Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 1.1e-74 283.1 136 100.0
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 4.0e-72 274.6 135 96.3
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 2.0e-71 272.3 136 94.9
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 3.7e-70 268.1 136 92.6
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 1.1e-69 266.5 136 91.2
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 1.4e-69 266.2 136 91.2
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.4e-69 266.2 136 91.2
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 2.4e-69 265.4 136 90.4
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 5.4e-69 264.2 132 96.2
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 5.4e-69 264.2 135 91.1
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 9.2e-69 263.5 136 89.7
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.2e-68 263.1 136 89.0
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 1.6e-68 262.7 136 89.7
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.6e-68 262.7 136 88.2
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 2.1e-68 262.3 135 91.1
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 3.5e-68 261.5 136 89.7
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 4.6e-68 261.2 136 89.7
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 4.6e-68 261.2 136 88.2
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 4.6e-68 261.2 135 90.4
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 4.6e-68 261.2 136 88.2
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 6.0e-68 260.8 136 88.2
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 6.0e-68 260.8 136 88.2
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 7.8e-68 260.4 135 89.6
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 90.4
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 90.4
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 1.0e-67 260.0 136 88.2
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.0e-67 260.0 135 88.1
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.0e-67 260.0 136 88.2
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 1.3e-67 259.6 136 86.8
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.0e-67 258.5 136 86.8
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.0e-67 258.5 136 86.8
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.0e-67 258.5 136 86.8
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 3.0e-67 258.5 135 88.1
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 5.1e-67 257.7 136 87.5
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 6.6e-67 257.3 136 88.2
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 6.6e-67 257.3 136 88.2
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 6.6e-67 257.3 136 88.2
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 6.6e-67 257.3 136 88.2
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 6.6e-67 257.3 136 87.5
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 6.6e-67 257.3 135 89.6
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 85.3
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 86.0
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 1.1e-66 256.5 136 86.8
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 1.5e-66 256.1 136 86.0
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.5e-66 256.1 136 85.3
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.5e-66 256.1 133 89.5
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 1.5e-66 256.1 136 86.0
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 1.9e-66 255.8 136 86.8
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 1.9e-66 255.8 136 87.5
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 86.8
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 9.5e-66 253.4 136 85.3
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 86.0
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 86.0
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 2.1e-65 252.3 135 86.7
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 2.1e-65 252.3 136 86.0
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 4.7e-65 251.1 136 83.8
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 83.8
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 1.1e-64 250.0 136 84.6
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 1.1e-64 250.0 134 85.8
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 82.4
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 82.4
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 82.4
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 82.4
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 83.8
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 4.0e-64 248.1 136 81.6
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 81.6
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 81.6
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 82.4
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 80.9
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 81.6
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 81.6
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 7.6e-63 243.8 136 83.8
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 7.6e-63 243.8 136 83.8
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 1.7e-62 242.7 136 82.4
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 1.7e-62 242.7 136 82.4
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 1.7e-62 242.7 136 82.4
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 1.7e-62 242.7 136 83.8
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 1.7e-62 242.7 138 82.6
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 2.2e-62 242.3 136 83.8
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 2.2e-62 242.3 136 82.4
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 6.4e-62 240.7 136 80.9
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 1.1e-61 240.0 136 81.6
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 1.4e-61 239.6 136 81.6
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 1.4e-61 239.6 136 80.9
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 1.9e-61 239.2 136 80.9
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 1.9e-61 239.2 136 80.9
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 4.1e-61 238.0 131 86.3
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 5.4e-61 237.7 124 87.1
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 7.1e-61 237.3 136 81.6
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 7.1e-61 237.3 124 90.3
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 7.1e-61 237.3 124 91.1
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.5e-60 235.0 124 87.1
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 1.7e-59 232.6 129 82.2
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 2.3e-59 232.3 130 84.6
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 1.5e-58 229.6 124 83.1
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 2.5e-58 228.8 119 89.9
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.2e-57 226.5 124 85.5
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 6.2e-57 224.2 124 87.1
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 6.2e-57 224.2 133 78.2
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 1.1e-56 223.4 133 77.4
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 1.8e-56 222.6 134 79.1
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 2.4e-56 222.2 133 76.7
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 5.2e-56 221.1 132 75.8
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 2.6e-55 218.8 133 75.9
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 2.6e-55 218.8 134 77.6
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 4.2e-53 211.5 206 54.4
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 7.1e-53 210.7 135 71.9
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 2.7e-52 208.8 136 72.1
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 5.1e-51 204.5 132 71.2
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 9.6e-50 200.3 120 76.7
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 4.8e-49 198.0 136 68.4
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 3.1e-48 195.3 120 75.0
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 9.0e-48 193.7 134 67.2
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 7.6e-47 190.7 153 62.1
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 3.3e-42 175.3 128 62.5
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.7e-41 171.8 92 85.9
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 5.3e-40 167.9 125 68.0
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 7.1e-37 157.5 76 90.8
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 7.1e-37 157.5 75 93.3
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 2.1e-36 156.0 92 76.1
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 1.0e-35 153.7 91 79.1
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 2.3e-35 152.5 75 89.3
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 8.7e-35 150.6 74 87.8
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 8.7e-35 150.6 74 87.8
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 1.1e-34 150.2 74 90.5
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 2.8e-33 145.6 74 82.4
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 2.8e-33 145.6 74 82.4
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.0e-31 139.4 73 83.6
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 1.3e-27 126.7 76 76.3
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 1.9e-26 122.9 140 51.4
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 2.8e-25 119.0 132 43.9
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 3.1e-24 115.5 72 80.6
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 1.3e-17 93.6 117 46.2
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 1.1e-16 90.5 47 83.0
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 1.8e-16 89.7 165 41.2
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 6.9e-16 87.8 67 67.2
Cre03.g159300 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 5.0e-14 81.6 126 38.1
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 3.9e-11 72.0 70 58.6
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 1.3e-09 67.0 141 33.3
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 2.8e-09 65.9 35 77.1
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 8.2e-09 64.3 68 50.0


User provided reference genes

Program Settings