Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 5.2e-232 807.4 411 100.0
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 1.8e-200 702.6 457 82.3
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 6.0e-180 634.4 466 73.0
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 1.8e-168 596.3 421 75.5
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 4.2e-149 531.9 469 61.4
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 5.5e-149 531.6 472 62.3
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 2.7e-148 529.3 467 61.2
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 2.3e-147 526.2 422 66.4
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 5.1e-147 525.0 471 61.6
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 6.7e-147 524.6 452 64.2
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 9.7e-146 520.8 445 63.8
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 1.7e-145 520.0 461 62.3
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 4.8e-145 518.5 464 61.2
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 8.2e-145 517.7 462 61.9
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 1.4e-144 516.9 486 60.3
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 1.8e-144 516.5 460 62.2
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 4.1e-144 515.4 464 61.2
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 4.1e-144 515.4 464 61.4
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 4.1e-144 515.4 462 61.5
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 5.3e-144 515.0 464 61.4
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 5.3e-144 515.0 466 60.7
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 5.3e-144 515.0 460 61.1
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 9.1e-144 514.2 449 62.4
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 5.9e-143 511.5 465 60.6
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 1.0e-142 510.8 447 61.1
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 1.0e-142 510.8 442 62.7
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 1.3e-142 510.4 466 59.7
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 1.1e-141 507.3 451 61.9
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 1.9e-141 506.5 470 58.3
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 2.5e-141 506.1 459 60.8
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 4.2e-141 505.4 466 60.7
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 9.4e-141 504.2 470 58.5
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 9.4e-141 504.2 469 59.3
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 2.1e-140 503.1 437 62.7
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 2.1e-140 503.1 469 59.1
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 3.6e-140 502.3 452 60.8
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 4.7e-140 501.9 462 59.5
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 7.9e-140 501.1 460 59.3
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 1.0e-139 500.7 470 58.9
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 1.4e-139 500.4 454 58.8
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 3.0e-139 499.2 456 60.1
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 3.9e-139 498.8 459 59.0
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 5.1e-139 498.4 437 62.0
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 5.1e-139 498.4 465 59.8
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 6.7e-139 498.0 439 63.1
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.1e-138 497.3 437 61.3
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 1.5e-138 496.9 455 60.7
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 7.4e-138 494.6 467 58.7
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 1.8e-136 490.0 468 58.1
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 4.1e-136 488.8 471 57.5
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 4.1e-136 488.8 449 60.6
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 1.2e-135 487.3 465 58.1
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 2.0e-135 486.5 479 57.4
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 2.0e-135 486.5 454 59.3
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 2.6e-135 486.1 470 58.3
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 3.5e-135 485.7 465 58.1
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 4.5e-135 485.3 498 54.8
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 5.9e-135 485.0 464 58.2
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 5.9e-135 485.0 464 58.4
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 1.0e-134 484.2 464 58.8
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 1.0e-134 484.2 464 58.8
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 1.3e-134 483.8 464 57.3
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 2.2e-134 483.0 454 58.4
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 3.8e-134 482.3 467 57.8
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 1.5e-133 480.3 464 56.9
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 1.5e-133 480.3 454 58.6
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 1.9e-133 479.9 464 57.1
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 5.5e-133 478.4 462 57.8
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 1.2e-132 477.2 552 50.0
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 3.6e-132 475.7 439 58.3
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 2.3e-131 473.0 429 60.4
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 7.4e-130 468.0 437 60.4
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 6.3e-129 464.9 311 75.9
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.6e-127 460.3 445 56.9
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 7.7e-127 458.0 420 61.0
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 1.0e-126 457.6 440 59.1
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 4.7e-124 448.7 426 59.4
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.8e-123 446.8 325 70.2
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 1.8e-123 446.8 451 55.9
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 6.8e-123 444.9 435 57.2
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 3.4e-122 442.6 442 54.8
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.7e-121 440.3 299 74.6
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 7.0e-120 434.9 471 52.9
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 9.1e-120 434.5 467 51.4
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 1.0e-118 431.0 531 48.6
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 1.5e-117 427.2 328 65.2
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 1.9e-117 426.8 457 53.2
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 1.4e-115 420.6 434 55.8
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 1.4e-115 420.6 343 65.0
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 2.6e-114 416.4 415 56.4
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 1.1e-112 411.0 409 58.4
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 9.1e-112 407.9 390 59.0
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 3.3e-109 399.4 482 49.8
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 9.5e-109 397.9 317 63.1
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.1e-108 396.7 415 55.7
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 4.9e-105 385.6 438 52.1
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 5.9e-103 378.6 371 56.9
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 3.9e-102 375.9 266 72.9
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 3.4e-98 362.8 478 49.8
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 9.2e-96 354.8 357 56.6
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 1.2e-95 354.4 261 68.6
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 6.6e-94 348.6 468 48.7
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 4.0e-91 339.3 394 50.8
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 2.9e-89 333.2 443 43.1
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 1.1e-88 331.3 459 42.5
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.5e-85 320.9 468 41.7
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 3.1e-83 313.2 283 60.4
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 3.6e-76 289.7 423 44.4
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 2.6e-66 256.9 275 53.1
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 4.3e-61 239.6 309 46.3
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 8.1e-60 235.3 399 38.8
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 2.4e-59 233.8 352 40.9
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 1.7e-57 227.6 302 44.4
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 8.4e-57 225.3 243 53.9
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 2.1e-55 220.7 373 42.4
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 2.5e-53 213.8 224 49.1
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.3e-28 131.7 151 49.7
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 1.4e-27 128.3 88 72.7
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 6.9e-27 125.9 67 89.6
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.2e-26 125.2 174 45.4
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 1.8e-22 111.3 438 26.5
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 1.1e-21 108.6 105 59.0
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 2.2e-20 104.4 329 29.2
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 2.4e-19 100.9 164 43.9
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.2e-17 94.4 145 42.8
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 5.7e-13 79.7 44 84.1
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 8.2e-12 75.9 175 30.9
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 5.3e-11 73.2 111 40.5
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 5.9e-10 69.7 56 62.5
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.9e-10 69.7 58 62.1
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 3.2e-08 63.9 58 55.2


User provided reference genes

Program Settings