Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0324231 Helianthus annuus HOM05D006340 ORTHO05D007568 1.7e-231 806.2 605 100.0
Lsat_1_v5_gn_5_40480 Lactuca sativa HOM05D006340 ORTHO05D007568 4.0e-164 582.4 616 81.5
ECA246G2180 Erigeron canadensis HOM05D006340 ORTHO05D007568 6.2e-157 558.5 607 81.5
CSS0010691 Camellia sinensis var. sinensis HOM05D006340 ORTHO05D007568 6.3e-93 345.9 660 63.5
TAR362G0132 Trochodendron aralioides HOM05D006340 ORTHO05D007568 6.9e-92 342.4 661 63.2
Lju926C5T2 Lonicera japonica HOM05D006340 ORTHO05D007568 2.6e-91 340.5 642 59.2
Actinidia35518 Actinidia chinensis HOM05D006340 ORTHO05D007568 1.7e-90 337.8 656 62.5
QL03p014074 Quercus lobata HOM05D006340 ORTHO05D007568 3.0e-87 327.0 656 62.3
Actinidia16863 Actinidia chinensis HOM05D006340 ORTHO05D007568 1.1e-84 318.5 685 50.4
Dinv30898 Davidia involucrata HOM05D006340 ORTHO05D007568 1.8e-84 317.8 650 41.2
TAR633G1326 Trochodendron aralioides HOM05D006340 ORTHO05D007568 2.0e-83 314.3 633 62.7
Cc02_g35160 Coffea canephora HOM05D006340 ORTHO05D007568 1.7e-82 311.2 652 57.1
Hma1.2p1_0008F-1.1_g005560 Hydrangea macrophylla HOM05D006340 ORTHO05D007568 8.5e-82 308.9 645 62.6
Cfa006707 Carpinus fangiana HOM05D006340 ORTHO05D007568 1.1e-81 308.5 656 61.7
Lj5C328T5 Lonicera japonica HOM05D006340 ORTHO05D007568 5.5e-81 306.2 636 58.3
Potri.005G013000 Populus trichocarpa HOM05D006340 ORTHO05D007568 9.4e-81 305.4 652 61.2
Potri.013G008200 Populus trichocarpa HOM05D006340 ORTHO05D007568 1.6e-80 304.7 651 61.4
Duzib128G1170 Durio zibethinus HOM05D006340 ORTHO05D007568 4.7e-80 303.1 623 63.6
Ciclev10000538m.g Citrus clementina HOM05D006340 ORTHO05D007568 3.3e-78 297.0 652 62.0
AUR62006742 Chenopodium quinoa HOM05D006340 ORTHO05D007568 5.7e-78 296.2 630 61.1
Haze_04056 Corylus avellana HOM05D006340 ORTHO05D007568 5.7e-78 296.2 661 56.7
CsaV3_2G007150 Cucumis sativus L. HOM05D006340 ORTHO05D007568 5.7e-78 296.2 633 61.3
Nn3g21728 Nelumbo nucifera HOM05D006340 ORTHO05D007568 9.7e-78 295.4 642 62.0
DCAR_025287 Daucus carota HOM05D006340 ORTHO05D007568 8.2e-77 292.4 659 59.8
Atru.chr2.357 Acer truncatum HOM05D006340 ORTHO05D007568 1.8e-76 291.2 662 59.5
Prupe.6G312400 Prunus persica HOM05D006340 ORTHO05D007568 7.0e-76 289.3 658 60.5
Thecc.05G323700 Theobroma cacao HOM05D006340 ORTHO05D007568 7.0e-76 289.3 660 59.5
Duzib177G0712 Durio zibethinus HOM05D006340 ORTHO05D007568 2.7e-75 287.3 663 60.0
CiPaw.07G030100 Carya illinoinensis HOM05D006340 ORTHO05D007568 3.5e-75 287.0 660 60.8
AUR62000387 Chenopodium quinoa HOM05D006340 ORTHO05D007568 2.2e-74 284.3 630 60.5
