Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0324981 Helianthus annuus HOM05D005354 ORTHO05D006315 1.1e-75 286.6 147 100.0
HanXRQChr03g0088591 Helianthus annuus HOM05D005354 ORTHO05D006315 4.2e-35 151.8 98 82.7
Lsat_1_v5_gn_6_91180 Lactuca sativa HOM05D005354 ORTHO05D006315 1.4e-30 136.7 94 78.7
Sed0003796 Sechium edule HOM05D005354 ORTHO05D006315 2.2e-28 129.4 95 73.7
ECA240G4831 Erigeron canadensis HOM05D005354 ORTHO05D006315 3.8e-28 128.6 97 70.1
HanXRQChr17g0553071 Helianthus annuus HOM05D005354 ORTHO05D006315 5.0e-28 128.3 70 90.0
CsaV3_3G002740 Cucumis sativus L. HOM05D005354 ORTHO05D006315 6.5e-28 127.9 95 72.6
MELO3C013942.2 Cucumis melo HOM05D005354 ORTHO05D006315 8.5e-28 127.5 95 72.6
ClCG10G002710 Citrullus lanatus HOM05D005354 ORTHO05D006315 1.1e-27 127.1 95 72.6
Nn1g01007 Nelumbo nucifera HOM05D005354 ORTHO05D006315 1.5e-27 126.7 91 72.5
Lj2A217G28 Lonicera japonica HOM05D005354 ORTHO05D006315 2.5e-27 125.9 118 57.6
CSS0003507 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 3.2e-27 125.6 104 65.4
CSS0039308 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 3.2e-27 125.6 104 65.4
Rhsim07G0108200 Rhododendron simsii HOM05D005354 ORTHO05D006315 4.2e-27 125.2 99 65.7
MBI04_g09494_MAGBIO Magnolia biondii HOM05D005354 ORTHO05D006315 5.5e-27 124.8 96 67.7
Glyma.01G209800 Glycine max HOM05D005354 ORTHO05D006315 9.4e-27 124.0 95 70.5
Manes.02G039200 Manihot esculenta HOM05D005354 ORTHO05D006315 9.4e-27 124.0 95 69.5
ATR0317G109 Amborella trichopoda HOM05D005354 ORTHO05D006315 1.2e-26 123.6 96 68.8
Actinidia27464 Actinidia chinensis HOM05D005354 ORTHO05D006315 2.1e-26 122.9 96 68.8
vmacro14088 Vaccinium macrocarpon HOM05D005354 ORTHO05D006315 2.1e-26 122.9 95 69.5
RcHm_v2.0_Chr7g0203181 Rosa chinensis HOM05D005354 ORTHO05D006315 3.6e-26 122.1 95 68.4
Potri.003G076600 Populus trichocarpa HOM05D005354 ORTHO05D006315 4.7e-26 121.7 95 66.3
Dinv39144 Davidia involucrata HOM05D005354 ORTHO05D006315 6.1e-26 121.3 96 67.7
Sabra01G0133300 Salix brachista HOM05D005354 ORTHO05D006315 6.1e-26 121.3 95 67.4
Thecc.03G252000 Theobroma cacao HOM05D005354 ORTHO05D006315 6.1e-26 121.3 90 70.0
Sc01g0008460 Simmondsia chinensis HOM05D005354 ORTHO05D006315 8.0e-26 120.9 95 67.4
Ciclev10019626m.g Citrus clementina HOM05D005354 ORTHO05D006315 1.8e-25 119.8 95 66.3
Migut.E00837 Erythranthe guttata HOM05D005354 ORTHO05D006315 1.8e-25 119.8 96 67.7
Migut.E01656 Erythranthe guttata HOM05D005354 ORTHO05D006315 1.8e-25 119.8 96 67.7
Manes.01G080300 Manihot esculenta HOM05D005354 ORTHO05D006315 1.8e-25 119.8 95 64.2
