Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 2.0e-44 182.2 102 100.0
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 2.0e-44 182.2 102 100.0
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 2.0e-44 182.2 102 100.0
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 2.0e-44 182.2 102 100.0
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 2.0e-44 182.2 102 100.0
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 2.0e-44 182.2 102 100.0
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-44 181.8 101 100.0
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 2.6e-44 181.8 101 100.0
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-44 181.8 101 100.0
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 98.0
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 2.2e-43 178.7 102 96.1
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 2.9e-43 178.3 102 98.0
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 1.1e-42 176.4 102 95.1
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 2.5e-42 175.3 102 95.1
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 2.5e-42 175.3 102 95.1
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 4.2e-42 174.5 102 95.1
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 5.5e-42 174.1 102 96.1
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 9.4e-42 173.3 102 93.1
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 9.4e-42 173.3 102 93.1
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 9.4e-42 173.3 102 93.1
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.2e-41 172.9 102 93.1
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.2e-41 172.9 102 93.1
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.2e-41 172.9 102 93.1
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.2e-41 172.9 102 93.1
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 1.6e-41 172.6 102 92.2
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 2.1e-41 172.2 102 94.1
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 3.6e-41 171.4 100 94.0
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 1.0e-40 169.9 102 92.2
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 1.0e-40 169.9 102 92.2
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 1.0e-40 169.9 102 92.2
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 1.8e-40 169.1 102 90.2
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 5.2e-40 167.5 102 91.2
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.8e-40 166.8 102 90.2
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.5e-39 166.0 102 91.2
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 1.5e-39 166.0 102 90.2
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 2.6e-39 165.2 102 90.2
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 2.6e-39 165.2 102 91.2
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.6e-39 165.2 102 91.2
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.6e-39 165.2 102 91.2
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 89.2
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 89.2
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 89.2
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 89.2
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 89.2
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 89.2
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 89.2
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 89.2
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 89.2
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 89.2
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 89.2
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 2.2e-38 162.2 102 91.2
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 3.7e-38 161.4 102 88.2
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 2.4e-37 158.7 102 86.3
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 9.1e-37 156.8 102 87.3
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 9.1e-37 156.8 102 84.3
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 1.7e-35 152.5 98 82.7
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 2.2e-35 152.1 92 91.3
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 2.2e-35 152.1 92 91.3
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 5.0e-35 151.0 93 88.2
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 5.0e-35 151.0 93 88.2
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 6.5e-35 150.6 102 82.4
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.5e-35 150.2 102 82.4
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 1.9e-34 149.1 101 83.2
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.0e-32 141.7 95 83.2
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 5.7e-31 137.5 91 84.6
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 1.7e-30 136.0 95 81.1
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 4.8e-30 134.4 82 86.6
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 2.4e-29 132.1 102 79.4
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 2.4e-29 132.1 102 79.4
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 5.0e-27 124.4 102 76.5
HanXRQChr09g0246681 Helianthus annuus HOM05D001200 ORTHO05D009778 9.5e-26 120.2 101 75.2
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 1.6e-25 119.4 66 97.0
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 1.6e-25 119.4 102 74.5
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 8.0e-25 117.1 66 95.5
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 1.8e-24 115.9 66 93.9
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 4.0e-24 114.8 62 98.4
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 3.4e-23 111.7 104 68.3
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 1.4e-21 106.3 67 82.1
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 2.4e-21 105.5 65 84.6
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 2.0e-20 102.4 67 82.1
PGSC0003DMG400026713 Solanum tuberosum HOM05D001200 ORTHO05D009778 2.0e-20 102.4 74 79.7
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.7e-20 102.1 75 78.7
Nn3g19076 Nelumbo nucifera HOM05D001200 ORTHO05D009778 4.5e-20 101.3 76 78.9
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 5.9e-20 100.9 77 72.7
HanXRQChr08g0231311 Helianthus annuus HOM05D001200 ORTHO05D009778 5.9e-20 100.9 59 94.9
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 1.7e-19 99.4 59 84.7
Lsat_1_v5_gn_6_54101 Lactuca sativa HOM05D001200 ORTHO05D009778 5.0e-19 97.8 75 78.7
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 8.6e-19 97.1 54 94.4
TPR.G17270 Trifolium pratense HOM05D001200 ORTHO05D009778 1.9e-18 95.9 62 87.1
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 2.1e-17 92.4 73 69.9
Nn3g20216 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.4e-16 89.7 56 87.5
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 1.8e-16 89.4 52 88.5
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 1.8e-16 89.4 52 88.5
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 4.0e-16 88.2 96 60.4
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 6.8e-16 87.4 51 88.2
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 2.0e-15 85.9 48 100.0
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 4.4e-15 84.7 53 86.8
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 7.5e-15 84.0 51 86.3
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 7.5e-15 84.0 77 67.5
Eucgr.L00013 Eucalyptus grandis HOM05D001200 ORTHO05D009778 9.8e-15 83.6 102 56.9
SMO086G0019 Selaginella moellendorffii HOM05D001200 ORTHO05D009778 6.0e-12 74.3 100 49.0
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 7.8e-12 73.9 52 78.8
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 3.3e-10 68.6 41 78.0
BraSC25t45910Z Brassica rapa HOM05D001200 ORTHO05D009778 2.0e-07 59.3 41 78.0
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 2.9e-06 55.5 89 41.6
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 2.9e-06 55.5 89 41.6
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 2.9e-06 55.5 89 41.6
A05p21340 Brassica napus HOM05D000001 ORTHO05D024436 6.4e-06 54.3 43 60.5


User provided reference genes

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