ClCG02G014860 Citrullus lanatus HOM05D006340 ORTHO05D007568 2.2e-74 284.3 659 45.2
TWI36G0703 Tripterygium wilfordii HOM05D006340 ORTHO05D007568 3.8e-74 283.5 658 62.0
GSVIVG01031248001 Vitis vinifera HOM05D006340 ORTHO05D007568 8.5e-74 282.3 652 59.4
Cpa.g.sc48.167 Carica papaya HOM05D006340 ORTHO05D007568 1.1e-73 282.0 659 60.1
MBI18_g32031_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 7.2e-73 279.3 669 45.7
Phvul.007G201700 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 1.6e-72 278.1 636 60.7
Sed0011043 Sechium edule HOM05D006340 ORTHO05D007568 8.0e-72 275.8 650 60.2
MBI19_g03242_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 1.0e-71 275.4 636 48.9
Manes.09G177400 Manihot esculenta HOM05D006340 ORTHO05D007568 1.0e-71 275.4 648 52.2
COL.COLO4_05545 Corchorus olitorius HOM05D006340 ORTHO05D007568 3.4e-70 270.4 656 59.1
Sabra13G0006900 Salix brachista HOM05D006340 ORTHO05D007568 3.4e-70 270.4 659 49.8
Glyma.20G096700 Glycine max HOM05D006340 ORTHO05D007568 7.5e-70 269.2 647 60.1
MELO3C004178.2 Cucumis melo HOM05D006340 ORTHO05D007568 2.2e-69 267.7 644 49.4
Glyma.10G146700 Glycine max HOM05D006340 ORTHO05D007568 2.2e-69 267.7 643 60.5
PGSC0003DMG400002763 Solanum tuberosum HOM05D006340 ORTHO05D007568 2.8e-69 267.3 664 59.0
Sed0017369 Sechium edule HOM05D006340 ORTHO05D007568 1.4e-68 265.0 645 57.2
arahy.Tifrunner.gnm1.ann1.35WTTC Arachis hypogaea HOM05D006340 ORTHO05D007568 2.0e-67 261.2 633 60.5
Rhsim11G0096500 Rhododendron simsii HOM05D006340 ORTHO05D007568 2.0e-67 261.2 660 52.7
Sopen01g044100 Solanum pennellii HOM05D006340 ORTHO05D007568 3.5e-67 260.4 660 59.4
PSO761G0363 Papaver somniferum HOM05D006340 ORTHO05D007568 5.9e-67 259.6 641 58.3
PGR031G1700 Punica granatum HOM05D006340 ORTHO05D007568 7.7e-67 259.2 613 61.5
CAN.G1076.21 Capsicum annuum HOM05D006340 ORTHO05D007568 1.0e-66 258.8 666 52.7
DCAR_029344 Daucus carota HOM05D006340 ORTHO05D007568 1.0e-66 258.8 624 46.5
Aqoxy2G02721 Aquilegia oxysepala HOM05D006340 ORTHO05D007568 1.3e-66 258.5 663 57.3
VMungo0720G2454 Vigna mungo HOM05D006340 ORTHO05D007568 2.9e-66 257.3 626 58.6
Gohir.D11G284300 Gossypium hirsutum HOM05D006340 ORTHO05D007568 5.0e-66 256.5 642 58.6
Zm00001eb340330 Zea mays HOM05D006340 ORTHO05D007568 6.5e-66 256.1 632 55.9
vmacro01568 Vaccinium macrocarpon HOM05D006340 ORTHO05D007568 1.1e-65 255.4 657 47.8
arahy.Tifrunner.gnm1.ann1.31L8TN Arachis hypogaea HOM05D006340 ORTHO05D007568 3.3e-65 253.8 636 59.7
MD00G1208300 Malus domestica HOM05D006340 ORTHO05D007568 3.3e-65 253.8 650 57.7
