Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0322701 Helianthus annuus HOM05D002903 ORTHO05D003066 2.8e-129 465.3 237 100.0
Lsat_1_v5_gn_0_33040 Lactuca sativa HOM05D002903 ORTHO05D003066 6.4e-41 171.8 224 48.2
HanXRQChr11g0322691 Helianthus annuus HOM05D002903 ORTHO05D003066 1.1e-40 171.0 89 87.6
ECA232G2707 Erigeron canadensis HOM05D002903 ORTHO05D003066 1.2e-36 157.5 164 53.0
Lsat_1_v5_gn_0_1360 Lactuca sativa HOM05D000094 ORTHO05D001056 1.9e-29 133.7 155 52.3
Dinv24393 Davidia involucrata HOM05D002903 ORTHO05D003066 4.4e-18 95.9 281 33.1
Haze_25272 Corylus avellana HOM05D002903 ORTHO05D003066 2.9e-17 93.2 246 32.1
Sopen05g034770 Solanum pennellii HOM05D002903 ORTHO05D003066 4.9e-17 92.4 169 38.5
Haze_25271 Corylus avellana HOM05D002903 ORTHO05D003066 6.4e-17 92.0 229 33.2
Haze_25273 Corylus avellana HOM05D002903 ORTHO05D003066 6.4e-17 92.0 229 33.2
Solyc05g056380.3 Solanum lycopersicum HOM05D002903 ORTHO05D003066 6.4e-17 92.0 169 38.5
Cfa002912 Carpinus fangiana HOM05D002903 ORTHO05D003066 1.1e-16 91.3 242 30.6
HanXRQChr13g0387221 Helianthus annuus HOM05D002903 ORTHO05D003066 7.1e-16 88.6 225 35.1
Peaxi162Scf00353g00026 Petunia axillaris HOM05D002903 ORTHO05D003066 1.2e-15 87.8 210 34.3
QL10p043057 Quercus lobata HOM05D002903 ORTHO05D003066 2.3e-14 83.6 192 36.5
PGSC0003DMG400023449 Solanum tuberosum HOM05D002903 ORTHO05D003066 3.9e-14 82.8 157 38.2
Dinv19537 Davidia involucrata HOM05D002903 ORTHO05D003066 8.7e-14 81.6 197 36.5
Nitab4.5_0000496g0210 Nicotiana tabacum HOM05D002903 ORTHO05D003066 2.5e-13 80.1 152 38.2
CiPaw.04G081400 Carya illinoinensis HOM05D002903 ORTHO05D003066 3.3e-13 79.7 207 31.9
Gohir.D04G032100 Gossypium hirsutum HOM05D002903 ORTHO05D003066 4.3e-13 79.3 163 36.8
Gorai.012G036500 Gossypium raimondii HOM05D002903 ORTHO05D003066 5.6e-13 79.0 163 36.8
TAR625G1102 Trochodendron aralioides HOM05D002903 ORTHO05D003066 7.3e-13 78.6 227 30.8
COL.COLO4_35772 Corchorus olitorius HOM05D002903 ORTHO05D003066 1.3e-12 77.8 196 36.2
CAN.G1156.31 Capsicum annuum HOM05D013549 ORTHO05D003066 3.6e-12 76.3 109 42.2
CiPaw.03G119900 Carya illinoinensis HOM05D002903 ORTHO05D003066 3.6e-12 76.3 226 30.1
COL.COLO4_38160 Corchorus olitorius HOM05D002903 ORTHO05D003066 1.8e-11 73.9 184 37.0
Gohir.A05G383200 Gossypium hirsutum HOM05D002903 ORTHO05D003066 1.8e-11 73.9 163 35.6
GSVIVG01022345001 Vitis vinifera HOM05D002903 ORTHO05D003066 1.8e-11 73.9 213 30.0
MBI03_g20844_MAGBIO Magnolia biondii HOM05D002903 ORTHO05D003066 2.4e-11 73.6 180 32.8
