Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 1.9e-159 565.8 304 100.0
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 6.3e-110 401.4 292 75.7
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 1.1e-77 294.3 304 56.6
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 1.1e-58 231.1 318 45.3
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 2.1e-44 183.7 335 36.1
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.0e-43 181.4 345 36.8
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.0e-43 181.4 345 37.4
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 8.7e-43 178.3 343 34.1
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 8.7e-43 178.3 350 36.0
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 7.4e-42 175.3 343 35.9
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 2.8e-41 173.3 332 36.1
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 1.1e-40 171.4 350 35.4
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 3.1e-40 169.9 297 39.4
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 4.1e-40 169.5 324 36.1
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 5.3e-40 169.1 345 33.9
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 1.2e-39 167.9 350 34.9
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 7.6e-39 165.2 326 34.0
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.7e-38 164.1 348 34.5
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 2.9e-38 163.3 298 38.3
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 2.9e-38 163.3 345 33.9
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 3.8e-38 162.9 340 33.5
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 5.0e-38 162.5 338 35.2
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 6.5e-38 162.2 340 35.0
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.4e-37 161.0 336 33.3
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 7.2e-37 158.7 307 34.2
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 2.7e-36 156.8 315 35.2
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 6.1e-36 155.6 346 34.1
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 6.1e-36 155.6 359 32.6
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 7.9e-36 155.2 330 32.7
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.0e-35 154.8 323 33.7
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.3e-35 153.7 353 34.6
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 2.3e-35 153.7 369 34.7
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 3.0e-35 153.3 339 33.0
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.9e-35 152.9 352 31.8
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.9e-35 152.9 341 33.1
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.1e-35 152.5 358 32.7
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 5.1e-35 152.5 351 31.9
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 1.1e-34 151.4 363 33.3
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.1e-34 151.4 352 31.5
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.9e-34 150.6 342 31.9
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 3.3e-34 149.8 340 33.5
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 4.3e-34 149.4 362 30.7
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 4.3e-34 149.4 363 33.1
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.3e-33 147.9 292 33.9
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 2.8e-33 146.7 295 34.6
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 4.8e-33 146.0 367 29.4
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 8.2e-33 145.2 336 32.1
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.1e-32 144.8 355 29.9
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 1.4e-32 144.4 363 31.4
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 1.4e-32 144.4 339 31.6
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 2.4e-32 143.7 353 31.7
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 4.1e-32 142.9 360 31.1
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 6.9e-32 142.1 328 32.0
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.2e-31 141.4 255 38.4
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.2e-31 141.4 284 32.4
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 1.5e-31 141.0 336 31.8
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 2.6e-31 140.2 309 35.0
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 4.5e-31 139.4 337 31.2
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 5.9e-31 139.0 357 31.1
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.0e-30 138.3 326 31.9
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 1.3e-30 137.9 357 30.0
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 2.2e-30 137.1 327 31.8
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 2.2e-30 137.1 293 35.2
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.9e-30 136.7 312 32.4
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.9e-30 136.7 282 31.9
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 3.8e-30 136.3 328 32.0
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 4.2e-29 132.9 337 30.9
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 2.7e-28 130.2 343 29.7
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 7.9e-28 128.6 358 30.2
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.0e-27 128.3 361 30.5
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 3.0e-27 126.7 327 30.3
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 2.0e-26 124.0 311 33.1
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 4.3e-26 122.9 360 29.7
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 5.7e-26 122.5 331 28.4
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 1.3e-25 121.3 350 29.7
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.3e-25 121.3 309 32.7
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 2.8e-25 120.2 246 32.9
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 3.7e-25 119.8 350 30.0
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 4.8e-25 119.4 311 31.2
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 6.3e-25 119.0 269 30.9
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 6.3e-25 119.0 354 29.7
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 8.2e-25 118.6 280 29.3
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 8.2e-25 118.6 342 28.7
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.4e-24 117.9 328 29.3
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 1.8e-24 117.5 328 29.0
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 1.8e-24 117.5 333 29.1
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 3.1e-24 116.7 330 28.2
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 6.9e-24 115.5 334 28.1
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 2.6e-23 113.6 324 28.7
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 3.4e-23 113.2 240 37.9
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 3.4e-23 113.2 320 27.8
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 1.3e-22 111.3 337 27.6
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 1.7e-22 110.9 312 28.5
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 2.2e-22 110.5 331 27.8
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 2.2e-22 110.5 351 27.9
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 3.8e-22 109.8 358 26.5
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 6.5e-22 109.0 331 24.8
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 8.5e-22 108.6 353 27.8
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 4.2e-21 106.3 278 30.6
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 5.5e-21 105.9 368 25.8
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 7.2e-21 105.5 308 25.6
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 2.1e-20 104.0 256 30.5
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 3.6e-20 103.2 359 26.5
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 3.6e-20 103.2 349 26.4
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 6.1e-20 102.4 374 28.9
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 6.1e-20 102.4 358 27.1
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 1.8e-19 100.9 281 28.5
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 1.8e-19 100.9 260 28.8
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 2.3e-19 100.5 203 31.5
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 3.0e-19 100.1 317 26.2
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 3.9e-19 99.8 355 30.1
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 3.9e-19 99.8 373 29.2
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 2.6e-18 97.1 352 27.0
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 6.3e-17 92.4 351 26.2
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 9.1e-16 88.6 365 25.8
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 2.0e-15 87.4 222 29.7
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 7.7e-15 85.5 336 27.7
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 1.3e-14 84.7 356 27.5
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 2.9e-14 83.6 307 25.4
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 5.0e-14 82.8 340 25.9
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 6.5e-14 82.4 126 33.3
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 8.5e-14 82.0 369 26.8
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 4.2e-13 79.7 118 40.7
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 9.4e-13 78.6 147 40.1
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 3.0e-11 73.6 372 26.1
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.0e-10 70.9 182 30.2
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 2.8e-09 67.0 198 29.8
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 4.8e-09 66.2 122 40.2
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 2.4e-08 63.9 278 27.0
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 2.4e-08 63.9 249 24.9
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 1.2e-07 61.6 303 24.8
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 2.7e-07 60.5 351 25.4


User provided reference genes

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