Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0322101 Helianthus annuus HOM05D024224 ORTHO05D003264 1.1e-78 296.6 159 100.0
ECA232G1991 Erigeron canadensis HOM05D024224 ORTHO05D003264 9.8e-38 160.6 169 65.1
Lsat_1_v5_gn_0_1200 Lactuca sativa HOM05D024224 ORTHO05D003264 6.6e-26 121.3 161 57.1
HanXRQChr06g0185341 Helianthus annuus HOM05D024224 ORTHO05D003264 1.6e-24 116.7 165 52.7
Lsat_1_v5_gn_2_7721 Lactuca sativa HOM05D024224 ORTHO05D003264 5.8e-22 108.2 174 45.4
Duzib093G0576 Durio zibethinus HOM05D003331 ORTHO05D003264 7.9e-11 71.2 70 60.0
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 5.1e-10 68.6 183 37.7
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 8.7e-10 67.8 80 52.5
MELO3C013748.2 Cucumis melo HOM05D003331 ORTHO05D003264 1.1e-09 67.4 116 41.4
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 1.1e-09 67.4 196 35.7
CsaV3_3G000600 Cucumis sativus L. HOM05D003331 ORTHO05D003264 2.5e-09 66.2 125 39.2
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 2.5e-09 66.2 70 55.7
Eucgr.F01674 Eucalyptus grandis HOM05D003331 ORTHO05D003264 3.3e-09 65.9 70 57.1
PGR031G1921 Punica granatum HOM05D003331 ORTHO05D003264 3.3e-09 65.9 80 51.2
Gorai.009G192500 Gossypium raimondii HOM05D003331 ORTHO05D003264 4.3e-09 65.5 80 50.0
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 7.3e-09 64.7 69 55.1
ClCG10G000520 Citrullus lanatus HOM05D003331 ORTHO05D003264 1.3e-08 63.9 68 55.9
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.3e-08 63.9 70 54.3
Phvul.003G266100 Phaseolus vulgaris HOM05D003331 ORTHO05D003264 1.6e-08 63.5 168 36.9
Gohir.D05G187300 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.1e-08 63.2 80 48.8
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 4.8e-08 62.0 208 33.2
Lsat_1_v5_gn_4_145080 Lactuca sativa HOM05D003331 ORTHO05D003264 4.8e-08 62.0 70 54.3
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 4.8e-08 62.0 193 34.7
PGR102G0808 Punica granatum HOM05D003331 ORTHO05D003264 6.2e-08 61.6 68 54.4
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 6.2e-08 61.6 198 29.3
Sc02g0008740 Simmondsia chinensis HOM05D003331 ORTHO05D003264 8.1e-08 61.2 70 51.4
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 1.1e-07 60.8 197 34.5
HanXRQChr05g0133741 Helianthus annuus HOM05D003331 ORTHO05D003264 1.1e-07 60.8 70 54.3
HPP92_022194 Vanilla planifolia HOM05D003331 ORTHO05D003264 1.1e-07 60.8 68 54.4
HPP92_022184 Vanilla planifolia HOM05D003331 ORTHO05D003264 1.4e-07 60.5 68 54.4
Gorai.002G122200 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.8e-07 60.1 69 53.6
Lsat_1_v5_gn_8_85300 Lactuca sativa HOM05D000531 ORTHO05D001630 1.8e-07 60.1 70 58.6
Gohir.A01G109700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.4e-07 59.7 198 32.3
Gohir.D05G258000 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.4e-07 59.7 69 52.2
HanXRQChr15g0487141 Helianthus annuus HOM05D003331 ORTHO05D003264 3.1e-07 59.3 190 33.2
Lalb_Chr09g0321511 Lupinus albus HOM05D003331 ORTHO05D003264 3.1e-07 59.3 181 34.3
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 3.1e-07 59.3 190 33.2