Nitab4.5_0004525g0020 Nicotiana tabacum HOM05D006340 ORTHO05D007568 5.5e-65 253.1 648 53.5
PSO210G6591 Papaver somniferum HOM05D006340 ORTHO05D007568 1.2e-64 251.9 540 65.0
CiPaw.08G154900 Carya illinoinensis HOM05D006340 ORTHO05D007568 2.1e-64 251.1 657 59.2
Ca_10176_v3 Cicer arietinum L. HOM05D006340 ORTHO05D007568 2.1e-64 251.1 647 57.7
ATR0693G206 Amborella trichopoda HOM05D006340 ORTHO05D007568 3.6e-64 250.4 658 57.9
CANSAT54G2981 Cannabis sativa HOM05D006340 ORTHO05D007568 1.2e-62 245.4 638 58.0
Gohir.A08G205400 Gossypium hirsutum HOM05D006340 ORTHO05D007568 2.6e-62 244.2 654 56.7
Ah.06g195990 Amaranthus hybridus HOM05D006340 ORTHO05D007568 3.4e-62 243.8 630 57.8
Gorai.004G236300 Gossypium raimondii HOM05D006340 ORTHO05D007568 7.5e-62 242.7 653 56.7
Medtr1g084120 Medicago truncatula HOM05D006340 ORTHO05D007568 1.3e-61 241.9 645 54.1
Eucgr.H03294 Eucalyptus grandis HOM05D006340 ORTHO05D007568 1.7e-61 241.5 646 58.0
Gorai.007G307200 Gossypium raimondii HOM05D006340 ORTHO05D007568 1.7e-61 241.5 642 57.8
Nitab4.5_0001338g0100 Nicotiana tabacum HOM05D006340 ORTHO05D007568 1.7e-61 241.5 683 50.7
TPR.G2586 Trifolium pratense HOM05D006340 ORTHO05D007568 2.2e-61 241.1 650 56.2
Hund07311 Selenicereus undatus HOM05D006340 ORTHO05D007568 3.7e-61 240.4 622 58.5
Zm00001eb130130 Zea mays HOM05D006340 ORTHO05D007568 6.3e-61 239.6 626 49.7
Oeu052936.1 Olea europaea HOM05D006340 ORTHO05D007568 2.0e-59 234.6 652 57.4
MD12G1205300 Malus domestica HOM05D006340 ORTHO05D007568 2.7e-59 234.2 657 56.2
Gohir.D08G222500 Gossypium hirsutum HOM05D006340 ORTHO05D007568 7.8e-59 232.6 664 55.3
EL10Ac4g09463 Beta vulgaris HOM05D006340 ORTHO05D007568 6.6e-58 229.6 630 58.3
Oeu053742.1 Olea europaea HOM05D006340 ORTHO05D007568 2.5e-57 227.6 641 56.9
Os01g0300900 Oryza sativa ssp. japonica HOM05D006340 ORTHO05D007568 3.3e-57 227.3 635 51.5
Dinv24462 Davidia involucrata HOM05D006340 ORTHO05D007568 5.6e-57 226.5 347 48.4
Lalb_Chr02g0147781 Lupinus albus HOM05D006340 ORTHO05D007568 2.1e-56 224.6 629 56.6
Migut.N00937 Erythranthe guttata HOM05D006340 ORTHO05D007568 1.0e-55 222.2 638 52.8
Phvul.001G224800 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 1.4e-55 221.9 634 56.9
Glyma.19G228200 Glycine max HOM05D006340 ORTHO05D007568 2.3e-55 221.1 627 57.9
Sabra05G0021400 Salix brachista HOM05D006340 ORTHO05D007568 3.7e-53 213.8 679 32.8
Glyma.03G231000 Glycine max HOM05D006340 ORTHO05D007568 4.1e-52 210.3 643 57.1
Lj5g0007706 Lotus japonicus HOM05D006340 ORTHO05D007568 5.4e-52 209.9 653 54.1
