Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0272g0573011 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-24 115.9 63 100.0
HanXRQChr00c0300g0573261 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-24 115.9 63 100.0
HanXRQChr00c0313g0573411 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-24 115.9 63 100.0
HanXRQChr00c0920g0577881 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-24 115.9 63 100.0
HanXRQChr02g0041661 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-24 115.9 63 100.0
HanXRQChr02g0044811 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-24 115.9 63 100.0
HanXRQChr04g0099331 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-24 115.9 63 100.0
HanXRQChr07g0201081 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-24 115.9 63 100.0
HanXRQChr08g0210241 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-24 115.9 63 100.0
HanXRQChr10g0282461 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-24 115.9 63 100.0
HanXRQChr11g0326681 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-24 115.9 63 100.0
HanXRQCPg0579881 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-24 115.9 63 100.0
DCAR_032481 Daucus carota HOM05D007755 ORTHO05D009866 2.5e-24 114.8 63 98.4
HanXRQChr05g0151401 Helianthus annuus HOM05D007755 ORTHO05D009866 3.2e-24 114.4 63 98.4
Medtr8g056780 Medicago truncatula HOM05D007755 ORTHO05D009866 5.5e-24 113.6 63 96.8
LjContig00489g0017505 Lotus japonicus HOM05D007755 ORTHO05D009866 7.1e-24 113.2 63 96.8
PGR111G0111 Punica granatum HOM05D007755 ORTHO05D009866 9.3e-24 112.8 63 96.8
Migut.J01358 Erythranthe guttata HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
Potri.013G142548 Populus trichocarpa HOM05D007755 ORTHO05D009866 2.1e-23 111.7 63 95.2
CAN.G679.8 Capsicum annuum HOM05D007755 ORTHO05D009866 2.7e-23 111.3 63 96.8
Solyc01g102770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 2.7e-23 111.3 63 96.8
AL2G20820 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
AL2G21330 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
ATCG00300 Arabidopsis thaliana HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
A06p23320 Brassica napus HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
BNapus_Darmor_BZH_scaffold_287p00020 Brassica napus HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
C09p40450 Brassica napus HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
BolC7t41728H Brassica oleracea HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
BolC9t56908H Brassica oleracea HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
BolSC29t60454H Brassica oleracea HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
BolSC45t60871H Brassica oleracea HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
BolSC47t61109H Brassica oleracea HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
BolSC47t61113H Brassica oleracea HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
BraA06t25434Z Brassica rapa HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
BraSC140t45582Z Brassica rapa HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
CARHR281980 Cardamine hirsuta HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
LjContig00318g0015447 Lotus japonicus HOM05D007755 ORTHO05D009866 4.6e-23 110.5 63 95.2
Gohir.D06G164048 Gossypium hirsutum HOM05D007755 ORTHO05D009866 6.0e-23 110.2 63 93.7
Gohir.D08G128420 Gossypium hirsutum HOM05D007755 ORTHO05D009866 6.0e-23 110.2 63 93.7
Nn020s41507 Nelumbo nucifera HOM05D007755 ORTHO05D009866 6.0e-23 110.2 63 93.7
Nn082s42679 Nelumbo nucifera HOM05D007755 ORTHO05D009866 6.0e-23 110.2 63 93.7
Nn287s46147 Nelumbo nucifera HOM05D007755 ORTHO05D009866 6.0e-23 110.2 63 93.7
