Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.7e-94 349.4 181 100.0
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 4.2e-69 265.0 182 78.6
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 5.0e-62 241.5 183 72.1
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.0e-42 176.4 185 59.5
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.0e-26 123.2 209 43.1
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.6e-26 122.9 192 45.8
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 3.4e-26 122.5 212 42.5
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 3.4e-26 122.5 214 41.6
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 2.9e-25 119.4 217 41.9
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 8.3e-25 117.9 187 46.5
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 8.3e-25 117.9 187 46.5
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 8.3e-25 117.9 197 45.7
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.1e-24 117.5 182 44.0
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-24 116.7 188 45.7
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.4e-24 116.3 211 45.5
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 4.1e-24 115.5 196 45.4
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 4.1e-24 115.5 211 40.8
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 1.2e-23 114.0 209 40.2
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 1.2e-23 114.0 215 42.8
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.6e-23 113.6 216 41.2
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 3.5e-23 112.5 206 42.2
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 3.5e-23 112.5 201 44.3
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 3.5e-23 112.5 221 41.6
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 3.5e-23 112.5 225 40.4
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 3.5e-23 112.5 216 38.0
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.6e-23 112.1 216 41.2
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 6.0e-23 111.7 218 40.8
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 6.0e-23 111.7 206 39.8
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.0e-22 110.9 225 39.1
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.0e-22 110.9 209 41.1
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.0e-22 110.9 216 40.7
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.3e-22 110.5 216 43.1
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 2.3e-22 109.8 200 41.5
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 5.1e-22 108.6 186 44.6
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 6.6e-22 108.2 189 42.9
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 6.6e-22 108.2 219 42.0
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.5e-21 107.1 226 39.8
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.5e-21 107.1 202 41.6
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.5e-21 106.3 194 39.7
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 2.5e-21 106.3 227 41.4
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 2.5e-21 106.3 202 40.6
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 2.5e-21 106.3 216 38.0
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 2.5e-21 106.3 211 40.8
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.3e-21 105.5 181 42.5
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 5.6e-21 105.1 202 41.6
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 9.5e-21 104.4 214 41.1
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 9.5e-21 104.4 207 38.2
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.6e-20 103.6 214 39.7
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 1.6e-20 103.6 223 38.1
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.1e-20 103.2 214 39.7
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 2.8e-20 102.8 190 43.2
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 2.8e-20 102.8 188 41.5
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 2.8e-20 102.8 204 39.2
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 4.7e-20 102.1 205 39.5
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 4.7e-20 102.1 219 37.9
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 6.2e-20 101.7 203 39.4
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 6.2e-20 101.7 221 39.4
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 8.1e-20 101.3 215 40.9
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.1e-19 100.9 185 41.1
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.4e-19 100.5 220 37.3
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.4e-19 100.5 203 40.4
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 2.3e-19 99.8 203 36.9
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.3e-19 99.8 214 40.7
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 2.3e-19 99.8 190 42.6
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 2.3e-19 99.8 190 42.6
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 4.0e-19 99.0 223 39.5
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 4.0e-19 99.0 225 35.6
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 4.0e-19 99.0 206 42.2
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.0e-19 99.0 184 40.8
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 4.0e-19 99.0 230 34.8
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 5.2e-19 98.6 213 38.5
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 5.2e-19 98.6 195 40.0
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.2e-18 97.4 189 39.7
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 1.5e-18 97.1 222 37.4
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.5e-18 97.1 185 40.0
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 1.5e-18 97.1 170 45.9
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 2.0e-18 96.7 178 44.9
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.0e-18 96.7 223 37.2
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 4.4e-18 95.5 219 36.5
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 4.4e-18 95.5 179 41.9
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 4.4e-18 95.5 190 38.9
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 5.8e-18 95.1 182 39.0
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 5.8e-18 95.1 212 39.2
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 7.5e-18 94.7 188 39.9
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.9e-18 94.4 184 40.2
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.7e-17 93.6 134 47.0
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 2.2e-17 93.2 182 41.2
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.9e-17 92.8 184 40.2
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 4.9e-17 92.0 206 36.4
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.1e-16 90.9 210 35.7
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.4e-16 90.5 218 37.2
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.9e-16 90.1 191 39.3
