Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0325151 Helianthus annuus HOM05D004905 ORTHO05D005456 6.5e-211 737.6 530 100.0
HanXRQChr09g0262681 Helianthus annuus HOM05D004905 ORTHO05D005456 2.7e-124 449.9 547 63.4
ECA232G5032 Erigeron canadensis HOM05D004905 ORTHO05D005456 3.4e-103 379.8 542 59.4
Lsat_1_v5_gn_2_80961 Lactuca sativa HOM05D004905 ORTHO05D005456 6.8e-75 285.8 527 40.8
Lsat_1_v5_gn_4_155561 Lactuca sativa HOM05D004905 ORTHO05D005456 2.4e-72 277.3 527 44.2
ECA238G0899 Erigeron canadensis HOM05D004905 ORTHO05D005456 1.5e-66 258.1 494 38.1
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 1.7e-62 244.6 567 40.9
DCAR_010704 Daucus carota HOM05D004905 ORTHO05D005456 3.8e-62 243.4 563 36.6
Atru.chr1.1616 Acer truncatum HOM05D004905 ORTHO05D005456 5.6e-61 239.6 570 46.1
TAR426G0001 Trochodendron aralioides HOM05D004905 ORTHO05D005456 9.5e-61 238.8 560 38.8
TAR535G0011 Trochodendron aralioides HOM05D004905 ORTHO05D005456 2.1e-60 237.7 561 40.8
Aqoxy3G04036 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 2.8e-60 237.3 548 39.1
Dinv33966 Davidia involucrata HOM05D001288 ORTHO05D005456 3.0e-59 233.8 557 47.2
QL04p012071 Quercus lobata HOM05D004905 ORTHO05D005456 1.5e-58 231.5 572 34.4
QL02p050316 Quercus lobata HOM05D004905 ORTHO05D005456 3.4e-58 230.3 572 35.5
Potri.004G095800 Populus trichocarpa HOM05D004905 ORTHO05D005456 9.8e-58 228.8 568 40.0
Eucgr.F02791 Eucalyptus grandis HOM05D004905 ORTHO05D005456 1.3e-57 228.4 573 36.3
Migut.H00239 Erythranthe guttata HOM05D004905 ORTHO05D005456 1.4e-56 224.9 551 43.7
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 4.1e-56 223.4 542 33.6
Nn4g23955 Nelumbo nucifera HOM05D004905 ORTHO05D005456 5.4e-56 223.0 560 45.9
Potri.017G118900 Populus trichocarpa HOM05D004905 ORTHO05D005456 7.0e-56 222.6 573 35.1
Prupe.3G148500 Prunus persica HOM05D004905 ORTHO05D005456 1.2e-55 221.9 571 45.2
TWI53G1125 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 2.7e-55 220.7 540 35.4
MSTRG.23594 Avicennia marina HOM05D004905 ORTHO05D005456 1.7e-54 218.0 535 41.5
Haze_14185 Corylus avellana HOM05D004905 ORTHO05D005456 3.0e-54 217.2 565 35.0
Glyma.18G294100 Glycine max HOM05D004905 ORTHO05D005456 5.0e-54 216.5 568 44.2
COL.COLO4_09375 Corchorus olitorius HOM05D004905 ORTHO05D005456 6.6e-54 216.1 552 34.1
Cfa007892 Carpinus fangiana HOM05D004905 ORTHO05D005456 8.6e-54 215.7 577 36.2
Lj4P184T26 Lonicera japonica HOM05D004905 ORTHO05D005456 1.1e-53 215.3 471 43.3
Ca_08091_v3 Cicer arietinum L. HOM05D004905 ORTHO05D005456 1.9e-53 214.5 565 33.6
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 2.5e-53 214.2 567 33.2
Medtr7g082660 Medicago truncatula HOM05D004905 ORTHO05D005456 6.2e-52 209.5 563 33.4
VMungo1383G0301 Vigna mungo HOM05D004905 ORTHO05D005456 8.0e-52 209.1 566 45.6
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea HOM05D004905 ORTHO05D005456 2.3e-51 207.6 542 39.1
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea HOM05D004905 ORTHO05D005456 2.3e-51 207.6 542 39.1
RcHm_v2.0_Chr2g0123711 Rosa chinensis HOM05D004905 ORTHO05D005456 2.3e-51 207.6 566 40.8
HanXRQChr12g0357381 Helianthus annuus HOM05D004905 ORTHO05D005456 5.2e-51 206.5 509 43.2