Thecc.01G134700 Theobroma cacao HOM05D002903 ORTHO05D003066 2.4e-11 73.6 185 37.3
DCAR_001203 Daucus carota HOM05D002903 ORTHO05D003066 4.0e-11 72.8 210 32.4
Duzib187G0480 Durio zibethinus HOM05D002903 ORTHO05D003066 4.0e-11 72.8 187 35.3
Glyma.13G036100 Glycine max HOM05D002903 ORTHO05D003066 5.3e-11 72.4 140 37.9
Nn1g06302 Nelumbo nucifera HOM05D002903 ORTHO05D003066 5.3e-11 72.4 187 33.2
Prupe.4G272900 Prunus persica HOM05D002903 ORTHO05D003066 5.3e-11 72.4 218 32.6
Duzib041G0628 Durio zibethinus HOM05D002903 ORTHO05D003066 6.9e-11 72.0 163 32.5
Actinidia03429 Actinidia chinensis HOM05D002903 ORTHO05D003066 1.2e-10 71.2 196 30.1
Glyma.14G158800 Glycine max HOM05D002903 ORTHO05D003066 1.2e-10 71.2 136 36.0
Thecc.08G137400 Theobroma cacao HOM05D002903 ORTHO05D003066 1.5e-10 70.9 168 32.1
Actinidia20071 Actinidia chinensis HOM05D002903 ORTHO05D003066 2.0e-10 70.5 177 32.8
FAN20G1459 Fragaria x ananassa HOM05D002903 ORTHO05D003066 2.0e-10 70.5 176 34.1
Manes.18G084700 Manihot esculenta HOM05D002903 ORTHO05D003066 2.0e-10 70.5 117 36.8
Oeu058296.1 Olea europaea HOM05D002903 ORTHO05D003066 2.0e-10 70.5 223 31.8
Oeu004513.1 Olea europaea HOM05D002903 ORTHO05D003066 2.6e-10 70.1 214 32.2
Duzib093G1863 Durio zibethinus HOM05D002903 ORTHO05D003066 3.4e-10 69.7 191 30.4
Gohir.D02G076000 Gossypium hirsutum HOM05D002903 ORTHO05D003066 3.4e-10 69.7 132 37.1
Gorai.005G085300 Gossypium raimondii HOM05D002903 ORTHO05D003066 3.4e-10 69.7 132 37.1
Aqoxy5G02305 Aquilegia oxysepala HOM05D002903 ORTHO05D003066 4.4e-10 69.3 213 29.1
BcaB07g32128 Brassica carinata HOM05D002903 ORTHO05D003066 4.4e-10 69.3 196 28.6
Gorai.013G109100 Gossypium raimondii HOM05D002903 ORTHO05D003066 4.4e-10 69.3 183 30.6
Nitab4.5_0006582g0050 Nicotiana tabacum HOM05D002903 ORTHO05D003066 5.8e-10 68.9 172 33.7
RcHm_v2.0_Chr6g0278041 Rosa chinensis HOM05D002903 ORTHO05D003066 5.8e-10 68.9 172 33.7
BcaC05g26046 Brassica carinata HOM05D002903 ORTHO05D003066 7.6e-10 68.6 134 35.8
Rhsim08G0001600 Rhododendron simsii HOM05D002903 ORTHO05D003066 7.6e-10 68.6 146 34.9
C05p20270 Brassica napus HOM05D000744 ORTHO05D000332 9.9e-10 68.2 129 37.2
BolC5t30721H Brassica oleracea HOM05D002903 ORTHO05D003066 9.9e-10 68.2 129 37.2
FvH4_2g15290 Fragaria vesca HOM05D002903 ORTHO05D003066 9.9e-10 68.2 148 35.1
Gohir.A02G112000 Gossypium hirsutum HOM05D002903 ORTHO05D003066 9.9e-10 68.2 178 30.9
Gohir.D03G062500 Gossypium hirsutum HOM05D002903 ORTHO05D003066 9.9e-10 68.2 183 30.1
Manes.02G172300 Manihot esculenta HOM05D002903 ORTHO05D003066 1.3e-09 67.8 132 33.3