EL10Ac1g02139 Beta vulgaris HOM05D003331 ORTHO05D003264 4.0e-07 58.9 84 46.4
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 4.0e-07 58.9 70 51.4
ECA232G3395 Erigeron canadensis HOM05D003331 ORTHO05D003264 4.0e-07 58.9 82 47.6
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 4.0e-07 58.9 70 51.4
Gorai.009G269300 Gossypium raimondii HOM05D003331 ORTHO05D003264 5.3e-07 58.5 69 52.2
Prupe.1G508200 Prunus persica HOM05D000531 ORTHO05D001630 5.3e-07 58.5 71 56.3
CANSAT21G2102 Cannabis sativa HOM05D000531 ORTHO05D001630 6.9e-07 58.2 71 56.3
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 6.9e-07 58.2 70 51.4
Migut.K00199 Erythranthe guttata HOM05D000531 ORTHO05D001630 6.9e-07 58.2 153 32.0
Glyma.11G080000 Glycine max HOM05D003331 ORTHO05D003264 6.9e-07 58.2 80 47.5
PSO339G0899 Papaver somniferum HOM05D000531 ORTHO05D001630 6.9e-07 58.2 146 37.7
PSO541G2637 Papaver somniferum HOM05D003331 ORTHO05D003264 6.9e-07 58.2 71 49.3
PSO675G4415 Papaver somniferum HOM05D003331 ORTHO05D003264 6.9e-07 58.2 71 49.3
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 9.0e-07 57.8 150 34.0
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 9.0e-07 57.8 70 52.9
Gorai.003G007000 Gossypium raimondii HOM05D003331 ORTHO05D003264 9.0e-07 57.8 70 52.9
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 9.0e-07 57.8 168 34.5
PSO384G4223 Papaver somniferum HOM05D000531 ORTHO05D001630 9.0e-07 57.8 146 37.7
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.2e-06 57.4 70 52.9
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.2e-06 57.4 70 51.4
unitig_26.g9887 Utricularia gibba HOM05D003331 ORTHO05D003264 1.2e-06 57.4 67 55.2
Actinidia15450 Actinidia chinensis HOM05D003331 ORTHO05D003264 1.5e-06 57.0 70 54.3
BcaC07g40114 Brassica carinata HOM05D000531 ORTHO05D001630 1.5e-06 57.0 72 58.3
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 1.5e-06 57.0 70 50.0
ECA236G1381 Erigeron canadensis HOM05D000531 ORTHO05D001630 1.5e-06 57.0 70 57.1
Actinidia17008 Actinidia chinensis HOM05D003331 ORTHO05D003264 2.0e-06 56.6 186 33.9
arahy.Tifrunner.gnm1.ann1.203Q7N Arachis hypogaea HOM05D000531 ORTHO05D001630 2.0e-06 56.6 69 55.1
Gohir.A05G285300 Gossypium hirsutum HOM05D000531 ORTHO05D001630 2.0e-06 56.6 70 55.7
Gorai.009G301400 Gossypium raimondii HOM05D000531 ORTHO05D001630 2.0e-06 56.6 70 55.7
Phvul.005G011600 Phaseolus vulgaris HOM05D000531 ORTHO05D001630 2.0e-06 56.6 75 53.3
MSTRG.26201 Avicennia marina HOM05D000531 ORTHO05D001630 2.6e-06 56.2 71 53.5
BcaC02g09874 Brassica carinata HOM05D000531 ORTHO05D001630 2.6e-06 56.2 72 56.9
CSS0046145 Camellia sinensis var. sinensis HOM05D000531 ORTHO05D001630 2.6e-06 56.2 124 41.1
CBR_g2925 Chara braunii HOM05D000531 ORTHO05D000877 2.6e-06 56.2 76 50.0
Ciclev10012205m.g Citrus clementina HOM05D000531 ORTHO05D001630 2.6e-06 56.2 69 55.1
Gohir.A05G285200 Gossypium hirsutum HOM05D000531 ORTHO05D001630 2.6e-06 56.2 69 52.2
MD02G1125100 Malus domestica HOM05D003331 ORTHO05D003264 2.6e-06 56.2 89 47.2