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 3.2e-16 89.4 195 37.9
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 3.2e-16 89.4 238 35.7
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 5.4e-16 88.6 208 37.0
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 7.1e-16 88.2 133 47.4
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 7.1e-16 88.2 208 37.0
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 2.7e-15 86.3 129 45.7
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 3.5e-15 85.9 165 41.2
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.0e-15 85.1 189 37.6
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 6.0e-15 85.1 196 40.3
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 1.0e-14 84.3 235 34.5
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.3e-14 84.0 208 36.5
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 2.3e-14 83.2 130 43.1
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 3.0e-14 82.8 172 38.4
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.0e-14 82.8 191 37.7
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 5.1e-14 82.0 108 46.3
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 5.1e-14 82.0 200 36.5
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 6.6e-14 81.6 207 34.8
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 8.6e-14 81.3 78 62.8
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 8.6e-14 81.3 215 35.8
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.9e-13 80.1 190 35.3
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 4.3e-13 79.0 212 36.3
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 5.6e-13 78.6 145 42.1
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 5.6e-13 78.6 123 42.3
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 5.6e-13 78.6 180 35.6
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 5.6e-13 78.6 196 35.2
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 5.6e-13 78.6 196 35.2
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 9.6e-13 77.8 187 35.8
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 9.6e-13 77.8 123 43.9
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 9.6e-13 77.8 171 36.3
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 9.6e-13 77.8 180 35.6
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.6e-12 77.0 122 45.9
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 2.8e-12 76.3 143 40.6
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 3.6e-12 75.9 196 34.7
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 3.6e-12 75.9 196 34.7
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 3.6e-12 75.9 196 34.7
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 4.7e-12 75.5 108 44.4
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 4.7e-12 75.5 180 34.4
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 6.2e-12 75.1 123 42.3
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 8.1e-12 74.7 209 33.5
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 1.4e-11 73.9 143 40.6
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 1.4e-11 73.9 143 40.6
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.8e-11 73.6 123 40.7
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.8e-11 73.6 123 40.7
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 4.0e-11 72.4 227 33.9
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 5.2e-11 72.0 117 41.0
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 6.8e-11 71.6 52 69.2
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 8.9e-11 71.2 147 41.5
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.2e-10 70.9 188 34.6
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 1.5e-10 70.5 185 36.8
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.0e-10 70.1 209 34.4
BcaC04g19976 Brassica carinata HOM05D010683 ORTHO05D008293 2.0e-10 70.1 182 31.3
C09p49230 Brassica napus HOM05D010683 ORTHO05D008293 2.0e-10 70.1 182 31.3
BolC9t57773H Brassica oleracea HOM05D010683 ORTHO05D008293 2.0e-10 70.1 182 31.3
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.6e-10 69.7 188 33.0
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 2.6e-10 69.7 181 32.0
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 5.8e-10 68.6 210 32.4
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 5.8e-10 68.6 183 33.9
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 5.8e-10 68.6 183 33.9
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 9.9e-10 67.8 197 32.0
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.3e-09 67.4 209 34.0
A10p14800 Brassica napus HOM05D010683 ORTHO05D008293 1.3e-09 67.4 182 31.3
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 2.2e-09 66.6 183 33.3
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.2e-09 66.6 195 31.8
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 2.9e-09 66.2 228 30.7
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.8e-09 65.9 48 66.7
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 6.4e-09 65.1 48 66.7
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 8.4e-09 64.7 202 33.7
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.4e-08 63.9 192 29.7
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.4e-08 63.9 51 56.9
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.4e-08 63.9 199 31.7
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.9e-08 63.5 145 37.2
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.4e-08 63.2 200 32.0
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 3.2e-08 62.8 113 40.7
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 5.4e-08 62.0 47 61.7
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 7.1e-08 61.6 175 35.4
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.2e-07 60.8 195 29.7
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.1e-07 60.1 195 29.2
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 4.6e-07 58.9 45 60.0
A02p08580 Brassica napus HOM05D010683 ORTHO05D008293 7.8e-07 58.2 185 31.4
BraA02t05927Z Brassica rapa HOM05D010683 ORTHO05D008293 7.8e-07 58.2 185 31.4
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 7.8e-07 58.2 46 56.5
CARHR271130 Cardamine hirsuta HOM05D010683 ORTHO05D008293 1.0e-06 57.8 181 29.8
TAR625G0485 Trochodendron aralioides HOM05D007665 ORTHO05D008293 1.7e-06 57.0 46 54.3
BcaB08g36093 Brassica carinata HOM05D010683 ORTHO05D008293 3.0e-06 56.2 189 27.5
Sp6g19060 Schrenkiella parvula HOM05D010683 ORTHO05D008293 3.0e-06 56.2 185 29.7
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.9e-06 55.8 106 38.7
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.9e-06 55.8 141 33.3
ATR0111G010 Amborella trichopoda HOM05D001536 ORTHO05D001442 6.6e-06 55.1 44 56.8
MBI16_g38083_MAGBIO Magnolia biondii HOM05D007665 ORTHO05D008293 6.6e-06 55.1 47 55.3
Thhalv10014550m.g Eutrema salsugineum HOM05D010683 ORTHO05D008293 8.7e-06 54.7 187 30.5
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 8.7e-06 54.7 47 53.2


User provided reference genes

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