Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0325641 Helianthus annuus HOM05D000434 ORTHO05D223348 3.4e-100 368.2 175 100.0
HanXRQChr16g0512161 Helianthus annuus HOM05D000434 ORTHO05D004273 3.9e-19 99.0 56 83.9
ECA232G4531 Erigeron canadensis HOM05D000434 ORTHO05D004273 1.4e-16 90.5 56 75.0
Nitab4.5_0005545g0040 Nicotiana tabacum HOM05D000434 ORTHO05D004273 1.0e-11 74.3 47 70.2
Peaxi162Scf00516g00432 Petunia axillaris HOM05D000434 ORTHO05D004273 1.5e-10 70.5 47 66.0
Cc02_g00030 Coffea canephora HOM05D000434 ORTHO05D004273 2.5e-10 69.7 52 63.5
CAN.G732.30 Capsicum annuum HOM05D000434 ORTHO05D004273 3.3e-10 69.3 47 68.1
Lsat_1_v5_gn_9_47961 Lactuca sativa HOM05D000434 ORTHO05D004273 7.3e-10 68.2 44 70.5
Nitab4.5_0000021g0920 Nicotiana tabacum HOM05D000434 ORTHO05D004273 7.3e-10 68.2 47 66.0
Migut.H00002 Erythranthe guttata HOM05D000434 ORTHO05D004273 1.2e-09 67.4 36 80.6
Manes.08G158900 Manihot esculenta HOM05D000434 ORTHO05D004273 1.6e-09 67.0 46 65.2
Potri.013G075300 Populus trichocarpa HOM05D000434 ORTHO05D004273 2.1e-09 66.6 38 71.1
Sabra13G0064800 Salix brachista HOM05D000434 ORTHO05D004273 2.1e-09 66.6 38 71.1
GSVIVG01024260001 Vitis vinifera HOM05D000434 ORTHO05D004273 2.1e-09 66.6 35 82.9
Nn1g09320 Nelumbo nucifera HOM05D000434 ORTHO05D004273 2.8e-09 66.2 46 63.0
Ciclev10030644m.g Citrus clementina HOM05D000434 ORTHO05D004273 3.6e-09 65.9 51 56.9
Dinv17235 Davidia involucrata HOM05D000434 ORTHO05D004273 3.6e-09 65.9 46 65.2
Lj3C883G2 Lonicera japonica HOM05D000434 ORTHO05D004273 4.7e-09 65.5 49 55.1
Manes.09G131000 Manihot esculenta HOM05D000434 ORTHO05D004273 4.7e-09 65.5 46 60.9
Prupe.2G329600 Prunus persica HOM05D000434 ORTHO05D004273 4.7e-09 65.5 39 71.8
SalBow1G4855 Salvia bowleyana HOM05D000434 ORTHO05D004273 4.7e-09 65.5 36 77.8
DCAR_020436 Daucus carota HOM05D000434 ORTHO05D004273 6.2e-09 65.1 42 69.0
SGA_v2.0_scaffold18G08208 Striga asiatica HOM05D000434 ORTHO05D004273 8.1e-09 64.7 40 67.5
CSS0041140 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D004273 1.1e-08 64.3 46 63.0
Haze_00345 Corylus avellana HOM05D000434 ORTHO05D004273 1.1e-08 64.3 52 59.6
Nn3g19154 Nelumbo nucifera HOM05D000434 ORTHO05D004273 1.1e-08 64.3 46 60.9
PGSC0003DMG400026492 Solanum tuberosum HOM05D000434 ORTHO05D004273 1.1e-08 64.3 45 62.2
Potri.019G043400 Populus trichocarpa HOM05D000434 ORTHO05D004273 1.4e-08 63.9 49 57.1
Solyc03g097350.4 Solanum lycopersicum HOM05D000434 ORTHO05D004273 1.4e-08 63.9 45 62.2
Sopen03g028110 Solanum pennellii HOM05D000434 ORTHO05D004273 1.4e-08 63.9 45 62.2
COL.COLO4_08409 Corchorus olitorius HOM05D000434 ORTHO05D004273 1.8e-08 63.5 45 66.7
FvH4_7g34270 Fragaria vesca HOM05D000434 ORTHO05D004273 1.8e-08 63.5 39 69.2
Glyma.16G101500 Glycine max HOM05D000434 ORTHO05D004273 3.1e-08 62.8 39 69.2
TAR629G3430 Trochodendron aralioides HOM05D000434 ORTHO05D004273 3.1e-08 62.8 36 75.0
MD07G1311600 Malus domestica HOM05D000434 ORTHO05D004273 4.0e-08 62.4 39 66.7
Atru.chr12.1812 Acer truncatum HOM05D000434 ORTHO05D004273 6.8e-08 61.6 57 52.6
Atru.chr13.64 Acer truncatum HOM05D000434 ORTHO05D004273 6.8e-08 61.6 38 68.4
Cfa016111 Carpinus fangiana HOM05D004970 ORTHO05D005665 6.8e-08 61.6 46 60.9
FAN03G1317 Fragaria x ananassa HOM05D000434 ORTHO05D004273 6.8e-08 61.6 39 66.7
FAN10G0514 Fragaria x ananassa HOM05D000434 ORTHO05D004273 6.8e-08 61.6 39 66.7
Cpa.g.c34510 Carica papaya HOM05D000434 ORTHO05D004273 8.9e-08 61.2 50 54.0
Duzib177G0206 Durio zibethinus HOM05D000434 ORTHO05D004273 8.9e-08 61.2 45 62.2