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 1.5e-50 204.9 573 31.9
Psat3g097720 Pisum sativum HOM05D004905 ORTHO05D005456 2.6e-50 204.1 566 32.9
FAN28G0686 Fragaria x ananassa HOM05D004905 ORTHO05D005456 5.8e-50 203.0 571 43.8
FAN26G1687 Fragaria x ananassa HOM05D004905 ORTHO05D005456 7.5e-50 202.6 571 43.6
TPR.G16546 Trifolium pratense HOM05D004905 ORTHO05D005456 7.5e-50 202.6 555 32.4
Actinidia15900 Actinidia chinensis HOM05D004905 ORTHO05D005456 9.8e-50 202.2 490 40.4
Lj1g0028143 Lotus japonicus HOM05D004905 ORTHO05D005456 4.9e-49 199.9 561 44.4
CANSAT11G1581 Cannabis sativa HOM05D004905 ORTHO05D005456 1.4e-48 198.4 564 36.0
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 4.1e-48 196.8 507 33.7
FvH4_1g25551 Fragaria vesca HOM05D004905 ORTHO05D005456 4.1e-48 196.8 571 44.1
FAN19G0313 Fragaria x ananassa HOM05D004905 ORTHO05D005456 4.1e-48 196.8 571 44.1
Thecc.04G128800 Theobroma cacao HOM05D004905 ORTHO05D005456 7.8e-47 192.6 564 37.9
Lalb_Chr10g0091451 Lupinus albus HOM05D004905 ORTHO05D005456 1.0e-46 192.2 555 38.0
Nn3g17953 Nelumbo nucifera HOM05D004905 ORTHO05D005456 5.6e-45 186.4 544 37.5
TWI74G1312 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 5.6e-45 186.4 474 32.9
Peaxi162Scf00877g00001 Petunia axillaris HOM05D004905 ORTHO05D005456 1.2e-44 185.3 555 38.0
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 2.1e-44 184.5 564 31.2
SGA_v2.0_scaffold202G41468 Striga asiatica HOM05D004905 ORTHO05D005456 4.7e-44 183.3 545 33.6
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla HOM05D004905 ORTHO05D005456 8.1e-44 182.6 473 49.7
MD09G1256700 Malus domestica HOM05D004905 ORTHO05D005456 1.1e-43 182.2 554 43.9
VMungo0464G1170 Vigna mungo HOM05D004905 ORTHO05D005456 1.4e-43 181.8 531 33.5
Lalb_Chr04g0257631 Lupinus albus HOM05D004905 ORTHO05D005456 4.0e-43 180.3 571 30.8
Manes.02G071500 Manihot esculenta HOM05D004905 ORTHO05D005456 2.6e-42 177.6 504 44.4
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 2.6e-42 177.6 491 34.0
Glyma.02G089100 Glycine max HOM05D001288 ORTHO05D001123 3.7e-41 173.7 534 43.3
Gohir.D11G172100 Gossypium hirsutum HOM05D004905 ORTHO05D005456 8.3e-41 172.6 539 37.8
DCAR_011263 Daucus carota HOM05D004905 ORTHO05D005456 2.4e-40 171.0 545 29.9
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 2.4e-40 171.0 497 30.8
Rhsim10G0072700 Rhododendron simsii HOM05D004905 ORTHO05D005456 7.1e-40 169.5 566 42.0
Gorai.007G184500 Gossypium raimondii HOM05D004905 ORTHO05D005456 9.2e-40 169.1 539 37.5
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea HOM05D004905 ORTHO05D005456 1.2e-39 168.7 560 36.1
CDE02G1873 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 1.2e-39 168.7 459 35.5
HanXRQChr07g0190621 Helianthus annuus HOM05D004905 ORTHO05D005456 1.2e-39 168.7 498 39.8
vmacro22954 Vaccinium macrocarpon HOM05D004905 ORTHO05D005456 2.1e-39 167.9 564 37.4
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea HOM05D004905 ORTHO05D005456 2.7e-39 167.5 560 36.1
EL10Ac2g04529 Beta vulgaris HOM05D004905 ORTHO05D005456 3.5e-39 167.2 529 37.1
CiPaw.03G064700 Carya illinoinensis HOM05D004905 ORTHO05D005456 3.5e-39 167.2 545 37.1
Sopen02g031010 Solanum pennellii HOM05D004905 ORTHO05D005456 1.7e-38 164.9 566 29.2