CANSAT21G0216 Cannabis sativa HOM05D005354 ORTHO05D006315 2.3e-25 119.4 95 67.4
TAR629G2416 Trochodendron aralioides HOM05D005354 ORTHO05D006315 2.3e-25 119.4 96 64.6
GSVIVG01001321001 Vitis vinifera HOM05D005354 ORTHO05D006315 2.3e-25 119.4 91 67.0
Phvul.002G062800 Phaseolus vulgaris HOM05D005354 ORTHO05D006315 3.0e-25 119.0 90 71.1
Os10g0507800 Oryza sativa ssp. japonica HOM05D005354 ORTHO05D006315 4.0e-25 118.6 96 65.6
Potri.001G158200 Populus trichocarpa HOM05D005354 ORTHO05D006315 4.0e-25 118.6 95 65.3
AL4G31810 Arabidopsis lyrata HOM05D005354 ORTHO05D006315 5.2e-25 118.2 96 66.7
CSS0011263 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 5.2e-25 118.2 96 66.7
MD06G1057900 Malus domestica HOM05D005354 ORTHO05D006315 5.2e-25 118.2 95 67.4
Haze_07917 Corylus avellana HOM05D005354 ORTHO05D006315 6.8e-25 117.9 90 68.9
DCAR_027776 Daucus carota HOM05D005354 ORTHO05D006315 6.8e-25 117.9 102 60.8
Cc08_g12480 Coffea canephora HOM05D005354 ORTHO05D006315 8.8e-25 117.5 96 63.5
Prupe.5G069200 Prunus persica HOM05D005354 ORTHO05D006315 8.8e-25 117.5 95 66.3
QL12p012213 Quercus lobata HOM05D005354 ORTHO05D006315 8.8e-25 117.5 95 67.4
Aqoxy7G00759 Aquilegia oxysepala HOM05D005354 ORTHO05D006315 1.2e-24 117.1 96 64.6
AT2G35720 Arabidopsis thaliana HOM05D005354 ORTHO05D006315 1.2e-24 117.1 96 66.7
CARHR129960 Cardamine hirsuta HOM05D005354 ORTHO05D006315 1.2e-24 117.1 96 65.6
Oeu040216.1 Olea europaea HOM05D005354 ORTHO05D006315 1.2e-24 117.1 95 66.3
PSO017G6196 Papaver somniferum HOM05D005354 ORTHO05D006315 1.2e-24 117.1 91 65.9
PSO170G3683 Papaver somniferum HOM05D005354 ORTHO05D006315 1.2e-24 117.1 91 65.9
MSTRG.25527 Avicennia marina HOM05D005354 ORTHO05D006315 1.5e-24 116.7 96 66.7
CDE04G0953 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 1.5e-24 116.7 96 63.5
VMungo1215G2766 Vigna mungo HOM05D005354 ORTHO05D006315 1.5e-24 116.7 94 68.1
EL10Ac5g13072 Beta vulgaris HOM05D005354 ORTHO05D006315 2.6e-24 115.9 99 61.6
AUR62042791 Chenopodium quinoa HOM05D005354 ORTHO05D006315 2.6e-24 115.9 95 60.0
AUR62044247 Chenopodium quinoa HOM05D005354 ORTHO05D006315 2.6e-24 115.9 95 60.0
AUR62007515 Chenopodium quinoa HOM05D005354 ORTHO05D006315 3.4e-24 115.5 94 60.6
Hund14561 Selenicereus undatus HOM05D005354 ORTHO05D006315 3.4e-24 115.5 95 61.1
Atru.chr9.1319 Acer truncatum HOM05D005354 ORTHO05D006315 4.4e-24 115.2 90 68.9
Ah.02g116720 Amaranthus hybridus HOM05D005354 ORTHO05D006315 4.4e-24 115.2 90 66.7
CAN.G1367.6 Capsicum annuum HOM05D005354 ORTHO05D006315 4.4e-24 115.2 97 62.9
