Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.1e-310 1068.1 532 100.0
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 5.4e-266 920.6 530 85.1
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 5.9e-236 820.8 525 77.1
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 2.9e-211 738.8 533 69.0
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 5.0e-211 738.0 538 68.4
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 1.1e-202 710.3 530 67.2
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 1.1e-202 710.3 542 64.9
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 9.4e-202 707.2 532 66.5
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 9.4e-202 707.2 529 66.5
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 1.4e-200 703.4 533 67.0
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 5.2e-200 701.4 530 66.2
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 2.6e-199 699.1 531 65.0
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 2.8e-198 695.7 532 64.7
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 6.3e-198 694.5 544 64.7
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 8.3e-198 694.1 532 64.1
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 7.0e-197 691.0 533 63.6
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.6e-196 689.9 524 66.2
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 1.6e-196 689.9 529 66.4
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 2.7e-196 689.1 524 65.3
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 4.5e-196 688.3 534 64.6
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 4.5e-196 688.3 531 64.4
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 5.9e-196 688.0 538 63.8
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 7.7e-196 687.6 534 64.6
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 3.8e-195 685.3 528 65.5
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 3.8e-195 685.3 530 65.1
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 3.8e-195 685.3 540 63.9
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 8.6e-195 684.1 520 66.0
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 1.1e-194 683.7 520 65.2
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 7.2e-194 681.0 532 62.6
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 7.2e-194 681.0 537 64.1
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 7.2e-194 681.0 553 63.7
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 2.1e-193 679.5 532 64.5
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 2.1e-193 679.5 529 65.2
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 2.8e-193 679.1 527 64.3
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 3.6e-193 678.7 529 63.9
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 4.7e-193 678.3 554 62.3
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 6.1e-193 677.9 540 64.1
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 8.0e-193 677.6 527 64.1
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 2.0e-191 672.9 528 63.3
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 4.4e-191 671.8 530 63.4
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 7.5e-191 671.0 553 62.4
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 6.3e-190 667.9 519 63.6
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 4.1e-189 665.2 530 63.0
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 2.3e-187 659.4 537 62.2
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 5.0e-187 658.3 540 62.4
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 1.1e-186 657.1 546 60.6
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 5.6e-186 654.8 529 62.0
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 1.0e-184 650.6 544 60.5
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 6.8e-184 647.9 525 61.3
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 3.4e-183 645.6 528 61.4
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 4.4e-183 645.2 528 61.7
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 1.3e-182 643.7 581 57.1
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 8.3e-182 641.0 533 60.2
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 2.4e-181 639.4 521 61.0
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 5.4e-181 638.3 574 57.0
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 1.6e-180 636.7 523 61.4
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 3.5e-180 635.6 521 61.0
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 6.0e-180 634.8 521 61.0
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 3.0e-179 632.5 530 60.2
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 3.3e-178 629.0 528 59.8
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 5.6e-178 628.2 530 59.8
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 7.3e-178 627.9 521 60.3
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 8.9e-176 620.9 537 59.4
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 8.9e-176 620.9 532 59.0
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 1.2e-175 620.5 534 59.0
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 2.0e-175 619.8 521 59.9
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 1.1e-173 614.0 453 65.6
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 6.0e-172 608.2 521 59.1
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 3.9e-171 605.5 540 56.5
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 7.3e-170 601.3 528 59.7
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 7.3e-170 601.3 562 57.1
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 1.6e-169 600.1 535 56.8
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 1.5e-167 593.6 528 57.8
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 5.8e-167 591.7 544 55.7
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 9.2e-165 584.3 584 52.9
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 9.2e-165 584.3 497 59.0
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 4.6e-164 582.0 559 54.7
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 3.9e-163 578.9 501 58.1
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.5e-162 576.2 530 56.6
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 1.4e-157 560.5 530 55.3
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 3.2e-157 559.3 435 64.1
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 2.7e-156 556.2 522 55.4
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 4.6e-156 555.4 522 55.0
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.9e-154 550.1 435 63.0
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 3.3e-154 549.3 522 55.0
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 4.0e-152 542.3 521 54.1
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 1.3e-145 520.8 522 53.1
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 4.0e-144 515.8 524 51.3
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 4.0e-144 515.8 401 64.3
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 4.9e-142 508.8 412 61.7
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 3.0e-139 499.6 524 50.6
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.5e-138 497.3 415 60.7
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.2e-133 479.2 543 47.3
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 6.0e-132 475.3 575 48.0
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.8e-128 463.8 545 45.5
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 6.9e-128 461.8 525 46.9
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 9.4e-109 398.3 497 44.7
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 2.1e-108 397.1 345 57.7
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 7.9e-108 395.2 345 57.4
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 6.1e-100 369.0 545 40.4
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.1e-98 364.8 286 65.4
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.1e-96 358.2 469 43.3
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.0e-94 351.7 287 63.4
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 7.5e-90 335.5 545 39.3
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 2.2e-81 307.4 287 57.5
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 2.5e-77 293.9 386 43.5
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.3e-73 281.6 571 33.8
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.5e-69 268.1 203 67.5
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 2.5e-69 267.3 551 33.0
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.6e-62 242.7 212 58.0
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 5.2e-59 233.0 546 30.0
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 1.7e-54 218.0 183 60.7
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.8e-51 208.0 153 65.4
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.7e-46 191.4 130 72.3
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 1.7e-46 191.4 168 56.0
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 6.6e-46 189.5 135 71.9
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 8.7e-38 162.5 135 58.5
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 1.1e-32 145.6 123 54.5
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.4e-32 144.4 113 65.5
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 8.1e-28 129.4 94 67.0
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.1e-27 129.0 445 27.2
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.3e-25 122.1 100 61.0
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 1.4e-24 118.6 85 72.9
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 1.3e-20 105.5 152 40.1
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 6.0e-15 86.7 62 66.1
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 1.8e-14 85.1 88 52.3
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 8.7e-14 82.8 71 59.2
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 1.3e-12 79.0 87 49.4
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 1.3e-12 79.0 87 49.4
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 8.2e-12 76.3 73 49.3
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 9.0e-11 72.8 273 27.8
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 2.5e-08 64.7 114 37.7
SMO009G0022 Selaginella moellendorffii HOM05D016773 ORTHO05D019668 3.2e-08 64.3 343 25.4
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 7.2e-08 63.2 68 54.4
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 1.2e-07 62.4 117 35.0
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 1.3e-06 58.9 102 40.2
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 2.3e-06 58.2 75 41.3
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 3.0e-06 57.8 91 38.5
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 5.1e-06 57.0 75 38.7
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 8.7e-06 56.2 185 31.4
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 8.7e-06 56.2 75 41.3
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 8.7e-06 56.2 75 38.7
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 8.7e-06 56.2 75 38.7
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 8.7e-06 56.2 75 38.7


User provided reference genes

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