Cc10_g13350 Coffea canephora HOM05D002903 ORTHO05D003066 1.7e-09 67.4 191 30.9
Nn5g28499 Nelumbo nucifera HOM05D002903 ORTHO05D003066 1.7e-09 67.4 183 30.6
Actinidia12224 Actinidia chinensis HOM05D002903 ORTHO05D003066 2.2e-09 67.0 225 29.8
A06p17430 Brassica napus HOM05D000744 ORTHO05D000332 2.2e-09 67.0 145 33.1
CSS0044801 Camellia sinensis var. sinensis HOM05D002903 ORTHO05D003066 2.2e-09 67.0 147 34.0
Hma1.2p1_0539F.1_g174540 Hydrangea macrophylla HOM05D002903 ORTHO05D003066 2.2e-09 67.0 219 29.2
BraA06t24841Z Brassica rapa HOM05D002903 ORTHO05D003066 3.8e-09 66.2 120 36.7
FAN19G0913 Fragaria x ananassa HOM05D002903 ORTHO05D003066 3.8e-09 66.2 189 25.4
FAN24G3523 Fragaria x ananassa HOM05D002903 ORTHO05D003066 3.8e-09 66.2 148 34.5
Gohir.A02G069300 Gossypium hirsutum HOM05D002903 ORTHO05D003066 3.8e-09 66.2 124 38.7
SGA_v2.0_scaffold20G09019 Striga asiatica HOM05D002903 ORTHO05D003066 4.9e-09 65.9 121 33.9
Atru.chr4.939 Acer truncatum HOM05D002903 ORTHO05D003066 6.4e-09 65.5 169 33.7
FAN15G2216 Fragaria x ananassa HOM05D002903 ORTHO05D003066 6.4e-09 65.5 176 33.0
FAN27G1654 Fragaria x ananassa HOM05D002903 ORTHO05D003066 6.4e-09 65.5 168 30.4
Thecc.06G085300 Theobroma cacao HOM05D002903 ORTHO05D003066 6.4e-09 65.5 107 46.7
Thecc.06G085900 Theobroma cacao HOM05D002903 ORTHO05D003066 6.4e-09 65.5 107 46.7
QL09p029695 Quercus lobata HOM05D002903 ORTHO05D003066 8.4e-09 65.1 183 29.0
CSS0044741 Camellia sinensis var. sinensis HOM05D002903 ORTHO05D003066 1.1e-08 64.7 209 29.2
Cpa.g.sc42.173 Carica papaya HOM05D002903 ORTHO05D003066 1.1e-08 64.7 103 40.8
Lalb_Chr10g0101441 Lupinus albus HOM05D002903 ORTHO05D003066 1.4e-08 64.3 147 32.7
Haze_17666 Corylus avellana HOM05D002903 ORTHO05D003066 1.9e-08 63.9 170 28.8
Gohir.D05G241400 Gossypium hirsutum HOM05D002903 ORTHO05D003066 1.9e-08 63.9 184 29.9
Sp1g18940 Schrenkiella parvula HOM05D002903 ORTHO05D003066 1.9e-08 63.9 122 32.0
Thecc.06G085500 Theobroma cacao HOM05D002903 ORTHO05D003066 1.9e-08 63.9 112 45.5
Gorai.009G250800 Gossypium raimondii HOM05D002903 ORTHO05D003066 2.4e-08 63.5 184 29.9
Sopen06g019940 Solanum pennellii HOM05D002903 ORTHO05D003066 2.4e-08 63.5 166 30.1
Phvul.001G065100 Phaseolus vulgaris HOM05D002903 ORTHO05D003066 3.2e-08 63.2 162 29.6
Potri.007G104500 Populus trichocarpa HOM05D002903 ORTHO05D003066 3.2e-08 63.2 178 28.7
VMungo1309G2413 Vigna mungo HOM05D002903 ORTHO05D003066 3.2e-08 63.2 212 29.2
BolC6t40142H Brassica oleracea HOM05D002903 ORTHO05D003066 4.2e-08 62.8 204 28.9