Dinv21636 Davidia involucrata HOM05D005354 ORTHO05D006315 4.4e-24 115.2 91 68.1
CiPaw.11G153900 Carya illinoinensis HOM05D005354 ORTHO05D006315 5.7e-24 114.8 90 68.9
Thhalv10016484m.g Eutrema salsugineum HOM05D005354 ORTHO05D006315 5.7e-24 114.8 96 64.6
Nitab4.5_0007598g0020 Nicotiana tabacum HOM05D005354 ORTHO05D006315 5.7e-24 114.8 96 63.5
A04p27170 Brassica napus HOM05D005354 ORTHO05D006315 9.8e-24 114.0 95 65.3
Ca_24574_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 9.8e-24 114.0 95 65.3
Solyc08g078660.3 Solanum lycopersicum HOM05D005354 ORTHO05D006315 9.8e-24 114.0 96 62.5
Sopen08g027140 Solanum pennellii HOM05D005354 ORTHO05D006315 9.8e-24 114.0 96 62.5
Eucgr.E00426 Eucalyptus grandis HOM05D005354 ORTHO05D006315 1.3e-23 113.6 95 63.2
BcaB06g28865 Brassica carinata HOM05D005354 ORTHO05D006315 1.7e-23 113.2 95 64.2
CDE12G0157 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 1.7e-23 113.2 96 61.5
Nitab4.5_0000312g0100 Nicotiana tabacum HOM05D005354 ORTHO05D006315 1.7e-23 113.2 96 62.5
Carub.0004s1745 Capsella rubella HOM05D005354 ORTHO05D006315 2.2e-23 112.8 96 63.5
Peaxi162Scf00174g00027 Petunia axillaris HOM05D005354 ORTHO05D006315 2.2e-23 112.8 96 62.5
Lj2g0013106 Lotus japonicus HOM05D005354 ORTHO05D006315 2.8e-23 112.5 90 67.8
PGR042G1820 Punica granatum HOM05D005354 ORTHO05D006315 2.8e-23 112.5 95 63.2
FAN04G2371 Fragaria x ananassa HOM05D005354 ORTHO05D006315 3.7e-23 112.1 95 63.2
Lalb_Chr09g0324401 Lupinus albus HOM05D005354 ORTHO05D006315 3.7e-23 112.1 95 65.3
SGA_v2.0_scaffold54G19448 Striga asiatica HOM05D005354 ORTHO05D006315 4.8e-23 111.7 91 64.8
BraA04t18215Z Brassica rapa HOM05D005354 ORTHO05D006315 6.3e-23 111.3 95 64.2
Lalb_Chr05g0214491 Lupinus albus HOM05D005354 ORTHO05D006315 6.3e-23 111.3 95 65.3
Sp4g17990 Schrenkiella parvula HOM05D005354 ORTHO05D006315 6.3e-23 111.3 95 63.2
TWI60G0726 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 6.3e-23 111.3 91 65.9
TWI81G0349 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 6.3e-23 111.3 95 64.2
FAN08G0881 Fragaria x ananassa HOM05D005354 ORTHO05D006315 1.1e-22 110.5 95 62.1
FAN13G0823 Fragaria x ananassa HOM05D005354 ORTHO05D006315 1.1e-22 110.5 95 62.1
THA.LOC104815494 Tarenaya hassleriana HOM05D005354 ORTHO05D006315 1.1e-22 110.5 96 61.5
BcaC02g07676 Brassica carinata HOM05D005354 ORTHO05D006315 1.4e-22 110.2 95 62.1
C04p64680 Brassica napus HOM05D005354 ORTHO05D006315 1.4e-22 110.2 95 62.1
BolC4t27945H Brassica oleracea HOM05D005354 ORTHO05D006315 1.4e-22 110.2 95 62.1