VMungo1383G0056 Vigna mungo HOM05D006340 ORTHO05D007568 1.5e-49 201.8 632 55.4
RcHm_v2.0_Chr3g0457201 Rosa chinensis HOM05D006340 ORTHO05D007568 4.7e-48 196.8 684 52.9
HPP92_005420 Vanilla planifolia HOM05D006340 ORTHO05D007568 2.0e-46 191.4 640 57.2
arahy.Tifrunner.gnm1.ann1.Y7QP4L Arachis hypogaea HOM05D006340 ORTHO05D007568 2.2e-45 188.0 596 52.3
THA.LOC104816894 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 3.7e-45 187.2 529 51.0
FAN14G3207 Fragaria x ananassa HOM05D006340 ORTHO05D007568 6.4e-45 186.4 688 52.9
FvH4_6g07501 Fragaria vesca HOM05D006340 ORTHO05D007568 2.4e-44 184.5 688 53.2
FAN02G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 2.1e-43 181.4 681 53.0
Peaxi162Scf01061g00014 Petunia axillaris HOM05D006340 ORTHO05D007568 8.6e-42 176.0 506 33.0
Psat6g152600 Pisum sativum HOM05D006340 ORTHO05D007568 2.3e-39 167.9 501 46.3
Solyc01g100600.4 Solanum lycopersicum HOM05D006340 ORTHO05D007568 5.2e-39 166.8 494 48.6
Sabra05G0009200 Salix brachista HOM05D006340 ORTHO05D007568 2.0e-38 164.9 203 80.3
Sabra05G0020800 Salix brachista HOM05D006340 ORTHO05D007568 7.5e-38 162.9 203 79.8
SGA_v2.0_scaffold5G02892 Striga asiatica HOM05D006340 ORTHO05D007568 3.2e-36 157.5 643 40.3
MSTRG.27938 Avicennia marina HOM05D006340 ORTHO05D007568 1.5e-33 148.7 355 37.2
arahy.Tifrunner.gnm1.ann1.9H9EE5 Arachis hypogaea HOM05D006340 ORTHO05D007568 1.9e-33 148.3 610 40.7
Sabra05G0020900 Salix brachista HOM05D006340 ORTHO05D007568 2.1e-32 144.8 284 38.4
Dinv24463 Davidia involucrata HOM05D006340 ORTHO05D007568 2.0e-30 138.3 175 85.1
Sc16g0009070 Simmondsia chinensis HOM05D006340 ORTHO05D007568 7.6e-30 136.3 468 48.9
CDE02G0367 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 6.4e-29 133.3 590 44.4
FAN09G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 9.2e-28 129.4 526 46.0
MSTRG.27937 Avicennia marina HOM05D006340 ORTHO05D007568 4.6e-27 127.1 199 70.4
PSO541G0443 Papaver somniferum HOM05D006340 ORTHO05D007568 3.3e-25 120.9 288 37.2
SalBow3G0642 Salvia bowleyana HOM05D006340 ORTHO05D007568 5.6e-25 120.2 282 39.4
CDE08G0055 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 2.4e-23 114.8 453 45.3
Gohir.A11G274100 Gossypium hirsutum HOM05D006340 ORTHO05D007568 5.8e-22 110.2 480 44.8
unitig_52.g17414 Utricularia gibba HOM05D006340 ORTHO05D007568 1.7e-21 108.6 231 48.5
Sabra05G0022400 Salix brachista HOM05D006340 ORTHO05D007568 2.9e-21 107.8 179 40.8
THA.LOC104824492 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 5.4e-20 103.6 64 68.8
FAN05G4753 Fragaria x ananassa HOM05D006340 ORTHO05D007568 2.3e-18 98.2 422 49.3
