Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 1.6e-195 686.0 383 100.0
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 6.6e-173 610.9 371 89.2
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 8.4e-168 594.0 388 86.6
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 2.4e-167 592.4 385 85.7
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 6.6e-165 584.3 382 88.0
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 2.8e-163 578.9 388 82.7
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 6.0e-158 561.2 387 79.1
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 2.8e-155 552.4 385 78.4
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 2.8e-155 552.4 364 82.7
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 8.1e-155 550.8 381 78.2
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.4e-154 549.3 378 82.5
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 4.0e-154 548.5 385 81.6
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 9.0e-154 547.4 388 80.4
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 1.2e-153 547.0 370 79.7
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 1.2e-153 547.0 366 82.8
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 2.6e-153 545.8 387 81.4
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 2.6e-153 545.8 388 77.6
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 4.5e-153 545.0 390 80.3
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 5.8e-153 544.7 388 79.9
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 7.6e-153 544.3 387 76.2
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 7.6e-153 544.3 388 77.8
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 1.3e-152 543.5 388 81.2
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 3.8e-152 542.0 385 82.3
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 3.8e-152 542.0 385 81.6
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 6.5e-152 541.2 369 81.8
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 8.4e-152 540.8 387 77.3
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 1.1e-151 540.4 380 79.7
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 1.9e-151 539.7 495 64.8
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 9.3e-151 537.3 381 79.8
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 1.2e-150 537.0 380 80.0
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 1.2e-150 537.0 387 78.6
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 4.6e-150 535.0 380 80.3
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 4.6e-150 535.0 390 79.2
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 4.6e-150 535.0 390 79.2
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 1.0e-149 533.9 367 80.9
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.3e-149 533.5 388 77.1
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 3.9e-149 531.9 387 77.0
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 5.1e-149 531.6 387 80.1
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 6.7e-149 531.2 373 76.9
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 8.7e-149 530.8 380 77.9
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 1.1e-148 530.4 378 79.4
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 1.1e-148 530.4 367 83.1
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.5e-148 530.0 387 79.8
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 1.5e-148 530.0 388 77.6
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.7e-148 528.1 388 80.2
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 9.6e-148 527.3 367 78.7
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 1.3e-147 526.9 373 78.8
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 2.1e-147 526.2 388 79.6
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 2.1e-147 526.2 384 79.4
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 2.8e-147 525.8 359 82.5
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.1e-146 523.9 388 76.0
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 1.1e-146 523.9 381 77.4
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 2.4e-146 522.7 361 80.6
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 2.4e-146 522.7 386 79.0
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 6.9e-146 521.2 388 75.8
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 1.2e-145 520.4 359 81.9
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 3.4e-145 518.8 356 78.4
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 3.4e-145 518.8 391 75.7
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 4.5e-145 518.5 396 77.5
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 7.6e-145 517.7 391 77.0
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 1.0e-144 517.3 390 77.7
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.5e-143 512.7 395 77.2
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 4.6e-142 508.4 387 76.0
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.3e-141 506.9 364 79.4
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 3.9e-141 505.4 369 76.2
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 2.5e-140 502.7 335 83.9
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 5.7e-140 501.5 381 74.3
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 7.4e-140 501.1 386 75.4
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.6e-139 500.0 387 75.5
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 2.2e-139 499.6 382 77.0
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 3.7e-139 498.8 370 77.8
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 4.8e-139 498.4 379 73.6
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 4.8e-139 498.4 320 88.1
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 4.1e-138 495.4 421 72.4
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 6.9e-138 494.6 386 74.9
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 9.0e-138 494.2 351 77.8
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 2.0e-137 493.0 373 77.5
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 2.6e-137 492.7 352 78.7
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 2.6e-137 492.7 372 76.1
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 7.7e-137 491.1 372 75.8
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 7.7e-137 491.1 367 77.7
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 2.9e-136 489.2 346 79.8
