Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 1.8e-66 256.1 163 100.0
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.6e-27 126.7 123 66.7
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.6e-27 126.7 126 57.1
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.0e-26 124.0 124 57.3
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.0e-26 122.5 123 57.7
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.5e-25 120.2 121 57.0
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.5e-25 120.2 132 54.5
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 2.0e-25 119.8 127 55.9
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 2.0e-25 119.8 123 56.1
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.6e-25 119.4 123 55.3
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.6e-25 119.4 123 55.3
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 2.6e-25 119.4 126 57.9
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 5.7e-25 118.2 124 57.3
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 7.5e-25 117.9 128 55.5
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 7.5e-25 117.9 128 54.7
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.3e-24 117.1 123 53.7
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 1.7e-24 116.7 123 56.9
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 8.3e-24 114.4 123 55.3
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 8.3e-24 114.4 124 55.6
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.1e-23 114.0 124 52.4
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.1e-23 114.0 120 53.3
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 1.1e-23 114.0 123 52.8
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 2.4e-23 112.8 123 55.3
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 3.2e-23 112.5 124 51.6
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 4.1e-23 112.1 118 64.4
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 5.4e-23 111.7 124 54.0
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.4e-23 111.7 123 52.0
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 7.0e-23 111.3 124 53.2
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 7.0e-23 111.3 131 50.4
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 9.2e-23 110.9 118 62.7
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 9.2e-23 110.9 126 53.2
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.7e-22 109.4 121 55.4
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 3.5e-22 109.0 123 52.0
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 4.5e-22 108.6 123 51.2
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 5.9e-22 108.2 126 54.0
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 1.0e-21 107.5 123 50.4
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.3e-21 106.3 126 53.2
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 2.3e-21 106.3 131 50.4
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 2.3e-21 106.3 124 51.6
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.9e-21 105.9 124 51.6
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.9e-21 105.9 131 46.6
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 3.9e-21 105.5 123 52.8
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 5.0e-21 105.1 128 49.2
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 5.0e-21 105.1 118 54.2
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.0e-21 105.1 118 52.5
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 5.0e-21 105.1 126 50.0
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 6.6e-21 104.8 118 53.4
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 8.6e-21 104.4 118 52.5
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 8.6e-21 104.4 118 52.5
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 1.9e-20 103.2 124 50.8
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.9e-20 103.2 113 53.1
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 3.3e-20 102.4 124 50.0
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 3.3e-20 102.4 125 50.4
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 3.3e-20 102.4 126 57.9
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 4.3e-20 102.1 134 48.5
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 5.6e-20 101.7 128 55.5
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 5.6e-20 101.7 123 69.9
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 9.5e-20 100.9 124 51.6
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 9.5e-20 100.9 131 47.3
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 9.5e-20 100.9 128 50.0
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 1.2e-19 100.5 112 53.6
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 1.6e-19 100.1 123 49.6
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 2.1e-19 99.8 120 50.8
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 2.1e-19 99.8 127 48.8
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 2.1e-19 99.8 118 51.7
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 2.1e-19 99.8 124 48.4
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 2.8e-19 99.4 125 48.0
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 2.8e-19 99.4 117 52.1
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 3.6e-19 99.0 121 56.2
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.6e-19 99.0 126 50.0
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 4.7e-19 98.6 121 57.0
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 4.7e-19 98.6 121 57.0
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 4.7e-19 98.6 121 57.0
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 4.7e-19 98.6 123 63.4
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 6.1e-19 98.2 125 57.6
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 6.1e-19 98.2 120 50.0
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 6.1e-19 98.2 120 50.0
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 6.1e-19 98.2 120 50.0
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 6.1e-19 98.2 126 49.2
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 6.1e-19 98.2 159 44.0
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 8.0e-19 97.8 119 48.7
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.0e-18 97.4 120 52.5
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 1.4e-18 97.1 149 43.0
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 1.4e-18 97.1 124 52.4
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.4e-18 97.1 127 50.4
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 1.8e-18 96.7 124 52.4
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 1.8e-18 96.7 120 49.2
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.8e-18 96.7 115 51.3
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.3e-18 96.3 126 49.2
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 2.3e-18 96.3 118 58.5
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 3.1e-18 95.9 125 47.2
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.1e-18 95.9 127 49.6
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 3.1e-18 95.9 125 47.2
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 3.1e-18 95.9 113 60.2
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 3.1e-18 95.9 118 57.6
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 4.0e-18 95.5 120 50.8
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 5.2e-18 95.1 117 49.6
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 5.2e-18 95.1 117 49.6
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 5.2e-18 95.1 125 56.0
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 5.2e-18 95.1 130 48.5
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 8.9e-18 94.4 119 55.5
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 8.9e-18 94.4 120 50.8
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 1.5e-17 93.6 120 48.3
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 2.0e-17 93.2 120 49.2
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 2.0e-17 93.2 120 49.2
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 4.4e-17 92.0 131 48.1
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 7.5e-17 91.3 108 51.9
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 1.3e-16 90.5 126 47.6
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 2.2e-16 89.7 120 46.7
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 4.9e-16 88.6 135 45.9
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.1e-15 87.4 112 48.2
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 1.9e-15 86.7 126 55.6
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 2.0e-14 83.2 124 41.9
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 7.8e-14 81.3 114 53.5
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 3.0e-13 79.3 122 44.3
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 2.5e-12 76.3 125 39.2
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 9.5e-12 74.3 127 40.2
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 3.6e-11 72.4 110 44.5
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 6.2e-11 71.6 47 83.0
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.1e-10 70.9 123 42.3
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 1.1e-10 70.9 92 43.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 1.4e-10 70.5 58 69.0
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 1.4e-10 70.5 110 44.5
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 1.8e-10 70.1 123 42.3
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 1.8e-10 70.1 123 45.5
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 3.1e-10 69.3 92 43.5
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 8.9e-10 67.8 113 39.8
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 8.9e-10 67.8 55 70.9
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 4.4e-09 65.5 86 43.0
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 5.8e-09 65.1 101 62.4
ECA238G3836 Erigeron canadensis HOM05D000407 ORTHO05D001717 5.8e-09 65.1 41 68.3
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.7e-08 63.5 89 39.3
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.9e-08 62.8 40 65.0
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.9e-08 62.8 40 65.0
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 3.7e-08 62.4 40 65.0
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.4e-07 59.7 195 29.7
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 3.2e-07 59.3 92 39.1
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.2e-07 59.3 112 40.2
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 4.1e-07 58.9 141 32.6
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.2e-06 57.4 84 38.1
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 1.2e-06 57.4 36 77.8
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 6.0e-06 55.1 40 60.0


User provided reference genes

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