ECA169G0006 Erigeron canadensis HOM05D006340 ORTHO05D007568 2.7e-11 74.7 50 66.0
SMO115G0101 Selaginella moellendorffii HOM05D006340 ORTHO05D007568 2.7e-11 74.7 701 31.4
AagrBONN_evm.TU.Sc2ySwM_117.2646 Anthoceros agrestis HOM05D001137 ORTHO05D007568 6.2e-08 63.5 198 25.3
MBI18_g03639_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 4.0e-07 60.8 69 46.4
HanXRQChr14g0455821 Helianthus annuus HOM05D001137 ORTHO05D001967 5.3e-07 60.5 45 51.1
Lj5A256T13 Lonicera japonica HOM05D001137 ORTHO05D001967 6.9e-07 60.1 48 54.2
Ca_10452_v3 Cicer arietinum L. HOM05D001137 ORTHO05D001967 1.5e-06 58.9 45 48.9
Lsat_1_v5_gn_2_103340 Lactuca sativa HOM05D001137 ORTHO05D001967 1.5e-06 58.9 45 51.1
Lalb_Chr02g0151091 Lupinus albus HOM05D001137 ORTHO05D001967 1.5e-06 58.9 45 51.1
TPR.G37727 Trifolium pratense HOM05D001137 ORTHO05D001967 1.5e-06 58.9 45 48.9
CARHR208890 Cardamine hirsuta HOM05D001137 ORTHO05D001967 2.0e-06 58.5 45 51.1
Thhalv10013283m.g Eutrema salsugineum HOM05D001137 ORTHO05D001967 2.0e-06 58.5 45 51.1
Lj5g0022587 Lotus japonicus HOM05D001137 ORTHO05D001967 2.0e-06 58.5 45 48.9
Medtr1g090740 Medicago truncatula HOM05D001137 ORTHO05D001967 2.0e-06 58.5 45 48.9
Psat6g173160 Pisum sativum HOM05D001137 ORTHO05D001967 2.0e-06 58.5 45 48.9
Thecc.10G089100 Theobroma cacao HOM05D001137 ORTHO05D001967 2.0e-06 58.5 45 48.9
Gohir.A13G174200 Gossypium hirsutum HOM05D001137 ORTHO05D001967 2.6e-06 58.2 43 53.5
Gohir.D13G179900 Gossypium hirsutum HOM05D001137 ORTHO05D001967 2.6e-06 58.2 43 53.5
Gorai.013G205300 Gossypium raimondii HOM05D001137 ORTHO05D001967 2.6e-06 58.2 43 53.5
Lj5A258T11 Lonicera japonica HOM05D001137 ORTHO05D001967 2.6e-06 58.2 48 52.1
Manes.10G052700 Manihot esculenta HOM05D001137 ORTHO05D001967 2.6e-06 58.2 45 48.9
Phvul.007G140800 Phaseolus vulgaris HOM05D001137 ORTHO05D001967 2.6e-06 58.2 45 48.9
CAN.G1652.17 Capsicum annuum HOM05D001137 ORTHO05D001967 3.4e-06 57.8 43 53.5
Duzib114G0923 Durio zibethinus HOM05D001137 ORTHO05D001967 3.4e-06 57.8 45 48.9
Glyma.10G198000 Glycine max HOM05D001137 ORTHO05D001967 3.4e-06 57.8 45 46.7
Gohir.D05G292500 Gossypium hirsutum HOM05D001137 ORTHO05D001967 3.4e-06 57.8 45 48.9
Gorai.009G308900 Gossypium raimondii HOM05D001137 ORTHO05D001967 3.4e-06 57.8 45 48.9
HanXRQChr08g0218271 Helianthus annuus HOM05D001137 ORTHO05D001967 3.4e-06 57.8 45 48.9
TWI12G0524 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 3.4e-06 57.8 43 53.5
Haze_16773 Corylus avellana HOM05D001137 ORTHO05D001967 4.5e-06 57.4 45 46.7
Gohir.A05G291400 Gossypium hirsutum HOM05D001137 ORTHO05D001967 4.5e-06 57.4 45 48.9