Carub.0001s2080 Capsella rubella HOM05D002903 ORTHO05D003066 4.2e-08 62.8 130 32.3
DCAR_014329 Daucus carota HOM05D002903 ORTHO05D003066 4.2e-08 62.8 248 27.4
Gohir.A05G240200 Gossypium hirsutum HOM05D002903 ORTHO05D003066 4.2e-08 62.8 185 29.7
RcHm_v2.0_Chr2g0121941 Rosa chinensis HOM05D002903 ORTHO05D003066 4.2e-08 62.8 186 27.4
VMungo0647G0886 Vigna mungo HOM05D002903 ORTHO05D003066 4.2e-08 62.8 165 30.3
Atru.chr13.1637 Acer truncatum HOM05D002903 ORTHO05D003066 5.4e-08 62.4 168 36.3
FvH4_1g24530 Fragaria vesca HOM05D002903 ORTHO05D003066 5.4e-08 62.4 189 25.4
TWI79G0835 Tripterygium wilfordii HOM05D000001 ORTHO05D010162 5.4e-08 62.4 202 35.1
Dinv25773 Davidia involucrata HOM05D002903 ORTHO05D003066 7.1e-08 62.0 169 30.8
FAN28G2835 Fragaria x ananassa HOM05D002903 ORTHO05D003066 7.1e-08 62.0 187 26.7
Potri.002G075400 Populus trichocarpa HOM05D002903 ORTHO05D003066 7.1e-08 62.0 169 29.6
CARHR070490 Cardamine hirsuta HOM05D002903 ORTHO05D003066 9.3e-08 61.6 178 26.4
Eucgr.F02770 Eucalyptus grandis HOM05D002903 ORTHO05D003066 9.3e-08 61.6 187 29.9
Sabra02G0058900 Salix brachista HOM05D002903 ORTHO05D003066 9.3e-08 61.6 176 27.3
C06p51200 Brassica napus HOM05D000744 ORTHO05D000332 1.6e-07 60.8 128 35.9
Cfa018400 Carpinus fangiana HOM05D002903 ORTHO05D003066 1.6e-07 60.8 159 29.6
PGR042G1875 Punica granatum HOM05D002903 ORTHO05D003066 1.6e-07 60.8 156 30.1
Sed0005775 Sechium edule HOM05D002903 ORTHO05D003066 1.6e-07 60.8 195 30.3
Sed0027661 Sechium edule HOM05D002903 ORTHO05D003066 1.6e-07 60.8 196 28.6
Thhalv10019082m.g Eutrema salsugineum HOM05D002903 ORTHO05D003066 2.1e-07 60.5 133 34.6
Actinidia06611 Actinidia chinensis HOM05D002903 ORTHO05D003066 2.7e-07 60.1 170 31.8
Cpa.g.sc26.66 Carica papaya HOM05D002903 ORTHO05D003066 2.7e-07 60.1 199 26.6
Nitab4.5_0008281g0010 Nicotiana tabacum HOM05D002903 ORTHO05D003066 2.7e-07 60.1 160 32.5
Solyc06g059860.3 Solanum lycopersicum HOM05D002903 ORTHO05D003066 2.7e-07 60.1 196 27.0
THA.LOC104813698 Tarenaya hassleriana HOM05D002903 ORTHO05D003066 2.7e-07 60.1 134 29.9
AL1G34490 Arabidopsis lyrata HOM05D002903 ORTHO05D003066 3.5e-07 59.7 136 34.6
ClCG08G006250 Citrullus lanatus HOM05D002903 ORTHO05D003066 3.5e-07 59.7 210 28.6
FAN23G0840 Fragaria x ananassa HOM05D002903 ORTHO05D003066 3.5e-07 59.7 161 30.4
HanXRQChr10g0309091 Helianthus annuus HOM05D002903 ORTHO05D003066 3.5e-07 59.7 199 28.6
Aqoxy6G00279 Aquilegia oxysepala HOM05D002903 ORTHO05D003066 4.6e-07 59.3 215 26.0
BcaC08g47201 Brassica carinata HOM05D002903 ORTHO05D003066 4.6e-07 59.3 134 29.9