AUR62009040 Chenopodium quinoa HOM05D004905 ORTHO05D005456 3.0e-38 164.1 527 35.9
Cpa.g.sc170.31 Carica papaya HOM05D004905 ORTHO05D005456 3.9e-38 163.7 558 35.5
BraA07t30992Z Brassica rapa HOM05D004905 ORTHO05D005456 1.9e-37 161.4 458 35.2
A07p33640 Brassica napus HOM05D004905 ORTHO05D005456 5.6e-37 159.8 458 34.9
Phvul.004G002200 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 5.6e-37 159.8 528 32.8
Phvul.008G008400 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 5.6e-37 159.8 559 42.4
Gohir.A11G165900 Gossypium hirsutum HOM05D004905 ORTHO05D005456 7.3e-37 159.5 554 37.2
PGR004G1909 Punica granatum HOM05D004905 ORTHO05D005456 8.1e-36 156.0 550 44.4
BolC6t39105H Brassica oleracea HOM05D004905 ORTHO05D005456 1.1e-35 155.6 550 32.7
Gohir.A07G175500 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.1e-35 155.6 563 37.3
Aa31LG2G3310 Aethionema arabicum HOM05D004905 ORTHO05D005456 3.1e-35 154.1 467 29.1
CARHR058960 Cardamine hirsuta HOM05D004905 ORTHO05D005456 3.1e-35 154.1 468 32.5
C06p40220 Brassica napus HOM05D000005 ORTHO05D005456 4.0e-35 153.7 552 33.0
SalBow3G3699 Salvia bowleyana HOM05D004905 ORTHO05D005456 4.0e-35 153.7 540 32.8
AL2G25050 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 5.2e-35 153.3 468 29.3
BcaC08g46129 Brassica carinata HOM05D004905 ORTHO05D005456 1.5e-34 151.8 547 32.5
Cc07_g08530 Coffea canephora HOM05D004905 ORTHO05D005456 1.5e-34 151.8 574 39.5
Gohir.D07G181800 Gossypium hirsutum HOM05D004905 ORTHO05D005456 3.4e-34 150.6 559 36.5
BcaB03g15228 Brassica carinata HOM05D004905 ORTHO05D005456 4.4e-34 150.2 454 33.0
Gorai.001G202800 Gossypium raimondii HOM05D004905 ORTHO05D005456 5.8e-34 149.8 559 37.0
Lj2C439T5 Lonicera japonica HOM05D004905 ORTHO05D005456 7.6e-34 149.4 518 30.1
AT1G66840 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 3.8e-33 147.1 470 34.7
Carub.0002s1304 Capsella rubella HOM05D004905 ORTHO05D005456 3.8e-33 147.1 466 30.7
Oeu041980.1 Olea europaea HOM05D004905 ORTHO05D005456 4.9e-33 146.7 535 39.3
PGSC0003DMG400026397 Solanum tuberosum HOM05D004905 ORTHO05D005456 4.9e-33 146.7 566 28.8
CSS0018291 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 1.1e-32 145.6 288 40.3
PSO017G0866 Papaver somniferum HOM05D004905 ORTHO05D005456 1.1e-32 145.6 474 37.1
Glyma.19G001900 Glycine max HOM05D004905 ORTHO05D005456 4.1e-32 143.7 547 38.4
MD17G1250200 Malus domestica HOM05D004905 ORTHO05D005456 2.7e-31 141.0 378 50.0
PSO478G4495 Papaver somniferum HOM05D004905 ORTHO05D005456 4.6e-31 140.2 581 30.3
Sed0000790 Sechium edule HOM05D004905 ORTHO05D005456 7.8e-31 139.4 569 35.7
Sc10g0001050 Simmondsia chinensis HOM05D004905 ORTHO05D005456 1.0e-30 139.0 516 36.6
Dinv34793 Davidia involucrata HOM05D004905 ORTHO05D005456 4.3e-29 133.7 335 51.6
Sp7g03910 Schrenkiella parvula HOM05D004905 ORTHO05D005456 3.6e-28 130.6 457 31.3
BraA04t16780Z Brassica rapa HOM05D004905 ORTHO05D005456 1.4e-27 128.6 466 28.5
ATR0681G096 Amborella trichopoda HOM05D004905 ORTHO05D005456 1.8e-27 128.3 476 41.4
THA.LOC104823849 Tarenaya hassleriana HOM05D004905 ORTHO05D005456 1.8e-27 128.3 468 32.1
Sp5g21810 Schrenkiella parvula HOM05D004905 ORTHO05D005456 3.1e-27 127.5 466 31.8
