Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 0.0e+00 1110.1 591 100.0
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 4.1e-230 801.6 546 76.2
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 6.1e-226 787.7 592 73.5
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 1.4e-209 733.4 565 71.5
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 2.4e-206 722.6 613 66.7
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 1.6e-202 709.9 623 65.3
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 2.5e-195 686.0 584 69.3
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 7.3e-195 684.5 548 68.6
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 3.6e-194 682.2 540 73.1
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.8e-193 679.9 573 66.0
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 8.9e-193 677.6 538 68.6
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 1.7e-191 673.3 562 64.4
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 2.9e-191 672.5 577 63.6
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 1.1e-190 670.6 512 68.9
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 1.4e-190 670.2 575 70.1
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 1.4e-190 670.2 416 82.7
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 1.9e-190 669.8 568 63.6
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 3.2e-190 669.1 416 81.0
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 5.4e-190 668.3 550 67.1
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 5.4e-190 668.3 606 61.1
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 2.7e-189 666.0 525 68.0
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 7.8e-189 664.5 582 63.2
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.3e-188 663.7 416 80.5
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.3e-188 662.9 607 60.6
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 3.0e-188 662.5 606 59.7
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 5.1e-188 661.8 416 81.5
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 8.6e-188 661.0 415 80.7
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.1e-187 660.6 599 61.1
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.9e-187 659.8 415 81.4
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 5.6e-187 658.3 591 62.8
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 1.6e-186 656.8 483 71.2
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 1.6e-186 656.8 589 62.0
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 2.1e-186 656.4 499 69.1
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 2.1e-186 656.4 592 62.7
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 3.6e-186 655.6 607 60.6
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 6.2e-186 654.8 604 61.1
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.4e-185 653.7 538 65.8
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 2.3e-185 652.9 415 79.5
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 6.8e-185 651.4 574 62.7
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 6.8e-185 651.4 412 79.9
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 8.9e-185 651.0 614 61.1
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.2e-184 650.6 558 64.7
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 9.9e-184 647.5 512 68.0
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.7e-183 646.7 612 59.2
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 2.9e-183 646.0 606 60.1
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.7e-183 645.6 581 61.4
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 3.7e-183 645.6 568 62.7
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 1.1e-182 644.0 597 66.2
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 1.4e-182 643.7 565 61.2
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 1.4e-182 643.7 553 64.9
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 1.9e-182 643.3 571 61.3
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.1e-182 642.1 582 64.6
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 5.4e-182 641.7 523 67.3
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 5.4e-182 641.7 583 64.5
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 7.1e-182 641.3 502 70.7
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 7.1e-182 641.3 543 65.7
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 9.2e-182 641.0 417 79.1
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 1.6e-181 640.2 571 62.3
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.6e-181 640.2 562 62.3
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 2.1e-181 639.8 550 67.6
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.1e-181 639.8 631 57.8
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.5e-181 639.0 400 78.8
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 3.5e-181 639.0 409 79.2
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 3.5e-181 639.0 416 78.6
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 6.0e-181 638.3 559 63.7
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 1.0e-180 637.5 587 60.8
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 3.9e-180 635.6 415 78.6
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 5.1e-180 635.2 416 76.4
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 8.6e-180 634.4 413 77.7
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 1.1e-179 634.0 413 77.7
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 1.1e-179 634.0 561 62.4
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.1e-179 634.0 562 61.7
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 1.9e-179 633.3 409 78.5
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.5e-179 632.9 574 61.0
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 5.6e-179 631.7 560 62.3
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 1.2e-178 630.6 410 77.8
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 1.6e-178 630.2 560 62.3
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 1.6e-178 630.2 411 77.1
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 4.7e-178 628.6 410 78.8
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 4.7e-178 628.6 413 77.0
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.7e-178 628.6 413 77.0
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 8.1e-178 627.9 552 63.0
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 8.1e-178 627.9 411 77.9
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.1e-177 627.5 549 64.1
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.1e-177 627.5 410 78.0
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 1.4e-177 627.1 509 65.0
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 2.4e-177 626.3 567 61.9
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 5.2e-177 625.2 552 63.0
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 6.8e-177 624.8 555 64.3