RcHm_v2.0_Chr1g0384621 Rosa chinensis HOM05D000434 ORTHO05D004273 8.9e-08 61.2 39 69.2
Thecc.05G227400 Theobroma cacao HOM05D000434 ORTHO05D004273 8.9e-08 61.2 45 62.2
TAR636G0662 Trochodendron aralioides HOM05D000434 ORTHO05D004273 8.9e-08 61.2 46 56.5
Hma1.2p1_0419F.1_g149600 Hydrangea macrophylla HOM05D000434 ORTHO05D004273 1.2e-07 60.8 46 58.7
TWI34G0496 Tripterygium wilfordii HOM05D000434 ORTHO05D004273 1.2e-07 60.8 34 76.5
HPP92_014380 Vanilla planifolia HOM05D000434 ORTHO05D004273 1.2e-07 60.8 45 60.0
HPP92_027561 Vanilla planifolia HOM05D000434 ORTHO05D004273 1.2e-07 60.8 45 60.0
VMungo0251G3292 Vigna mungo HOM05D000434 ORTHO05D004273 1.2e-07 60.8 51 60.8
CANSAT21G2065 Cannabis sativa HOM05D000434 ORTHO05D004273 1.5e-07 60.5 39 66.7
Dinv07434 Davidia involucrata HOM05D000434 ORTHO05D004273 1.5e-07 60.5 47 63.8
Lalb_Chr05g0228931 Lupinus albus HOM05D000434 ORTHO05D004273 1.5e-07 60.5 44 59.1
Phvul.003G275500 Phaseolus vulgaris HOM05D000434 ORTHO05D004273 1.5e-07 60.5 52 59.6
MD01G1239700 Malus domestica HOM05D000434 ORTHO05D004273 2.0e-07 60.1 39 66.7
vmacro06357 Vaccinium macrocarpon HOM05D000434 ORTHO05D004273 2.0e-07 60.1 45 60.0
CiPaw.05G210600 Carya illinoinensis HOM05D000434 ORTHO05D004273 2.6e-07 59.7 46 58.7
Glyma.08G266300 Glycine max HOM05D000434 ORTHO05D004273 3.4e-07 59.3 39 64.1
ATR0568G029 Amborella trichopoda HOM05D000434 ORTHO05D004273 4.4e-07 58.9 46 56.5
CiPaw.06G037700 Carya illinoinensis HOM05D000434 ORTHO05D004273 7.6e-07 58.2 45 60.0
AUR62002097 Chenopodium quinoa HOM05D000434 ORTHO05D004273 7.6e-07 58.2 45 57.8
Ca_26089_v3 Cicer arietinum L. HOM05D000434 ORTHO05D004273 7.6e-07 58.2 39 61.5
Aqoxy6G02174 Aquilegia oxysepala HOM05D000434 ORTHO05D004273 9.9e-07 57.8 31 77.4
Lj4g0020871 Lotus japonicus HOM05D000434 ORTHO05D004273 9.9e-07 57.8 42 61.9
Psat4g111280 Pisum sativum HOM05D000434 ORTHO05D004273 1.3e-06 57.4 39 61.5
SEGI_11197 Sequoiadendron giganteum HOM05D000434 ORTHO05D004273 1.3e-06 57.4 48 58.3
EL10Ac3g05039 Beta vulgaris HOM05D000434 ORTHO05D004273 1.7e-06 57.0 45 55.6
unitig_748.g6994 Utricularia gibba HOM05D000434 ORTHO05D004273 1.7e-06 57.0 61 44.3
CARHR216670 Cardamine hirsuta HOM05D000434 ORTHO05D004273 2.2e-06 56.6 36 58.3
Gohir.A13G158300 Gossypium hirsutum HOM05D000434 ORTHO05D004273 2.9e-06 56.2 40 65.0
Gohir.D13G163000 Gossypium hirsutum HOM05D000434 ORTHO05D004273 2.9e-06 56.2 40 65.0
Sc13g0011040 Simmondsia chinensis HOM05D000434 ORTHO05D004273 2.9e-06 56.2 42 59.5
AUR62028215 Chenopodium quinoa HOM05D000434 ORTHO05D004273 3.8e-06 55.8 45 55.6
Duzib128G0661 Durio zibethinus HOM05D000434 ORTHO05D004273 4.9e-06 55.5 40 62.5
Gohir.A11G221500 Gossypium hirsutum HOM05D001644 ORTHO05D004273 4.9e-06 55.5 40 60.0
Gohir.D11G234900 Gossypium hirsutum HOM05D000434 ORTHO05D004273 4.9e-06 55.5 40 60.0
Gorai.007G247600 Gossypium raimondii HOM05D000434 ORTHO05D004273 4.9e-06 55.5 40 60.0
Gorai.013G185200 Gossypium raimondii HOM05D000434 ORTHO05D004273 4.9e-06 55.5 38 65.8
TPR.G6121 Trifolium pratense HOM05D000434 ORTHO05D004273 4.9e-06 55.5 39 59.0
TWI60G1125 Tripterygium wilfordii HOM05D000434 ORTHO05D004273 4.9e-06 55.5 34 67.6
Actinidia33805 Actinidia chinensis HOM05D000434 ORTHO05D004273 6.4e-06 55.1 46 54.3
PGR142G0113 Punica granatum HOM05D000434 ORTHO05D004273 6.4e-06 55.1 33 72.7
Medtr8g070930 Medicago truncatula HOM05D000434 ORTHO05D004273 8.4e-06 54.7 48 54.2


User provided reference genes

Program Settings