum HOM05D000388 ORTHO05D009843 2.4e-21 105.5 62 90.3
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 2.6e-20 102.1 56 85.7
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 1.0e-19 100.1 48 93.8
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 7.2e-18 94.0 91 62.6
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 2.7e-17 92.0 48 89.6
Hund29903 Selenicereus undatus HOM05D000388 ORTHO05D009843 1.1e-13 80.1 51 88.2
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 1.2e-12 76.6 95 49.5
Medtr8g079770 Medicago truncatula HOM05D000388 ORTHO05D009843 2.6e-12 75.5 51 78.4
Sopen10g013070 Solanum pennellii HOM05D000388 ORTHO05D009843 2.9e-11 72.0 33 93.9
arahy.Tifrunner.gnm1.ann1.90KAHV Arachis hypogaea HOM05D000388 ORTHO05D009843 1.5e-10 69.7 97 49.5
BolC9t56932H Brassica oleracea HOM05D000388 ORTHO05D009843 3.0e-08 62.0 27 100.0
arahy.Tifrunner.gnm1.ann1.EPB7VR Arachis hypogaea HOM05D000176 ORTHO05D000106 3.3e-07 58.5 27 92.6
HanXRQChr00c0586g0576301 Helianthus annuus HOM05D000388 ORTHO05D009843 4.4e-07 58.2 83 50.6
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 2.2e-06 55.8 63 41.3
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 3.7e-06 55.1 93 40.9
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 4.8e-06 54.7 90 38.9
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 4.8e-06 54.7 90 38.9
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 6.3e-06 54.3 56 46.4


User provided reference genes

Program Settings