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 6.8e-177 624.8 530 63.2
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 6.8e-177 624.8 599 58.8
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 8.9e-177 624.4 554 67.3
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 1.2e-176 624.0 408 77.5
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 1.5e-176 623.6 478 70.1
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 2.0e-176 623.2 494 67.2
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.6e-176 622.9 410 74.6
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 4.4e-176 622.1 403 76.9
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 5.8e-176 621.7 579 60.3
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 9.9e-176 620.9 598 58.9
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 9.9e-176 620.9 507 64.5
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 1.3e-175 620.5 406 76.8
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 1.3e-175 620.5 406 76.8
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.7e-175 620.2 585 61.5
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 2.2e-175 619.8 405 76.5
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 2.9e-175 619.4 492 73.4
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 2.9e-175 619.4 406 76.6
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 2.9e-175 619.4 406 76.6
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 2.9e-175 619.4 406 76.6
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 2.9e-175 619.4 499 66.3
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 2.9e-175 619.4 410 76.1
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 3.8e-175 619.0 410 76.6
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 4.9e-175 618.6 403 76.4
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 4.9e-175 618.6 499 66.3
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 6.4e-175 618.2 538 63.4
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 6.4e-175 618.2 416 76.9
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 6.4e-175 618.2 409 76.0
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.1e-174 617.5 411 75.9
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 2.4e-174 616.3 413 75.1
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.1e-173 613.2 403 75.2
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 2.1e-173 613.2 411 74.5
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 3.5e-173 612.5 409 75.6
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 3.5e-173 612.5 401 76.8
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 6.0e-173 611.7 402 75.6
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 6.0e-173 611.7 408 76.2
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 2.3e-172 609.8 427 71.9
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.9e-171 606.7 408 75.2
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 7.3e-171 604.7 408 75.5
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 3.6e-170 602.4 541 60.8
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.4e-169 600.5 348 83.9
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 1.8e-169 600.1 553 59.3
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 3.4e-168 595.9 355 81.7
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 9.9e-168 594.3 540 61.1
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 5.6e-163 578.6 379 73.9
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 8.4e-159 564.7 464 65.3
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.4e-158 563.9 362 77.6
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.2e-151 540.0 600 53.7
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 2.2e-143 513.5 382 67.0
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 6.1e-141 505.4 383 66.3
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 6.7e-140 501.9 390 65.9
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 5.3e-137 492.3 346 69.9
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 1.3e-130 471.1 372 63.7
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.1e-126 458.0 375 65.6
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 5.1e-124 449.1 314 69.7
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 7.0e-97 359.0 414 48.3
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 7.7e-96 355.5 209 80.4
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 3.7e-90 336.7 197 80.7
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.1e-89 335.1 342 58.5
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 3.5e-80 303.5 180 80.0
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 8.3e-74 282.3 193 72.5
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.3e-71 274.2 155 80.6
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.3e-71 274.2 155 80.6
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 3.9e-71 273.5 158 78.5
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.4e-65 255.0 364 42.6
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 1.4e-60 238.4 357 36.1
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 7.3e-54 216.1 136 80.1
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 2.4e-52 211.1 302 38.7
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 5.4e-49 199.9 284 39.4
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.3e-47 194.5 127 78.7
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 1.5e-38 165.2 109 74.3
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 9.0e-36 156.0 183 51.4
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 5.8e-35 153.3 110 65.5
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 2.7e-32 144.4 213 36.2
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 9.6e-30 136.0 150 53.3
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.1e-28 131.0 88 70.5
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 6.9e-28 129.8 83 73.5
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 1.3e-26 125.6 83 71.1
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 9.3e-25 119.4 124 54.8
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 1.1e-20 105.9 113 50.4
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 3.1e-20 104.4 95 61.1
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 7.9e-16 89.7 92 55.4
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 3.0e-15 87.8 232 33.2
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 2.2e-13 81.6 175 33.7
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 8.2e-13 79.7 162 37.0
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 4.1e-12 77.4 45 82.2
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 1.1e-06 59.3 39 74.4
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 1.5e-06 58.9 35 77.1
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 3.3e-06 57.8 111 36.9


User provided reference genes

Program Settings