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 2.9e-136 489.2 343 80.2
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 5.0e-136 488.4 368 76.1
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 2.1e-134 483.0 373 76.7
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 3.6e-134 482.3 367 76.6
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.6e-134 481.9 351 80.1
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 7.9e-134 481.1 343 76.1
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.0e-133 480.7 383 72.8
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 1.0e-133 480.7 366 77.6
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 3.3e-132 475.7 350 78.3
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 2.2e-131 473.0 376 72.1
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.8e-131 472.6 347 78.4
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 4.8e-131 471.9 367 74.4
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 4.1e-130 468.8 344 74.1
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 4.1e-130 468.8 383 74.2
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 5.3e-130 468.4 343 74.6
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 2.6e-129 466.1 355 77.5
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.9e-128 462.6 367 75.2
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 2.9e-128 462.6 357 73.1
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 3.8e-128 462.2 353 75.9
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 1.9e-127 459.9 386 67.6
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 2.5e-127 459.5 354 74.0
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 4.2e-127 458.8 343 75.2
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 5.5e-127 458.4 350 74.3
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 1.2e-126 457.2 355 73.8
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 1.2e-126 457.2 355 73.8
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 1.6e-126 456.8 344 75.0
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 6.1e-126 454.9 379 65.4
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 1.8e-125 453.4 354 75.1
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.6e-124 449.5 357 71.1
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 4.4e-124 448.7 343 73.8
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 4.1e-122 442.2 345 74.8
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 6.5e-120 434.9 347 74.6
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 4.2e-119 432.2 358 68.2
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 6.7e-117 424.9 331 68.6
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 7.5e-116 421.4 312 75.6
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 4.1e-114 415.6 390 66.4
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.7e-113 412.9 360 61.7
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 8.5e-112 407.9 268 82.8
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.0e-109 401.0 380 66.1
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.7e-108 395.2 359 60.7
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.1e-106 389.4 346 61.6
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 4.1e-106 389.0 284 80.3
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.4e-106 388.7 293 75.8
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 7.0e-106 388.3 319 70.2
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.2e-102 377.5 306 64.7
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 8.0e-102 374.8 308 74.7
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.3e-99 367.5 330 60.6
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 3.7e-99 365.9 361 57.6
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 5.9e-97 358.6 365 56.4
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 1.1e-95 354.4 262 74.8
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.7e-94 349.0 352 56.5
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 8.0e-94 348.2 218 87.6
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 2.3e-93 346.7 256 75.8
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 6.8e-93 345.1 358 58.4
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.9e-87 327.0 224 82.6
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 2.8e-86 323.2 286 68.2
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 6.0e-65 252.3 182 76.4
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.4e-50 203.8 125 88.0
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.6e-46 189.9 139 74.1
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 5.3e-45 186.0 130 80.0
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.1e-42 178.3 150 71.3
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 3.3e-39 166.8 141 70.9
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 1.6e-33 147.9 97 81.4
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 2.1e-30 137.5 70 92.9
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 2.1e-30 137.5 70 92.9
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 3.1e-29 133.7 70 91.4
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 3.2e-26 123.6 105 67.6
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.1e-21 106.7 115 47.0
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 2.9e-19 100.5 83 67.5
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.2e-17 95.1 130 48.5
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-15 88.6 92 56.5
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 2.8e-14 84.0 58 82.8
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 4.8e-14 83.2 81 61.7
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 8.2e-14 82.4 62 82.3
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.1e-13 82.0 97 54.6
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 1.5e-12 78.2 42 92.9
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 1.0e-11 75.5 67 55.2
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 3.8e-11 73.6 57 73.7
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 1.0e-08 65.5 101 48.5
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 3.9e-08 63.5 261 25.3
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 3.7e-06 57.0 38 86.8
MCO09G810 Micromonas commoda HOM05D004327 ORTHO05D005032 3.7e-06 57.0 164 26.8


User provided reference genes

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