AT5G38150 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 5.2e-27 126.7 543 34.3
BcaB06g27171 Brassica carinata HOM05D004905 ORTHO05D005456 5.2e-27 126.7 462 27.5
Carub.0005s1253 Capsella rubella HOM05D004905 ORTHO05D005456 1.5e-26 125.2 484 26.9
Aa31LG9G17230 Aethionema arabicum HOM05D004905 ORTHO05D005456 2.0e-26 124.8 440 35.7
A04p11140 Brassica napus HOM05D004905 ORTHO05D005456 2.0e-26 124.8 486 27.6
C04p44880 Brassica napus HOM05D004905 ORTHO05D005456 3.8e-25 120.6 464 27.6
CAN.G625.56 Capsicum annuum HOM05D004905 ORTHO05D005456 1.1e-24 119.0 566 26.9
Hund13701 Selenicereus undatus HOM05D004905 ORTHO05D005456 3.2e-24 117.5 516 29.7
AUR62023266 Chenopodium quinoa HOM05D004905 ORTHO05D005456 2.7e-23 114.4 523 32.1
unitig_37.g12374 Utricularia gibba HOM05D004905 ORTHO05D005456 4.6e-23 113.6 440 33.4
AL7G52720 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 1.0e-22 112.5 468 31.0
unitig_899.g14515 Utricularia gibba HOM05D004905 ORTHO05D005456 5.1e-22 110.2 508 25.4
GSVIVG01030977001 Vitis vinifera HOM05D004905 ORTHO05D005456 1.9e-21 108.2 207 39.1
CDE08G0600 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 1.6e-20 105.1 440 27.5
Ah.10g037620 Amaranthus hybridus HOM05D004905 ORTHO05D005456 9.0e-19 99.4 434 32.3
CsaV3_2G033850 Cucumis sativus L. HOM05D004905 ORTHO05D005456 9.0e-19 99.4 573 34.0
Aqoxy4G00894 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 5.8e-18 96.7 181 35.9
BolC4t26067H Brassica oleracea HOM05D004905 ORTHO05D005456 7.6e-18 96.3 464 26.5
Zm00001eb156080 Zea mays HOM05D004905 ORTHO05D005456 1.9e-16 91.7 566 24.2
MELO3C008158.2 Cucumis melo HOM05D004905 ORTHO05D005456 4.2e-16 90.5 565 33.8
AUR62023221 Chenopodium quinoa HOM05D004905 ORTHO05D005456 5.4e-16 90.1 174 39.1
ClCG11G007710 Citrullus lanatus HOM05D004905 ORTHO05D005456 5.4e-16 90.1 565 31.9
Thhalv10027702m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 5.1e-14 83.6 459 31.2
AUR62023222 Chenopodium quinoa HOM05D004905 ORTHO05D005456 6.7e-14 83.2 211 33.2
Os01g0692300 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 1.9e-13 81.6 451 31.7
Glyma.05G002000 Glycine max HOM05D004905 ORTHO05D005456 2.5e-13 81.3 521 38.2
Thhalv10018290m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 3.3e-13 80.9 468 34.4
QL06p049807 Quercus lobata HOM05D004905 ORTHO05D005456 9.6e-13 79.3 290 28.3
BcaC02g09630 Brassica carinata HOM05D004905 ORTHO05D005456 2.4e-11 74.7 398 24.6
Haze_04421 Corylus avellana HOM05D004905 ORTHO05D019407 5.3e-11 73.6 147 37.4
HPP92_008194 Vanilla planifolia HOM05D004905 ORTHO05D005456 6.9e-11 73.2 306 38.9
Aqoxy4G01116 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 1.9e-08 65.1 125 37.6
AUR62039051 Chenopodium quinoa HOM05D004905 ORTHO05D005456 5.5e-08 63.5 74 54.1
AUR62016893 Chenopodium quinoa HOM05D022647 ORTHO05D005456 9.3e-08 62.8 74 52.7
AUR62044563 Chenopodium quinoa HOM05D022647 ORTHO05D005456 9.3e-08 62.8 74 52.7
Os05g0550100 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 7.9e-07 59.7 392 22.2
AUR62016892 Chenopodium quinoa HOM05D022647 ORTHO05D005456 1.0e-06 59.3 74 50.0
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 6.7e-06 56.6 376 28.2


User provided reference genes

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