Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 3.2e-170 601.7 307 100.0
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 4.4e-167 591.3 323 95.0
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 4.4e-167 591.3 323 95.0
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 4.4e-167 591.3 323 95.0
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 4.4e-167 591.3 323 95.0
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-151 539.7 307 92.2
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 6.4e-134 481.1 268 93.7
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 1.6e-132 476.5 307 83.7
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 9.5e-130 467.2 320 77.2
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 1.4e-128 463.4 322 77.3
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 4.1e-125 451.8 320 74.4
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 3.9e-123 445.3 326 73.9
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 3.9e-123 445.3 326 73.9
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 3.9e-123 445.3 326 73.9
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 3.9e-123 445.3 326 73.9
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 5.6e-122 441.4 326 73.3
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 6.2e-121 438.0 321 73.2
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.1e-121 437.6 323 71.5
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.1e-121 437.6 323 71.5
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 2.6e-119 432.6 320 71.9
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 1.7e-118 429.9 321 69.8
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 1.7e-118 429.9 321 69.8
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 6.4e-118 427.9 319 71.5
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 6.4e-118 427.9 319 71.5
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 1.7e-115 419.9 324 73.1
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 1.7e-115 419.9 321 68.2
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 9.5e-114 414.1 321 68.5
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 6.8e-112 407.9 338 68.0
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-110 401.7 326 65.6
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-110 401.7 326 65.6
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-110 401.7 326 65.6
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-110 401.7 326 65.6
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-110 401.7 326 65.6
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 4.9e-110 401.7 326 65.6
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 4.9e-110 401.7 326 65.6
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 4.9e-110 401.7 326 65.6
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 4.9e-110 401.7 326 65.6
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 6.4e-110 401.4 326 65.6
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 6.4e-110 401.4 326 65.6
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 6.4e-110 401.4 322 66.1
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 2.4e-109 399.4 324 65.4
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 3.2e-109 399.1 326 65.3
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-107 393.7 325 64.6
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 5.6e-106 388.3 323 64.4
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.4e-102 374.8 277 69.7
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 1.1e-101 374.0 317 63.1
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 9.3e-101 370.9 274 74.5
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.1e-99 365.2 323 61.6
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.3e-98 362.5 284 68.3
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 7.6e-95 351.3 295 64.1
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 8.4e-94 347.8 302 62.6
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 4.5e-87 325.5 182 94.0
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 3.0e-83 312.8 276 61.6
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 5.5e-77 292.0 276 57.6
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.5e-74 283.9 267 58.1
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 2.5e-74 283.1 247 61.1
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 2.8e-73 279.6 222 68.5
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 1.8e-72 276.9 198 77.3
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.0e-70 271.2 274 58.0
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 8.2e-65 251.5 218 65.6
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 5.3e-64 248.8 177 78.0
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 6.9e-64 248.4 128 100.0
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.7e-62 243.8 273 49.5
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.7e-62 243.8 273 49.5
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.7e-62 243.8 273 49.5
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.7e-62 243.8 273 49.5
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.7e-62 243.8 273 49.5
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 3.8e-62 242.7 189 70.4
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 9.4e-61 238.0 173 72.8
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 1.4e-59 234.2 208 63.0
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 8.8e-59 231.5 185 68.6
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.0e-58 230.3 170 75.3
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 5.7e-58 228.8 307 44.6
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.1e-56 224.6 252 51.6
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 4.1e-56 222.6 175 70.3
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 4.1e-56 222.6 175 70.3
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 1.3e-54 217.6 147 75.5
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.9e-54 216.5 233 55.4
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 6.5e-54 215.3 181 66.3
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 7.4e-50 201.8 180 63.9
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 2.0e-47 193.7 171 63.7
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 2.0e-47 193.7 128 82.0
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 3.8e-46 189.5 286 40.6
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 1.1e-45 188.0 166 63.3
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 3.6e-44 183.0 180 61.1
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.8e-43 180.6 257 43.6
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 7.5e-42 175.3 112 85.7
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 9.7e-42 174.9 129 65.1
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.4e-40 170.2 79 100.0
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.7e-39 165.2 106 73.6
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.2e-38 163.7 112 68.8
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.1e-37 161.4 91 89.0
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 1.1e-37 161.4 294 37.1
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 3.2e-37 159.8 77 90.9
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 3.2e-37 159.8 77 90.9
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 4.2e-37 159.5 79 87.3
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-36 157.5 103 72.8
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 2.3e-35 153.7 137 56.9
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.3e-35 153.7 103 70.9
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.8e-35 152.1 78 85.9
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.3e-33 147.9 185 53.5
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 3.7e-33 146.4 95 75.8
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.8e-32 144.1 68 100.0
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 2.4e-32 143.7 93 86.0
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 4.1e-32 142.9 234 46.2
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 7.0e-32 142.1 122 60.7
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 9.1e-32 141.7 139 56.8
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.2e-31 141.4 147 55.8
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 2.2e-30 137.1 170 48.8
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.9e-29 134.0 192 43.2
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 2.5e-29 133.7 110 66.4
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 2.5e-29 133.7 274 39.8
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 5.5e-29 132.5 80 80.0
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.7e-28 129.4 193 42.0
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 9.8e-26 121.7 97 66.0
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.7e-22 110.9 81 64.2
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 6.6e-22 109.0 102 59.8
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 8.6e-22 108.6 59 79.7
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 2.5e-21 107.1 53 92.5
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 7.3e-21 105.5 66 78.8
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.2e-20 104.8 81 60.5
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.6e-20 104.4 53 90.6
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.6e-20 103.2 66 84.8
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.8e-19 100.9 70 67.1
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 3.4e-18 96.7 93 65.6
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.7e-17 94.4 85 56.5
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.2e-17 94.0 70 62.9
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.1e-16 91.7 85 55.3
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.2e-16 90.1 85 63.5
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 4.6e-15 86.3 41 82.9
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 5.9e-15 85.9 76 64.5
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.7e-14 84.3 67 62.7
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 2.3e-14 84.0 84 63.1
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 1.7e-09 67.8 52 67.3
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.9e-09 67.0 48 79.2
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 6.4e-09 65.9 43 81.4
Nitab4.5_0007979g0090 Nicotiana tabacum HOM05D005034 ORTHO05D006234 8.3e-09 65.5 101 41.6
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 1.4e-08 64.7 46 69.6
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.7e-07 60.5 40 75.0
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 7.8e-07 58.9 56 57.1
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 5.0e-06 56.2 57 50.9


User provided reference genes

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