FAN26G0773 Fragaria x ananassa HOM05D002903 ORTHO05D003066 4.6e-07 59.3 208 25.5
Lj1g0027406 Lotus japonicus HOM05D002903 ORTHO05D003066 4.6e-07 59.3 161 29.8
Peaxi162Scf00505g00053 Petunia axillaris HOM05D002903 ORTHO05D003066 4.6e-07 59.3 181 28.7
Eucgr.J01339 Eucalyptus grandis HOM05D002903 ORTHO05D003066 6.0e-07 58.9 263 25.1
Thhalv10008635m.g Eutrema salsugineum HOM05D002903 ORTHO05D003066 6.0e-07 58.9 130 33.8
Sabra05G0141500 Salix brachista HOM05D002903 ORTHO05D003066 6.0e-07 58.9 185 27.6
TAR376G0422 Trochodendron aralioides HOM05D002903 ORTHO05D003066 6.0e-07 58.9 228 25.4
Oeu001551.1 Olea europaea HOM05D002903 ORTHO05D003066 7.9e-07 58.5 181 30.4
Psat6g040160 Pisum sativum HOM05D002903 ORTHO05D003066 7.9e-07 58.5 176 27.3
Sc26g0002820 Simmondsia chinensis HOM05D002903 ORTHO05D003066 7.9e-07 58.5 123 38.2
PGSC0003DMG400013037 Solanum tuberosum HOM05D002903 ORTHO05D003066 1.0e-06 58.2 164 29.3
Phvul.009G132400 Phaseolus vulgaris HOM05D002903 ORTHO05D003066 1.3e-06 57.8 158 31.6
BraA07t31783Z Brassica rapa HOM05D002903 ORTHO05D003066 2.3e-06 57.0 138 31.2
Potri.005G185200 Populus trichocarpa HOM05D002903 ORTHO05D003066 2.3e-06 57.0 133 37.6
CiPaw.15G024600 Carya illinoinensis HOM05D002903 ORTHO05D003066 3.0e-06 56.6 177 30.5
A07p42590 Brassica napus HOM05D000744 ORTHO05D000332 3.9e-06 56.2 128 34.4
MELO3C008433.2 Cucumis melo HOM05D002903 ORTHO05D003066 3.9e-06 56.2 222 27.0
Lj7P356T43 Lonicera japonica HOM05D002903 ORTHO05D003066 3.9e-06 56.2 176 29.0
MD05G1009200 Malus domestica HOM05D002903 ORTHO05D003066 3.9e-06 56.2 116 33.6
Manes.12G157200 Manihot esculenta HOM05D002903 ORTHO05D003066 3.9e-06 56.2 101 36.6
Medtr1g029550 Medicago truncatula HOM05D002903 ORTHO05D003066 3.9e-06 56.2 117 34.2
Medtr3g096450 Medicago truncatula HOM05D002903 ORTHO05D003066 3.9e-06 56.2 169 34.9
THA.LOC104812056 Tarenaya hassleriana HOM05D002903 ORTHO05D003066 3.9e-06 56.2 146 32.2
CsaV3_6G031200 Cucumis sativus L. HOM05D002903 ORTHO05D003066 5.1e-06 55.8 223 26.9
Potri.005G064700 Populus trichocarpa HOM05D002903 ORTHO05D003066 5.1e-06 55.8 237 27.4
Sp5g32140 Schrenkiella parvula HOM05D002903 ORTHO05D003066 6.6e-06 55.5 150 30.0
Migut.H00687 Erythranthe guttata HOM05D002903 ORTHO05D003066 8.7e-06 55.1 154 31.8
Eucgr.J01342 Eucalyptus grandis HOM05D002903 ORTHO05D003066 8.7e-06 55.1 211 25.1
Sabra05G0053700 Salix brachista HOM05D002903 ORTHO05D003066 8.7e-06 55.1 179 30.7


User provided reference genes

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