Aa31LG9G12210 Aethionema arabicum HOM05D000808 ORTHO05D006315 1.8e-22 109.8 96 62.5
arahy.Tifrunner.gnm1.ann1.BT71C1 Arachis hypogaea HOM05D005354 ORTHO05D006315 1.8e-22 109.8 95 64.2
arahy.Tifrunner.gnm1.ann1.LCH2QT Arachis hypogaea HOM05D005354 ORTHO05D006315 1.8e-22 109.8 95 64.2
COL.COLO4_37182 Corchorus olitorius HOM05D005354 ORTHO05D006315 1.8e-22 109.8 90 64.4
Medtr5g012530 Medicago truncatula HOM05D005354 ORTHO05D006315 2.4e-22 109.4 98 61.2
FvH4_5g18830 Fragaria vesca HOM05D005354 ORTHO05D006315 4.1e-22 108.6 95 61.1
FAN18G0938 Fragaria x ananassa HOM05D005354 ORTHO05D006315 5.4e-22 108.2 95 61.1
FAN18G2353 Fragaria x ananassa HOM05D005354 ORTHO05D006315 5.4e-22 108.2 95 61.1
Zm00001eb043970 Zea mays HOM05D005354 ORTHO05D006315 5.4e-22 108.2 96 60.4
Zm00001eb442210 Zea mays HOM05D005354 ORTHO05D006315 5.4e-22 108.2 96 60.4
TPR.G25879 Trifolium pratense HOM05D005354 ORTHO05D006315 9.1e-22 107.5 95 62.1
Duzib084G0473 Durio zibethinus HOM05D005354 ORTHO05D006315 1.6e-21 106.7 90 61.1
Gorai.003G171200 Gossypium raimondii HOM05D005354 ORTHO05D006315 2.7e-21 105.9 100 56.0
HPP92_015107 Vanilla planifolia HOM05D005354 ORTHO05D006315 5.9e-21 104.8 95 60.0
HPP92_015115 Vanilla planifolia HOM05D005354 ORTHO05D006315 5.9e-21 104.8 95 60.0
Psat2g177520 Pisum sativum HOM05D005354 ORTHO05D006315 1.0e-20 104.0 90 61.1
Gohir.A03G008300 Gossypium hirsutum HOM05D005354 ORTHO05D006315 1.7e-20 103.2 95 56.8
Gohir.D03G162600 Gossypium hirsutum HOM05D005354 ORTHO05D006315 1.7e-20 103.2 95 56.8
BcaB08g34772 Brassica carinata HOM05D001035 ORTHO05D006315 3.3e-19 99.0 78 66.7
HPP92_015036 Vanilla planifolia HOM05D005354 ORTHO05D006315 3.3e-19 99.0 82 64.6
Prupe.5G069100 Prunus persica HOM05D005354 ORTHO05D006315 1.6e-18 96.7 104 51.0
SHI35069 Sapria himalayana HOM05D005354 ORTHO05D006315 2.8e-18 95.9 95 55.8
Mapoly0099s0041 Marchantia polymorpha HOM05D005354 ORTHO05D006315 6.1e-18 94.7 89 57.3
Pp3c26_4130 Physcomitrium patens HOM05D005354 ORTHO05D006315 1.8e-17 93.2 96 53.1
Pp3c3_14420 Physcomitrium patens HOM05D005354 ORTHO05D006315 2.0e-16 89.7 98 51.0
SMO172G0088 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 9.8e-16 87.4 85 56.5
CBR_g27963 Chara braunii HOM05D005354 ORTHO05D006315 1.8e-09 66.6 68 47.1
unitig_8.g3912 Utricularia gibba HOM05D005354 ORTHO05D006315 9.8e-08 60.8 63 60.3
Cre06.g308150 Chlamydomonas reinhardtii HOM05D005354 ORTHO05D006315 1.3e-07 60.5 62 46.8


User provided reference genes

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