Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 7.8e-258 893.3 448 100.0
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 2.5e-248 861.7 501 89.0
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 2.5e-248 861.7 501 89.0
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 1.0e-241 839.7 488 89.3
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 3.5e-189 665.2 442 78.7
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 8.3e-183 644.0 506 69.0
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 6.8e-177 624.4 505 65.9
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 2.9e-167 592.4 511 64.2
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 2.0e-160 569.7 496 63.3
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 2.6e-160 569.3 506 60.7
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 5.4e-158 561.6 504 61.7
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 2.7e-157 559.3 507 62.3
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.7e-156 556.6 508 61.8
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.0e-156 555.8 479 64.9
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 6.2e-154 548.1 505 59.8
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.4e-152 542.0 500 61.6
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 7.5e-152 541.2 502 60.8
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.2e-150 535.8 510 60.6
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 9.2e-150 534.3 510 60.4
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 2.1e-149 533.1 506 57.9
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.6e-149 531.9 508 60.2
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-147 527.3 488 61.9
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 7.3e-147 524.6 509 57.6
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 2.6e-144 516.2 507 58.0
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.1e-142 508.1 508 58.5
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.1e-141 506.5 508 58.3
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 2.7e-141 506.1 493 57.0
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 4.6e-141 505.4 509 56.8
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 7.3e-139 498.0 505 56.4
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 2.8e-138 496.1 468 59.0
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 3.6e-138 495.7 476 58.4
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.1e-137 494.2 419 64.2
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 1.7e-132 476.9 510 53.9
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 1.7e-132 476.9 510 53.9
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 2.5e-131 473.0 283 85.9
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 4.3e-131 472.2 510 53.3
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 1.3e-130 470.7 510 53.7
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.1e-130 468.0 496 55.4
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.1e-130 468.0 496 55.4
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.1e-130 468.0 496 55.4
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.1e-130 468.0 496 55.4
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.1e-130 468.0 496 55.4
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.0e-128 463.4 488 58.8
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 2.2e-127 459.9 505 53.7
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 6.4e-127 458.4 510 52.0
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.4e-126 457.2 455 58.2
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 9.3e-126 454.5 443 58.2
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.0e-124 449.5 426 59.9
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 1.1e-123 447.6 493 53.8
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 2.5e-123 446.4 440 57.0
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 8.1e-122 441.4 509 51.7
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 1.4e-121 440.7 329 73.3
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.5e-118 428.7 407 59.7
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.8e-113 413.7 472 52.1
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 7.6e-112 408.3 509 50.1
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 1.6e-106 390.6 338 62.1
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 8.5e-103 378.3 422 52.1
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 5.1e-100 369.0 464 50.9
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 4.3e-99 365.9 394 54.1
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 5.1e-92 342.4 391 51.4
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.8e-92 341.7 453 49.7
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.8e-87 326.2 459 45.1
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 1.6e-85 320.9 301 61.5
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 1.3e-82 311.2 449 45.2
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 1.9e-78 297.4 350 53.1
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 1.0e-76 291.6 231 64.5
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.6e-69 266.5 294 53.1
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 6.3e-66 255.8 217 66.4
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 6.3e-66 255.8 269 57.2
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 4.5e-64 249.6 129 100.0
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 5.9e-64 249.2 298 48.3
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.1e-61 240.7 270 57.0
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 5.7e-59 232.6 242 55.4
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 1.7e-58 231.1 145 82.1
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 1.1e-57 228.4 211 55.9
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 1.1e-57 228.4 211 55.9
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 1.1e-57 228.4 211 55.9
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 1.1e-57 228.4 211 55.9
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 1.1e-57 228.4 211 55.9
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 8.0e-53 212.2 418 39.0
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 2.3e-52 210.7 252 48.0
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 2.3e-52 210.7 252 48.0
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 1.5e-51 208.0 192 58.3
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 5.8e-51 206.1 168 63.1
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 6.4e-50 202.6 245 49.4
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 2.7e-48 197.2 162 68.5
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 9.5e-46 188.7 184 57.6
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 2.8e-45 187.2 157 61.8
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 9.8e-43 178.7 127 71.7
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 9.2e-41 172.2 157 57.3
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 1.6e-40 171.4 220 49.1
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 4.6e-40 169.9 119 74.8
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.0e-39 168.7 117 72.6
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 6.6e-39 166.0 288 36.5
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 2.8e-37 160.6 143 58.0
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 1.4e-36 158.3 134 59.7
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 6.8e-36 156.0 86 90.7
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.8e-36 156.0 148 57.4
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 2.9e-34 150.6 82 87.8
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.9e-33 147.9 130 64.6
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 3.2e-33 147.1 122 60.7
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 2.7e-32 144.1 115 69.6
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 6.0e-32 142.9 130 63.1
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 7.8e-32 142.5 129 63.6
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 3.9e-31 140.2 127 61.4
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.1e-30 138.7 339 32.4
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 7.3e-30 136.0 102 61.8
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 4.4e-27 126.7 116 52.6
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 7.6e-27 125.9 139 55.4
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 1.3e-26 125.2 124 54.0
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 4.9e-26 123.2 105 61.0
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 6.4e-26 122.9 98 66.3
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.2e-25 120.6 122 59.8
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.6e-24 118.2 192 40.1
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 2.7e-24 117.5 159 45.9
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 3.5e-24 117.1 76 69.7
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 7.8e-24 115.9 76 69.7
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.3e-23 115.2 119 54.6
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.3e-23 114.4 82 64.6
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 6.6e-23 112.8 91 61.5
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.6e-21 108.2 79 72.2
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 8.1e-21 105.9 83 62.7
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 2.4e-20 104.4 75 62.7
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.1e-20 104.0 77 70.1
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 9.0e-20 102.4 89 51.7
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 3.4e-19 100.5 115 47.8
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.4e-17 95.1 90 54.4
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-17 95.1 156 41.0
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.5e-16 90.5 62 72.6
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 1.9e-14 84.7 76 56.6
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.4e-12 78.6 53 64.2
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 9.0e-12 75.9 66 56.1
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 2.0e-11 74.7 65 67.7
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 9.9e-11 72.4 107 43.0
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 1.7e-10 71.6 62 58.1
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 1.1e-09 68.9 41 73.2
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 1.4e-09 68.6 54 68.5
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.9e-09 68.2 43 74.4
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.9e-09 68.2 43 74.4
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 2.4e-09 67.8 62 51.6
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 4.2e-09 67.0 83 51.8
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 1.6e-08 65.1 45 64.4
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 1.8e-07 61.6 46 71.7
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.3e-06 57.4 32 87.5
Mapoly1406s0001 Marchantia polymorpha HOM05D004473 ORTHO05D005652 4.3e-06 57.0 74 36.5
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 5.6e-06 56.6 48 54.2


User provided reference genes

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