Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 4.5e-225 784.3 391 100.0
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 2.2e-187 659.1 391 82.1
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 5.5e-183 644.4 391 80.8
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 1.6e-161 573.2 392 71.7
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.9e-159 566.2 393 71.5
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 1.2e-158 563.5 392 71.2
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 2.1e-158 562.8 389 72.0
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.0e-157 560.5 391 70.8
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 1.4e-157 560.1 403 68.7
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 6.8e-157 557.8 390 70.5
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.5e-156 556.6 391 70.3
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 1.3e-155 553.5 391 70.8
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 4.9e-155 551.6 391 69.8
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 6.4e-155 551.2 391 69.1
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 2.4e-154 549.3 391 69.3
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 2.4e-154 549.3 391 69.1
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.6e-153 546.6 391 69.3
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 2.0e-153 546.2 390 70.0
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.7e-153 545.8 391 69.1
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.6e-153 545.0 391 68.5
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 4.6e-153 545.0 391 69.3
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 3.0e-152 542.3 392 68.6
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 3.0e-152 542.3 391 66.8
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 3.9e-152 542.0 390 68.2
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 5.0e-152 541.6 391 68.0
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 1.2e-150 537.0 391 65.7
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 1.6e-150 536.6 391 68.0
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 1.6e-150 536.6 392 66.8
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 2.1e-150 536.2 392 67.3
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 2.1e-150 536.2 391 68.5
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 2.8e-150 535.8 391 68.0
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 4.7e-150 535.0 391 67.0
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 4.7e-150 535.0 381 70.1
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 4.7e-150 535.0 391 67.0
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.4e-149 533.5 394 68.0
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 3.1e-149 532.3 391 66.5
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 6.8e-149 531.2 390 66.2
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 8.9e-149 530.8 381 69.0
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 2.0e-148 529.6 394 67.3
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 2.0e-148 529.6 391 66.8
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 2.6e-148 529.3 392 65.1
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 4.4e-148 528.5 394 67.3
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 4.4e-148 528.5 448 61.4
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.3e-147 526.9 390 67.4
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 6.4e-147 524.6 391 65.5
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 1.1e-146 523.9 391 67.0
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 1.1e-146 523.9 392 66.3
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.9e-146 523.1 391 66.8
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 2.4e-146 522.7 392 67.1
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 2.4e-146 522.7 392 66.3
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 3.2e-146 522.3 394 66.2
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 5.4e-146 521.5 394 65.7
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 7.1e-146 521.2 392 66.3
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 9.2e-146 520.8 393 65.9
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 4.6e-145 518.5 392 66.3
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 6.0e-145 518.1 417 64.7
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 7.8e-145 517.7 406 62.3
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 1.0e-144 517.3 394 65.7
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 1.0e-144 517.3 391 63.9
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 1.7e-144 516.5 417 64.0
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 1.7e-144 516.5 390 66.7
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 6.6e-144 514.6 385 64.4
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 8.6e-144 514.2 392 66.6
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.1e-143 513.8 391 65.0
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.5e-143 513.5 391 63.9
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 2.5e-143 512.7 394 65.5
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 2.5e-143 512.7 390 63.8
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 3.3e-143 512.3 391 64.5
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 7.3e-143 511.1 426 62.0
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 9.5e-143 510.8 426 61.7
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.6e-142 510.0 386 63.7
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 8.1e-142 507.7 467 57.4
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 5.8e-140 501.5 390 62.6
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.7e-139 500.0 390 62.6
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 1.7e-139 500.0 368 66.6
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 3.7e-139 498.8 380 64.7
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 1.3e-136 490.3 359 67.7
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 3.9e-136 488.8 393 62.3
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 7.6e-132 474.6 359 66.3
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 2.9e-131 472.6 503 52.5
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 5.4e-130 468.4 330 68.8
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 1.2e-129 467.2 393 58.5
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 1.1e-127 460.7 442 56.8
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 4.4e-124 448.7 381 62.2
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.9e-122 443.4 432 56.9
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 6.0e-121 438.3 391 57.3
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 9.6e-119 431.0 390 56.9
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 3.2e-114 416.0 353 58.6
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 4.3e-111 405.6 313 64.5
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 6.9e-109 398.3 285 67.7
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 7.6e-108 394.8 360 56.9
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 2.5e-106 389.8 272 68.8
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 6.0e-105 385.2 401 49.6
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 2.3e-104 383.3 398 51.3
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.3e-103 379.4 295 66.4
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.1e-98 364.4 401 46.6
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 3.1e-93 346.3 291 60.1
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.2e-92 344.4 396 47.7
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 8.8e-88 328.2 250 65.2
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 2.0e-84 317.0 235 66.4
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.3e-80 303.5 220 67.7
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 3.9e-80 302.8 487 38.0
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 4.4e-79 299.3 229 65.5
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.3e-72 276.9 372 40.3
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 1.7e-70 270.8 193 70.5
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 1.6e-68 264.2 321 43.9
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 2.9e-46 190.3 142 64.1
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 3.3e-42 176.8 536 27.2
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 5.2e-40 169.5 135 64.4
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 1.2e-31 141.7 109 61.5
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 4.4e-31 139.8 103 65.0
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 2.9e-30 137.1 171 45.6
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.9e-29 134.4 80 80.0
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-27 128.3 119 55.5
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.1e-27 126.3 119 54.6
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.1e-27 126.3 119 54.6
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.1e-27 126.3 119 54.6
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.5e-26 124.8 119 53.8
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.5e-26 124.0 119 53.8
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 2.1e-25 120.9 79 72.2
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.6e-25 120.2 90 63.3
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 3.6e-25 120.2 190 37.9
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.2e-24 116.3 90 61.1
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.2e-24 116.3 83 66.3
PRCOL_00001496 Prasinoderma coloniale HOM05D002536 ORTHO05D006290 1.2e-23 115.2 322 28.9
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 3.2e-21 107.1 254 34.3
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.4e-21 106.3 80 63.8
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 1.6e-20 104.8 109 50.5
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.3e-19 101.7 69 69.6
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.1e-19 99.8 69 68.1
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 5.1e-19 99.8 71 66.2
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.5e-18 97.4 60 75.0
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 2.1e-17 94.4 126 44.4
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.2e-16 89.7 62 66.1
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.2e-16 89.7 62 66.1
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 8.9e-16 89.0 62 66.1
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 3.4e-15 87.0 53 77.4
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.4e-15 86.7 62 62.9
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 3.8e-14 83.6 65 66.2
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.4e-13 81.6 62 62.9
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 6.2e-09 66.2 90 42.2
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 1.4e-08 65.1 115 35.7
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.5e-07 61.6 74 43.2
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 1.7e-06 58.2 34 79.4


User provided reference genes

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