Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 1.9e-170 602.4 316 100.0
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 3.4e-130 468.8 322 80.4
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 7.5e-130 467.6 321 80.7
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 6.4e-113 411.4 295 74.2
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 1.1e-112 410.6 295 73.9
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 3.2e-112 409.1 320 71.9
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 1.6e-111 406.8 309 71.2
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 7.8e-111 404.4 318 71.7
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 1.0e-110 404.1 323 68.4
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 2.5e-109 399.4 267 80.1
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 9.5e-109 397.5 268 78.0
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 1.2e-108 397.1 261 78.5
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.6e-108 396.7 266 77.1
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.7e-108 395.2 267 79.0
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 4.7e-108 395.2 267 80.1
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.4e-107 393.7 319 69.6
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 4.0e-107 392.1 316 66.8
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 4.0e-107 392.1 266 79.7
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 5.2e-107 391.7 269 75.1
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 5.2e-107 391.7 328 65.9
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 6.8e-107 391.3 277 74.7
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 6.8e-107 391.3 275 75.3
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 1.2e-106 390.6 323 67.8
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 1.2e-106 390.6 289 73.7
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 1.5e-106 390.2 321 69.8
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 2.0e-106 389.8 264 78.0
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 2.0e-106 389.8 269 79.6
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.6e-106 389.4 264 78.8
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 3.4e-106 389.0 318 68.9
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 3.4e-106 389.0 319 66.1
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 3.4e-106 389.0 267 74.9
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 4.4e-106 388.7 267 74.2
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 5.8e-106 388.3 270 73.7
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 7.5e-106 387.9 313 66.1
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 7.5e-106 387.9 266 77.8
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 1.7e-105 386.7 321 67.9
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.9e-105 386.0 322 68.6
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 4.9e-105 385.2 318 65.4
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 4.9e-105 385.2 265 75.5
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 4.9e-105 385.2 318 67.6
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 4.9e-105 385.2 266 77.8
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 6.4e-105 384.8 319 65.8
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 8.3e-105 384.4 264 75.0
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 2.4e-104 382.9 267 74.2
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 2.4e-104 382.9 267 75.3
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 4.1e-104 382.1 312 69.9
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 5.4e-104 381.7 266 74.1
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 5.4e-104 381.7 316 65.5
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 5.4e-104 381.7 310 66.5
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 5.4e-104 381.7 267 74.5
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 5.4e-104 381.7 317 66.9
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.2e-103 380.6 268 76.1
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 2.7e-103 379.4 268 75.4
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 2.7e-103 379.4 321 65.7
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 4.6e-103 378.6 272 72.4
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 4.6e-103 378.6 267 73.8
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 7.8e-103 377.9 267 75.7
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.0e-102 377.5 321 67.0
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 1.3e-102 377.1 275 72.7
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 1.3e-102 377.1 267 77.2
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 1.7e-102 376.7 267 76.0
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 2.3e-102 376.3 326 67.2
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 8.6e-102 374.4 266 74.4
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 8.6e-102 374.4 305 70.2
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 8.6e-102 374.4 305 70.2
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.1e-101 374.0 271 74.5
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 1.5e-101 373.6 267 74.5
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 1.9e-101 373.2 267 76.4
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 3.3e-101 372.5 271 72.0
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 5.6e-101 371.7 314 63.4
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 7.3e-101 371.3 268 72.8
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 1.2e-100 370.5 265 73.2
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.7e-100 368.6 311 67.8
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 8.1e-100 367.9 268 73.9
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 1.1e-99 367.5 268 73.9
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 1.8e-99 366.7 273 74.4
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 2.3e-99 366.3 326 66.3
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 5.2e-99 365.2 270 71.5
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 2.6e-98 362.8 234 81.2
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 9.9e-98 360.9 313 64.9
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 1.3e-97 360.5 286 66.4
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 4.9e-97 358.6 270 69.6
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 4.1e-96 355.5 267 69.7
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 1.2e-95 354.0 242 74.4
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 4.6e-95 352.1 304 63.8
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 4.6e-95 352.1 304 63.8
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 1.3e-94 350.5 281 66.2
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 3.0e-94 349.4 293 65.2
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 2.8e-92 342.8 273 67.8
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 3.1e-91 339.3 325 61.5
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 4.0e-91 339.0 270 70.0
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 6.8e-91 338.2 269 68.0
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 6.8e-91 338.2 319 63.0
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 3.8e-89 332.4 270 66.7
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 4.9e-89 332.0 312 59.9
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 1.1e-88 330.9 266 67.7
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 1.1e-85 320.9 265 65.7
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 2.5e-85 319.7 234 71.8
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 7.6e-82 308.1 218 76.1
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 1.7e-81 307.0 274 66.1
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.4e-80 303.9 272 61.4
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 7.1e-80 301.6 322 53.4
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 1.6e-79 300.4 253 64.4
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 2.7e-79 299.7 320 55.9
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 1.6e-76 290.4 322 55.6
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 9.0e-75 284.6 243 65.4
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.8e-67 260.4 180 73.9
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 2.9e-65 253.1 277 55.6
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 2.7e-63 246.5 184 72.3
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 2.1e-60 236.9 169 72.2
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 6.2e-60 235.3 212 57.1
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 4.5e-58 229.2 281 50.2
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 1.8e-54 217.2 223 57.8
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 9.1e-43 178.3 264 46.6
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 2.0e-42 177.2 150 62.7
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 3.6e-39 166.4 180 57.8
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 2.0e-26 124.0 114 59.6
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 6.5e-25 119.0 81 71.6
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 2.0e-18 97.4 127 52.0
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 2.9e-17 93.6 127 50.4
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 3.8e-17 93.2 92 57.6
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 5.6e-08 62.8 66 53.0
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 2.1e-07 60.8 66 53.0
SMO343G0062 Selaginella moellendorffii HOM05D067698 ORTHO05D050854 8.9e-06 55.5 99 33.3


User provided reference genes

Program Settings