Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 4.1e-102 374.8 194 100.0
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 7.5e-56 221.1 220 60.0
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 3.0e-49 199.1 177 65.0
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.0e-41 174.1 125 76.0
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 3.7e-31 139.0 199 49.7
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 7.3e-27 124.8 184 45.1
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 1.4e-25 120.6 180 48.3
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 1.4e-25 120.6 183 49.2
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.4e-25 120.6 183 49.2
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 2.3e-25 119.8 192 46.4
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 6.8e-25 118.2 195 45.6
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 8.9e-25 117.9 187 46.0
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 3.4e-24 115.9 192 44.8
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 1.3e-23 114.0 181 48.1
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.7e-23 113.6 181 46.4
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 2.2e-23 113.2 187 45.5
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 2.9e-23 112.8 180 46.7
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 3.8e-23 112.5 183 47.0
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 3.8e-23 112.5 192 43.2
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 3.8e-23 112.5 183 44.3
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 6.4e-23 111.7 185 45.4
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 6.4e-23 111.7 179 45.8
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 6.4e-23 111.7 187 45.5
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 8.4e-23 111.3 188 43.1
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 1.1e-22 110.9 189 45.0
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.9e-22 110.2 184 45.1
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 3.2e-22 109.4 180 43.3
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 9.2e-22 107.8 177 46.3
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 1.6e-21 107.1 178 45.5
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 1.6e-21 107.1 185 44.9
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 2.1e-21 106.7 187 46.0
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 2.7e-21 106.3 192 46.9
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 2.7e-21 106.3 196 43.4
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 7.8e-21 104.8 181 43.6
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.0e-20 104.4 193 44.0
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.7e-20 103.6 181 44.8
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 2.3e-20 103.2 179 43.6
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 3.0e-20 102.8 190 42.1
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 3.0e-20 102.8 167 44.9
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 3.9e-20 102.4 181 42.5
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 5.1e-20 102.1 179 43.0
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 1.1e-19 100.9 180 42.2
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 1.5e-19 100.5 177 45.8
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 1.9e-19 100.1 166 42.8
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 3.3e-19 99.4 187 43.3
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 3.3e-19 99.4 187 42.8
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 3.3e-19 99.4 204 38.7
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 5.6e-19 98.6 173 43.9
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 1.6e-18 97.1 185 43.2
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 1.6e-18 97.1 179 41.9
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 2.8e-18 96.3 191 41.9
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 3.6e-18 95.9 186 42.5
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 3.6e-18 95.9 195 40.5
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 6.2e-18 95.1 185 40.5
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 6.2e-18 95.1 182 42.9
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 1.1e-17 94.4 207 40.1
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 1.1e-17 94.4 186 42.5
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 3.1e-17 92.8 174 40.8
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 5.2e-17 92.0 187 42.2
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 5.2e-17 92.0 163 41.1
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.9e-17 91.7 175 40.6
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 1.5e-16 90.5 193 42.5
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 2.0e-16 90.1 188 41.5
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 3.4e-16 89.4 215 43.7
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.4e-16 89.0 179 41.3
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 7.6e-16 88.2 179 36.9
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 9.9e-16 87.8 207 38.6
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 2.2e-15 86.7 200 36.0
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 4.9e-15 85.5 182 38.5
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.9e-15 85.5 180 41.7
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 6.4e-15 85.1 192 40.1
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 6.4e-15 85.1 197 40.6
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 6.4e-15 85.1 128 44.5
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.4e-14 84.0 202 39.6
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.4e-14 84.0 128 46.1
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.4e-14 84.0 208 38.9
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.9e-14 83.6 114 53.5
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.4e-14 83.2 185 37.3
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.4e-14 83.2 181 39.8
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 4.2e-14 82.4 206 37.9
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 5.4e-14 82.0 202 37.6
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 7.1e-14 81.6 205 40.5
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 7.1e-14 81.6 161 42.9
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.2e-13 80.9 189 41.8
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 1.2e-13 80.9 190 37.4
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 1.2e-13 80.9 152 43.4
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 2.1e-13 80.1 182 40.1
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.1e-13 80.1 164 40.2
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 3.5e-13 79.3 205 40.5
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 4.6e-13 79.0 210 40.0
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 4.6e-13 79.0 210 40.0
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.6e-13 79.0 164 40.2
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 6.0e-13 78.6 196 40.3
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 6.0e-13 78.6 196 40.3
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 6.0e-13 78.6 189 34.9
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 6.0e-13 78.6 203 38.9
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 7.8e-13 78.2 210 40.0
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 7.8e-13 78.2 210 40.0
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 7.8e-13 78.2 195 42.6
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.0e-12 77.8 109 47.7
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.0e-12 77.8 107 49.5
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.3e-12 77.4 223 36.3
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 1.3e-12 77.4 183 41.0
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.7e-12 77.0 189 40.7
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 1.7e-12 77.0 177 39.0
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.3e-12 76.6 154 40.9
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 2.3e-12 76.6 214 39.7
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 3.0e-12 76.3 176 36.9
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 8.7e-12 74.7 201 36.8
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 2.5e-11 73.2 181 38.1
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 3.3e-11 72.8 130 44.6
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 3.3e-11 72.8 198 36.4
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 3.3e-11 72.8 199 37.7
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 5.6e-11 72.0 227 34.4
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 7.3e-11 71.6 153 38.6
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 9.6e-11 71.2 179 39.7
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.6e-11 71.2 166 39.8
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.8e-10 69.7 123 44.7
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 3.6e-10 69.3 147 35.4
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 4.8e-10 68.9 106 50.9
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.4e-09 67.4 216 33.8
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 1.8e-09 67.0 174 34.5
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 2.4e-09 66.6 174 36.8
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 2.4e-09 66.6 176 35.2
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.4e-09 66.6 157 33.8
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 3.1e-09 66.2 121 39.7
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 3.1e-09 66.2 112 49.1
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 6.9e-09 65.1 193 34.2
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 9.0e-09 64.7 202 36.1
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 4.5e-08 62.4 159 34.0
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 9.9e-08 61.2 105 44.8
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.7e-07 60.5 169 36.1
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.9e-07 59.7 223 33.6
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 2.9e-07 59.7 93 49.5
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 1.1e-06 57.8 110 40.9
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.4e-06 56.6 135 38.5
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.2e-06 55.8 107 42.1
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.1e-06 55.1 139 38.8


User provided reference genes

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