Lj2A24T64 Lonicera japonica HOM05D001137 ORTHO05D001967 4.5e-06 57.4 45 46.7
Lalb_Chr06g0169971 Lupinus albus HOM05D001137 ORTHO05D001967 4.5e-06 57.4 45 48.9
Nitab4.5_0002144g0040 Nicotiana tabacum HOM05D001137 ORTHO05D001967 4.5e-06 57.4 43 53.5
Nitab4.5_0002432g0050 Nicotiana tabacum HOM05D001137 ORTHO05D001967 4.5e-06 57.4 43 53.5
Rhsim09G0145600 Rhododendron simsii HOM05D001137 ORTHO05D001967 4.5e-06 57.4 45 46.7
SGA_v2.0_scaffold176G39381 Striga asiatica HOM05D001137 ORTHO05D001967 4.5e-06 57.4 45 48.9
A03p01670 Brassica napus HOM05D001137 ORTHO05D001967 5.8e-06 57.0 45 51.1
BraA03t09542Z Brassica rapa HOM05D001137 ORTHO05D001967 5.8e-06 57.0 45 51.1
DCAR_006390 Daucus carota HOM05D001137 ORTHO05D001967 5.8e-06 57.0 45 48.9
FAN09G3209 Fragaria x ananassa HOM05D001137 ORTHO05D001967 5.8e-06 57.0 43 53.5
Nitab4.5_0004754g0030 Nicotiana tabacum HOM05D001137 ORTHO05D001967 5.8e-06 57.0 43 53.5
Psat5g193320 Pisum sativum HOM05D001137 ORTHO05D001967 5.8e-06 57.0 45 48.9
arahy.Tifrunner.gnm1.ann1.F394NJ Arachis hypogaea HOM05D001137 ORTHO05D001967 7.6e-06 56.6 45 46.7
BcaNung04622 Brassica carinata HOM05D001137 ORTHO05D001967 7.6e-06 56.6 45 48.9
CSS0017275 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D001967 7.6e-06 56.6 45 44.4
Lj3A936G52 Lonicera japonica HOM05D001137 ORTHO05D001967 7.6e-06 56.6 45 44.4
Potri.010G230300 Populus trichocarpa HOM05D001137 ORTHO05D001967 7.6e-06 56.6 45 48.9
Sabra10G0178700 Salix brachista HOM05D001137 ORTHO05D001967 7.6e-06 56.6 45 48.9
Sp6g38320 Schrenkiella parvula HOM05D001137 ORTHO05D001967 7.6e-06 56.6 45 48.9
GSVIVG01016168001 Vitis vinifera HOM05D001137 ORTHO05D001967 7.6e-06 56.6 45 48.9
Aa31LG5G15960 Aethionema arabicum HOM05D001137 ORTHO05D001967 9.9e-06 56.2 43 53.5
AL6G14040 Arabidopsis lyrata HOM05D001137 ORTHO05D001967 9.9e-06 56.2 45 48.9
AT5G04420 Arabidopsis thaliana HOM05D001137 ORTHO05D001967 9.9e-06 56.2 45 48.9
arahy.Tifrunner.gnm1.ann1.UDP5HN Arachis hypogaea HOM05D001137 ORTHO05D001967 9.9e-06 56.2 45 44.4
Carub.0006s0336 Capsella rubella HOM05D001137 ORTHO05D001967 9.9e-06 56.2 45 48.9
Potri.008G031200 Populus trichocarpa HOM05D001137 ORTHO05D001967 9.9e-06 56.2 45 48.9
Prupe.2G091900 Prunus persica HOM05D001137 ORTHO05D001967 9.9e-06 56.2 45 44.4
Sabra08G0020600 Salix brachista HOM05D001137 ORTHO05D001967 9.9e-06 56.2 45 48.9
Sc20g0001540 Simmondsia chinensis HOM05D001137 ORTHO05D001967 9.9e-06 56.2 43 51.2


User provided reference genes

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