Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 0.0e+00 1167.1 593 100.0
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 1.4e-238 829.7 611 68.9
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 8.9e-217 757.3 545 71.4
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 8.3e-215 750.7 591 64.1
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 5.6e-211 738.0 588 64.5
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.6e-189 666.8 507 65.7
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 2.3e-188 662.9 630 53.8
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 4.3e-187 658.7 635 52.9
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 2.1e-186 656.4 632 53.8
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 2.8e-186 656.0 651 52.4
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 4.9e-183 645.2 637 53.1
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 4.9e-183 645.2 596 55.0
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 4.2e-182 642.1 586 56.7
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.5e-181 639.0 594 56.6
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 4.6e-181 638.6 595 56.0
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 6.0e-181 638.3 608 54.6
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 1.0e-180 637.5 633 52.9
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 1.3e-180 637.1 626 52.7
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 3.0e-180 636.0 610 55.4
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 1.1e-179 634.0 608 54.4
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 1.9e-179 633.3 605 54.5
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 5.6e-179 631.7 629 52.1
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 1.6e-178 630.2 607 54.0
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 2.8e-178 629.4 613 53.0
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 4.8e-178 628.6 633 52.3
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 4.8e-178 628.6 638 52.4
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 1.1e-177 627.5 603 53.9
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.1e-177 627.5 641 51.3
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 1.1e-177 627.5 604 55.1
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 2.4e-177 626.3 634 51.6
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 4.0e-177 625.5 612 53.9
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 9.0e-177 624.4 607 53.0
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 1.2e-176 624.0 625 52.5
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 1.2e-176 624.0 640 52.2
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.2e-176 624.0 640 52.2
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 1.2e-176 624.0 634 51.6
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 1.5e-176 623.6 623 53.5
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 1.5e-176 623.6 635 52.1
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.5e-176 623.6 623 52.3
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 4.5e-176 622.1 644 51.9
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 7.6e-176 621.3 633 52.6
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.3e-175 620.5 642 51.6
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 3.8e-175 619.0 521 59.5
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 4.9e-175 618.6 601 53.6
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 8.4e-175 617.8 619 52.5
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 4.2e-174 615.5 643 50.4
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 2.1e-173 613.2 606 53.0
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 2.7e-173 612.8 598 53.8
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 2.3e-172 609.8 441 66.4
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 8.7e-172 607.8 635 52.0
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 1.5e-171 607.1 635 51.7
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 3.3e-171 605.9 601 52.7
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 4.3e-171 605.5 639 49.9
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 5.6e-171 605.1 596 53.0
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 9.6e-171 604.4 636 50.5
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 1.6e-170 603.6 512 58.4
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.1e-169 600.9 601 52.6
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 2.6e-168 596.3 601 52.4
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 9.3e-166 587.8 507 57.6
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 9.3e-166 587.8 484 59.3
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 1.3e-164 583.9 620 50.2
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 3.9e-164 582.4 587 50.9
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 1.4e-161 573.9 538 54.8
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 2.4e-161 573.2 537 56.2
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 9.0e-161 571.2 633 49.8
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 1.2e-160 570.9 523 56.6
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.2e-160 570.9 678 47.3
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 1.5e-160 570.5 442 61.8
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 5.8e-160 568.5 597 50.3
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 6.5e-159 565.1 582 52.9
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 4.6e-157 558.9 512 56.1
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 7.9e-157 558.1 609 49.9
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 3.0e-156 556.2 601 49.4
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 1.5e-155 553.9 612 49.5
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 2.2e-154 550.1 601 49.6
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 6.3e-154 548.5 618 48.7
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 3.1e-153 546.2 604 48.8
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 4.1e-153 545.8 611 48.0
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 5.3e-153 545.4 604 48.8
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 1.3e-151 540.8 604 48.5
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 3.2e-150 536.2 601 48.4
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 1.6e-149 533.9 597 48.7
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 2.3e-148 530.0 492 52.4
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.2e-144 517.7 663 45.4
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 5.5e-142 508.8 404 61.4
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.6e-141 506.1 392 60.2
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.6e-141 506.1 392 60.2
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 7.9e-141 505.0 518 51.0
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.9e-140 502.7 527 51.2
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 1.5e-139 500.7 502 50.4
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.1e-137 493.0 519 51.4
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.2e-136 491.1 473 53.1
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 2.2e-135 486.9 390 61.3
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 2.5e-134 483.4 390 60.0
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 9.4e-134 481.5 388 60.1
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 2.7e-133 479.9 611 44.4
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 2.6e-131 473.4 442 55.7
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 2.8e-130 469.9 471 49.7
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 1.2e-125 454.5 465 52.0
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 4.7e-125 452.6 438 54.3
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 1.4e-124 451.1 389 57.1
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 8.5e-119 431.8 508 44.1
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 2.7e-117 426.8 525 46.1
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.0e-116 424.9 501 44.9
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 6.8e-116 422.2 399 53.1
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 3.7e-114 416.4 478 44.1
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 1.2e-112 411.4 451 47.5
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 4.2e-110 402.9 341 57.2
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.7e-106 391.0 505 44.2
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 1.1e-105 388.3 448 46.9
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.8e-101 373.6 500 42.6
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 4.3e-94 349.7 264 62.5
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 4.9e-90 336.3 257 61.5
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.3e-87 328.2 314 55.4
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 3.9e-87 326.6 451 38.6
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.5e-86 324.7 386 44.8
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.1e-85 320.9 276 56.5
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 6.8e-84 315.8 509 38.1
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 2.2e-82 310.8 306 50.0
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 7.3e-70 269.2 197 63.5
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.3e-61 241.9 488 33.8
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 5.8e-51 206.5 162 61.1
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.5e-43 181.8 195 43.1
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 7.9e-40 169.5 250 41.2
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.5e-38 165.2 131 59.5
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 8.5e-34 149.4 244 41.4
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 2.1e-32 144.8 191 45.0
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.8e-31 141.7 122 54.1
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 8.2e-29 132.9 126 54.8
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 1.1e-28 132.5 133 52.6
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 2.4e-28 131.3 215 38.6
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.4e-27 127.5 127 53.5
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.9e-26 124.4 127 52.8
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 1.2e-19 102.4 94 55.3
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 1.1e-17 95.9 102 52.0
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 3.9e-15 87.4 91 51.6
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 9.4e-09 66.2 83 39.8
Lsat_1_v5_gn_4_170101 Lactuca sativa HOM05D001221 ORTHO05D006757 8.8e-07 59.7 80 41.2
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 5.7e-06 57.0 95 41.1
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 5.7e-06 57.0 92 41.3
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 9.7e-06 56.2 48 54.2


User provided reference genes

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