Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 2.8e-126 455.3 228 100.0
HanXRQChr05g0152391 Helianthus annuus HOM05D001750 ORTHO05D001825 2.8e-126 455.3 228 100.0
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 2.8e-126 455.3 228 100.0
HanXRQChr11g0323701 Helianthus annuus HOM05D001750 ORTHO05D001825 2.8e-126 455.3 228 100.0
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 2.8e-126 455.3 228 100.0
HanXRQChr01g0020111 Helianthus annuus HOM05D001750 ORTHO05D001825 8.7e-96 354.0 172 100.0
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 7.6e-92 340.9 228 77.2
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 6.7e-88 327.8 227 72.7
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 8.4e-83 310.8 228 68.4
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 8.4e-83 310.8 228 68.4
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 8.4e-83 310.8 228 68.4
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 8.4e-83 310.8 228 68.4
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.1e-82 310.5 230 70.4
Solyc00g500195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 9.3e-82 307.4 221 69.2
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 3.5e-81 305.4 228 67.5
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 2.5e-79 299.3 226 68.1
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 9.4e-74 280.8 138 100.0
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 2.1e-73 279.6 202 68.3
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 2.3e-72 276.2 220 67.3
EL10Ac5g11664 Beta vulgaris HOM05D001750 ORTHO05D001825 1.1e-71 273.9 210 66.2
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.1e-71 273.9 216 66.2
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.1e-71 273.9 216 66.2
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 2.0e-71 273.1 214 63.6
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 1.3e-70 270.4 236 59.3
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.8e-70 269.2 216 65.3
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 8.2e-70 267.7 228 61.4
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 5.3e-69 265.0 228 61.8
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 5.3e-69 265.0 228 61.8
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 5.3e-69 265.0 228 61.8
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 1.2e-68 263.8 231 59.7
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 3.4e-68 262.3 228 61.0
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 3.8e-67 258.8 206 61.7
Gohir.A12G084295 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.7e-65 251.9 212 62.7
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 1.8e-64 250.0 215 59.1
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.1e-64 248.4 202 63.9
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 8.8e-64 247.7 227 56.8
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 8.8e-64 247.7 227 56.8
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 2.6e-60 236.1 206 58.3
HanXRQChr13g0413591 Helianthus annuus HOM05D001750 ORTHO05D001825 9.7e-55 217.6 106 100.0
arahy.Tifrunner.gnm1.ann1.4DVC71 Arachis hypogaea HOM05D001750 ORTHO05D001825 2.2e-54 216.5 204 53.4
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 2.5e-50 203.0 177 59.3
EL10Ac1g00371 Beta vulgaris HOM05D001750 ORTHO05D001825 1.6e-49 200.3 156 64.1
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 1.5e-47 193.7 229 51.1
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 2.2e-38 163.3 151 57.6
SEGI_35420 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 4.9e-38 162.2 203 45.8
Lalb_Chr16g0388591 Lupinus albus HOM05D001750 ORTHO05D001825 5.4e-37 158.7 122 65.6
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 9.1e-37 157.9 158 53.2
BolSC35t60699H Brassica oleracea HOM05D001750 ORTHO05D001825 2.1e-33 146.7 121 62.8
Gohir.A08G055950 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.8e-33 146.4 110 67.3
Solyc01g017110.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.7e-33 145.6 150 50.0
HanXRQChr17g0557811 Helianthus annuus HOM05D001750 ORTHO05D001825 6.1e-33 145.2 76 93.4
Gohir.A04G058952 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.0e-32 144.4 110 66.4
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 1.2e-31 141.0 114 63.2
Lj9P89T20 Lonicera japonica HOM05D001750 ORTHO05D001825 1.2e-31 141.0 96 71.9
Gorai.005G170400 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.8e-24 117.1 98 63.3
Prupe.2G145900 Prunus persica HOM05D001750 ORTHO05D001825 1.8e-24 117.1 92 68.5
Gohir.D02G151844 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.8e-23 112.1 92 62.0
Solyc11g044643.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.0e-19 99.8 114 48.2
Nn1g00556 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.5e-18 97.4 61 73.8
SMO086G0048 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 2.6e-15 86.7 198 33.8
Solyc05g013090.3 Solanum lycopersicum HOM05D001750 ORTHO05D001825 7.5e-15 85.1 100 45.0
RcHm_v2.0_CPg0501681 Rosa chinensis HOM05D001750 ORTHO05D001825 2.2e-14 83.6 63 65.1
Solyc05g013080.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.9e-14 82.4 60 61.7
BolC2t10591H Brassica oleracea HOM05D001750 ORTHO05D001825 5.4e-13 79.0 71 59.2
arahy.Tifrunner.gnm1.ann1.X5PJ61 Arachis hypogaea HOM05D000445 ORTHO05D000314 1.7e-11 73.9 91 45.1
TPR.G34249 Trifolium pratense HOM05D001750 ORTHO05D048894 5.6e-10 68.9 68 54.4
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.5e-07 60.8 44 65.9
Glyma.15G246000 Glycine max HOM05D001750 ORTHO05D001825 2.9e-06 56.6 67 50.7
Glyma.06G151800 Glycine max HOM05D001750 ORTHO05D001825 3.7e-06 56.2 70 50.0


User provided reference genes

Program Settings