Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 6.6e-68 262.7 209 100.0
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 3.4e-40 170.6 234 73.5
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 1.1e-38 165.6 234 71.4
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 4.5e-24 117.1 138 50.0
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 2.2e-23 114.8 137 49.6
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 5.5e-22 110.2 171 42.7
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 1.6e-21 108.6 129 51.9
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 7.9e-21 106.3 170 42.9
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 7.9e-21 106.3 170 42.9
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 2.3e-20 104.8 169 40.8
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 3.0e-20 104.4 152 45.4
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 3.9e-20 104.0 163 41.1
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 6.7e-20 103.2 167 40.7
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 1.1e-19 102.4 173 41.0
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 1.1e-19 102.4 173 41.0
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 1.5e-19 102.1 164 42.1
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 2.6e-19 101.3 144 45.8
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 4.4e-19 100.5 163 41.1
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 2.2e-18 98.2 57 80.7
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 3.7e-18 97.4 149 41.6
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 3.7e-18 97.4 133 42.9
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 4.8e-18 97.1 59 78.0
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 8.2e-18 96.3 169 40.2
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 8.2e-18 96.3 164 40.9
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 1.4e-17 95.5 147 44.9
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 1.4e-17 95.5 155 41.9
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 1.4e-17 95.5 63 71.4
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 2.4e-17 94.7 168 38.7
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 2.4e-17 94.7 157 39.5
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 2.4e-17 94.7 60 71.7
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 4.1e-17 94.0 144 43.1
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 5.3e-17 93.6 178 37.6
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 1.2e-16 92.4 169 36.1
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 1.2e-16 92.4 60 70.0
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 1.2e-16 92.4 121 46.3
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 1.2e-16 92.4 169 37.9
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 1.2e-16 92.4 59 71.2
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 2.0e-16 91.7 60 66.7
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.0e-16 91.7 60 68.3
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 2.6e-16 91.3 139 41.7
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 4.5e-16 90.5 59 71.2
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 4.5e-16 90.5 145 42.8
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 4.5e-16 90.5 164 39.0
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 7.7e-16 89.7 155 40.0
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 7.7e-16 89.7 155 40.0
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 7.7e-16 89.7 145 39.3
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 1.0e-15 89.4 79 55.7
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 1.3e-15 89.0 60 66.7
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 1.3e-15 89.0 108 47.2
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 1.7e-15 88.6 77 59.7
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 1.7e-15 88.6 148 41.2
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 3.8e-15 87.4 55 69.1
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 3.8e-15 87.4 55 69.1
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 5.0e-15 87.0 147 40.8
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 6.5e-15 86.7 150 38.7
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 8.5e-15 86.3 148 39.2
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 8.5e-15 86.3 148 38.5
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 8.5e-15 86.3 144 41.0
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 1.1e-14 85.9 130 42.3
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 1.1e-14 85.9 96 49.0
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 1.9e-14 85.1 130 42.3
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 1.9e-14 85.1 147 38.8
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 7.2e-14 83.2 106 45.3
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 7.2e-14 83.2 148 37.2
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 9.4e-14 82.8 154 37.7
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 1.2e-13 82.4 100 48.0
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 1.2e-13 82.4 153 39.9
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 2.7e-13 81.3 157 37.6
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 2.7e-13 81.3 141 39.0
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 6.1e-13 80.1 43 83.7
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 6.1e-13 80.1 141 38.3
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 8.0e-13 79.7 156 37.8
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 1.0e-12 79.3 157 37.6
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 2.3e-12 78.2 143 37.1
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 3.0e-12 77.8 163 37.4
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 3.9e-12 77.4 162 34.6
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 5.2e-12 77.0 52 65.4
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 6.7e-12 76.6 154 40.3
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 1.5e-11 75.5 76 53.9
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 2.0e-11 75.1 62 58.1
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 3.3e-11 74.3 127 37.8
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 4.4e-11 73.9 150 36.0
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 5.7e-11 73.6 76 48.7
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 1.3e-10 72.4 142 36.6
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 4.8e-10 70.5 127 39.4
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 6.3e-10 70.1 98 48.0
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 8.2e-10 69.7 154 33.8
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 8.2e-10 69.7 162 35.2
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.4e-09 68.2 58 55.2
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.1e-09 67.8 153 34.6
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 5.3e-09 67.0 57 57.9
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 5.3e-09 67.0 79 49.4
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 9.1e-09 66.2 56 57.1
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.6e-08 65.5 115 36.5
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 2.0e-08 65.1 56 53.6
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 2.0e-08 65.1 127 36.2
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 2.0e-08 65.1 57 61.4
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 3.5e-08 64.3 56 55.4
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.5e-08 64.3 51 56.9
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 5.9e-08 63.5 80 45.0
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 2.9e-07 61.2 56 51.8
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 8.5e-07 59.7 80 38.8
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 8.5e-07 59.7 80 38.8
TPR.G15758 Trifolium pratense HOM05D000069 ORTHO05D001849 1.1e-06 59.3 110 34.5
Psat5g018720 Pisum sativum HOM05D006739 ORTHO05D008402 1.9e-06 58.5 85 37.6
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.9e-06 58.5 41 65.9
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 1.9e-06 58.5 51 52.9


User provided reference genes

Program Settings