Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0324561 Helianthus annuus HOM05D002352 ORTHO05D015016 1.3e-90 336.3 164 100.0
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 1.3e-37 160.2 105 79.0
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 3.7e-32 142.1 105 71.4
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 6.0e-30 134.8 103 65.0
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 4.3e-28 128.6 102 65.7
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 7.5e-25 117.9 99 61.6
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 1.7e-24 116.7 103 61.2
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 2.9e-24 115.9 105 58.1
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 4.9e-24 115.2 102 60.8
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 1.9e-23 113.2 103 59.2
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 4.1e-23 112.1 101 59.4
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 9.2e-23 110.9 100 57.0
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 1.6e-22 110.2 98 55.1
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.7e-22 109.4 103 57.3
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 2.7e-22 109.4 102 56.9
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 3.5e-22 109.0 99 56.6
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 3.5e-22 109.0 105 58.1
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 4.6e-22 108.6 102 56.9
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 4.6e-22 108.6 102 55.9
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 4.6e-22 108.6 102 55.9
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.0e-21 107.5 91 57.1
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.0e-21 107.5 96 54.2
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 1.3e-21 107.1 100 55.0
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 1.3e-21 107.1 100 54.0
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.7e-21 106.7 101 54.5
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 3.0e-21 105.9 100 54.0
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.9e-21 105.5 102 51.0
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 6.6e-21 104.8 103 52.4
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 8.6e-21 104.4 95 57.9
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.1e-20 104.0 98 52.0
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 1.5e-20 103.6 105 51.4
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.5e-20 103.6 100 54.0
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 1.5e-20 103.6 93 55.9
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 1.5e-20 103.6 102 52.9
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.9e-20 103.2 95 56.8
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 3.3e-20 102.4 98 54.1
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 4.3e-20 102.1 103 49.5
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 9.5e-20 100.9 105 53.3
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 1.2e-19 100.5 106 52.8
CSS0022382 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 4.7e-19 98.6 101 54.5
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 4.7e-19 98.6 98 52.0
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 6.2e-19 98.2 105 50.5
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 6.2e-19 98.2 100 46.0
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.1e-18 97.4 99 51.5
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 4.0e-18 95.5 100 48.0
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.0e-18 95.5 101 50.5
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 4.0e-18 95.5 101 49.5
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 4.0e-18 95.5 101 49.5
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 5.2e-18 95.1 105 48.6
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 6.8e-18 94.7 100 47.0
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 6.8e-18 94.7 100 47.0
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 1.2e-17 94.0 101 48.5
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.0e-17 93.2 96 53.1
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 2.0e-17 93.2 100 50.0
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 4.4e-17 92.0 100 50.0
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 4.4e-17 92.0 90 53.3
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 5.8e-17 91.7 100 48.0
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 5.8e-17 91.7 85 55.3
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 5.8e-17 91.7 100 48.0
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 5.8e-17 91.7 98 49.0
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 7.6e-17 91.3 104 46.2
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 7.6e-17 91.3 103 49.5
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 9.9e-17 90.9 98 51.0
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 1.3e-16 90.5 92 52.2
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 1.3e-16 90.5 101 49.5
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.3e-16 90.5 93 52.7
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.3e-16 90.5 90 52.2
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.3e-16 90.5 91 50.5
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 2.9e-16 89.4 100 49.0
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 3.8e-16 89.0 100 48.0
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 4.9e-16 88.6 92 52.2
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 4.9e-16 88.6 100 47.0
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 6.4e-16 88.2 92 51.1
CSS0011152 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 8.4e-16 87.8 102 49.0
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 8.4e-16 87.8 98 48.0
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.4e-15 87.0 103 46.6
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 1.9e-15 86.7 100 50.0
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 2.4e-15 86.3 100 48.0
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 2.4e-15 86.3 103 46.6
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.4e-15 86.3 95 47.4
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 3.2e-15 85.9 100 47.0
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 3.2e-15 85.9 100 47.0
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 3.2e-15 85.9 99 45.5
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 3.2e-15 85.9 96 51.0
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 4.2e-15 85.5 85 52.9
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 4.2e-15 85.5 100 49.0
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 4.2e-15 85.5 95 49.5
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 5.4e-15 85.1 100 47.0
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 5.4e-15 85.1 100 46.0
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 7.1e-15 84.7 103 45.6
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 9.2e-15 84.3 85 51.8
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 9.2e-15 84.3 85 51.8
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 9.2e-15 84.3 100 49.0
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.2e-14 84.0 92 47.8
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.2e-14 84.0 92 47.8
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 1.6e-14 83.6 103 44.7
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 1.6e-14 83.6 100 46.0
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 1.6e-14 83.6 100 46.0
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 1.6e-14 83.6 100 46.0
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 2.1e-14 83.2 98 46.9
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 2.7e-14 82.8 85 50.6
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 2.7e-14 82.8 100 47.0
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 2.7e-14 82.8 92 52.2
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.7e-14 82.8 96 49.0
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 4.6e-14 82.0 85 50.6
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.6e-14 82.0 92 51.1
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.6e-14 82.0 92 51.1
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.6e-14 82.0 92 51.1
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.6e-14 82.0 92 51.1
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 6.0e-14 81.6 85 50.6
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 6.0e-14 81.6 85 50.6
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 6.0e-14 81.6 85 50.6
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 7.8e-14 81.3 100 44.0
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 7.8e-14 81.3 100 46.0
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 6.6e-13 78.2 100 41.0
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 1.1e-12 77.4 83 54.2
CSS0036155 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 1.5e-12 77.0 83 51.8
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.5e-12 77.0 93 45.2
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.5e-12 77.0 93 46.2
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 4.3e-12 75.5 89 43.8
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 5.6e-12 75.1 93 44.1
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 9.6e-12 74.3 101 38.6
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 2.1e-11 73.2 97 46.4
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 2.8e-11 72.8 59 61.0
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 6.2e-11 71.6 101 42.6
Hma1.2p1_0356F.1_g134010 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 1.1e-10 70.9 62 64.5
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.4e-10 70.5 100 43.0
CSS0040448 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 1.8e-10 70.1 80 50.0
Hma1.2p1_1431F.1_g282990 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 1.8e-10 70.1 61 62.3
Hma1.2p1_1294F.1_g273870 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 9.0e-10 67.8 61 60.7
CSS0043147 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 7.6e-09 64.7 83 47.0
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 2.9e-08 62.8 78 50.0
Psat3g070400 Pisum sativum HOM05D002352 ORTHO05D015016 1.4e-07 60.5 61 54.1
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 3.2e-07 59.3 96 35.4
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 4.2e-07 58.9 89 41.6
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 4.2e-07 58.9 86 36.0
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 4.2e-07 58.9 96 35.4
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 7.8e-06 54.7 42 57.1


User provided reference genes

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