Nn3g19094 Nelumbo nucifera HOM05D007755 ORTHO05D009866 6.0e-23 110.2 63 93.7
Sed0002727 Sechium edule HOM05D007755 ORTHO05D009866 7.9e-23 109.8 63 93.7
Sed0008331 Sechium edule HOM05D007755 ORTHO05D009866 7.9e-23 109.8 63 93.7
Sed0012017 Sechium edule HOM05D007755 ORTHO05D009866 7.9e-23 109.8 63 93.7
Sed0014140 Sechium edule HOM05D007755 ORTHO05D009866 7.9e-23 109.8 63 93.7
Sed0021343 Sechium edule HOM05D007755 ORTHO05D009866 7.9e-23 109.8 63 93.7
Sed0024615 Sechium edule HOM05D007755 ORTHO05D009866 7.9e-23 109.8 63 93.7
HanXRQChr11g0330571 Helianthus annuus HOM05D007755 ORTHO05D009866 1.3e-22 109.0 63 95.2
Migut.D01347 Erythranthe guttata HOM05D007755 ORTHO05D009866 3.0e-22 107.8 59 98.3
Gohir.1Z049880 Gossypium hirsutum HOM05D007755 ORTHO05D009866 3.0e-22 107.8 63 90.5
Gohir.A05G086100 Gossypium hirsutum HOM05D007755 ORTHO05D009866 3.0e-22 107.8 63 92.1
PSO548G0042 Papaver somniferum HOM05D007755 ORTHO05D009866 3.9e-22 107.5 63 93.7
RcHm_v2.0_Chr3g0491831 Rosa chinensis HOM05D007755 ORTHO05D009866 3.9e-22 107.5 63 92.1
RcHm_v2.0_CPg0502301 Rosa chinensis HOM05D007755 ORTHO05D009866 3.9e-22 107.5 63 92.1
Gohir.A12G076900 Gossypium hirsutum HOM05D007755 ORTHO05D009866 6.7e-22 106.7 63 92.1
Solyc11g050770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 6.7e-22 106.7 62 91.9
Gohir.A12G121501 Gossypium hirsutum HOM05D007755 ORTHO05D009866 8.7e-22 106.3 63 90.5
Prupe.2G104500 Prunus persica HOM05D007755 ORTHO05D009866 1.1e-21 105.9 63 90.5
BraSC179t45795Z Brassica rapa HOM05D007755 ORTHO05D009866 1.5e-21 105.5 63 92.1
Glyma.01G095900 Glycine max HOM05D007755 ORTHO05D009866 4.3e-21 104.0 63 88.9
CAN.G201.1 Capsicum annuum HOM05D007755 ORTHO05D009866 1.3e-20 102.4 63 90.5
MD11G1068400 Malus domestica HOM05D007755 ORTHO05D009866 1.3e-20 102.4 63 87.3
Gohir.A01G164800 Gossypium hirsutum HOM05D007755 ORTHO05D009866 2.1e-20 101.7 63 87.3
Solyc10g017950.2 Solanum lycopersicum HOM05D007755 ORTHO05D009866 3.7e-20 100.9 62 90.3
Migut.M00584 Erythranthe guttata HOM05D007755 ORTHO05D009866 6.3e-20 100.1 56 94.6
Phvul.010G069000 Phaseolus vulgaris HOM05D007755 ORTHO05D009866 6.3e-20 100.1 63 82.5
BolSC44t60853H Brassica oleracea HOM05D007755 ORTHO05D009866 8.2e-20 99.8 59 89.8
BolSC49t61194H Brassica oleracea HOM05D007755 ORTHO05D009866 8.2e-20 99.8 59 89.8
Hma1.2p1_0149F.1_g066480 Hydrangea macrophylla HOM05D007755 ORTHO05D009866 3.1e-19 97.8 63 85.7
Gorai.003G070800 Gossypium raimondii HOM05D007755 ORTHO05D009866 5.3e-19 97.1 63 81.0
Thhalv10011069m.g Eutrema salsugineum HOM05D007755 ORTHO05D009866 1.2e-18 95.9 54 90.7
Glyma.08G363500 Glycine max HOM05D007755 ORTHO05D009866 2.6e-18 94.7 63 81.0
EL10As15g24140 Beta vulgaris HOM05D000890 ORTHO05D009866 5.9e-18 93.6 59 88.1
Eucgr.B02051 Eucalyptus grandis HOM05D007755 ORTHO05D009866 5.9e-18 93.6 63 81.0
Os12g0504050 Oryza sativa ssp. japonica HOM05D007755 ORTHO05D009866 5.0e-17 90.5 63 79.4
Nn2g13213 Nelumbo nucifera HOM05D007755 ORTHO05D009866 4.6e-15 84.0 45 93.3
BraSC143t45685Z Brassica rapa HOM05D007755 ORTHO05D009866 5.1e-14 80.5 47 89.4
Lsat_1_v5_gn_8_5961 Lactuca sativa HOM05D007755 ORTHO05D009866 6.7e-14 80.1 62 77.4
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 2.2e-12 75.1 43 90.7
SMO086G0034 Selaginella moellendorffii HOM05D007755 ORTHO05D009866 1.8e-11 72.0 61 68.9
CSS0044859 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 5.3e-11 70.5 45 80.0
AL2G25590 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 7.2e-08 60.1 52 67.3
MD00G1208700 Malus domestica HOM05D007755 ORTHO05D009866 6.1e-07 57.0 49 67.3
CSS0030059 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 2.3e-06 55.1 63 58.7


User provided reference genes

Program Settings