Oeu012566.1 Olea europaea HOM05D003331 ORTHO05D003264 2.6e-06 56.2 68 52.9
Phvul.011G186800 Phaseolus vulgaris HOM05D000531 ORTHO05D001630 2.6e-06 56.2 69 53.6
RcHm_v2.0_Chr1g0330441 Rosa chinensis HOM05D000531 ORTHO05D001630 2.6e-06 56.2 70 57.1
Hund19046 Selenicereus undatus HOM05D000531 ORTHO05D001630 2.6e-06 56.2 69 53.6
HPP92_012946 Vanilla planifolia HOM05D003331 ORTHO05D003264 2.6e-06 56.2 68 52.9
Aa31LG3G980 Aethionema arabicum HOM05D000531 ORTHO05D001630 3.4e-06 55.8 69 53.6
BcaC08g44808 Brassica carinata HOM05D000531 ORTHO05D001630 3.4e-06 55.8 72 56.9
Dinv37063 Davidia involucrata HOM05D000531 ORTHO05D001630 3.4e-06 55.8 127 42.5
HanXRQChr04g0125451 Helianthus annuus HOM05D000531 ORTHO05D001630 3.4e-06 55.8 68 57.4
Peaxi162Scf00003g05367 Petunia axillaris HOM05D000531 ORTHO05D001630 3.4e-06 55.8 70 57.1
PGR083G0975 Punica granatum HOM05D003331 ORTHO05D003264 3.4e-06 55.8 70 48.6
arahy.Tifrunner.gnm1.ann1.ZS1FXZ Arachis hypogaea HOM05D000531 ORTHO05D001630 4.5e-06 55.5 69 53.6
EL10Ac3g07386 Beta vulgaris HOM05D000531 ORTHO05D001630 4.5e-06 55.5 83 48.2
Cpa.g.sc33.182 Carica papaya HOM05D000531 ORTHO05D001630 4.5e-06 55.5 72 55.6
ClCG08G008570 Citrullus lanatus HOM05D000531 ORTHO05D001630 4.5e-06 55.5 70 55.7
CsaV3_6G004560 Cucumis sativus L. HOM05D000531 ORTHO05D001630 4.5e-06 55.5 70 55.7
Migut.J01594 Erythranthe guttata HOM05D000531 ORTHO05D001630 4.5e-06 55.5 81 50.6
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 4.5e-06 55.5 70 47.1
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 4.5e-06 55.5 70 50.0
TAR633G1290 Trochodendron aralioides HOM05D000531 ORTHO05D001630 4.5e-06 55.5 70 55.7
Aa31LG10G11700 Aethionema arabicum HOM05D000531 ORTHO05D001630 5.8e-06 55.1 70 57.1
Carub.0005s2358 Capsella rubella HOM05D000531 ORTHO05D001630 5.8e-06 55.1 70 57.1
CARHR167000 Cardamine hirsuta HOM05D000531 ORTHO05D001630 5.8e-06 55.1 70 57.1
Ca_08335_v3 Cicer arietinum L. HOM05D000531 ORTHO05D001630 5.8e-06 55.1 111 39.6
Thhalv10006121m.g Eutrema salsugineum HOM05D000531 ORTHO05D001630 5.8e-06 55.1 70 57.1
Glyma.04G124200 Glycine max HOM05D000531 ORTHO05D001630 5.8e-06 55.1 69 55.1
Glyma.06G022300 Glycine max HOM05D000531 ORTHO05D003264 5.8e-06 55.1 72 50.0
PGR142G1180 Punica granatum HOM05D000531 ORTHO05D001630 5.8e-06 55.1 122 39.3
SalBow6G4932 Salvia bowleyana HOM05D000531 ORTHO05D001630 5.8e-06 55.1 118 41.5
Sp5g05740 Schrenkiella parvula HOM05D000531 ORTHO05D001630 5.8e-06 55.1 70 57.1
TWI36G0579 Tripterygium wilfordii HOM05D000531 ORTHO05D001630 5.8e-06 55.1 70 60.0
GSVIVG01001940001 Vitis vinifera HOM05D000531 ORTHO05D001630 5.8e-06 55.1 69 52.2
Actinidia17971 Actinidia chinensis HOM05D000531 ORTHO05D009735 7.6e-06 54.7 68 57.4
Actinidia37870 Actinidia chinensis HOM05D000531 ORTHO05D001630 7.6e-06 54.7 68 57.4
BcaC07g39995 Brassica carinata HOM05D000531 ORTHO05D001630 7.6e-06 54.7 73 52.1
CAN.G128.130 Capsicum annuum HOM05D000531 ORTHO05D001630 7.6e-06 54.7 136 39.7
FAN28G0558 Fragaria x ananassa HOM05D003331 ORTHO05D003264 7.6e-06 54.7 68 48.5
Os09g0540800 Oryza sativa ssp. japonica HOM05D003331 ORTHO05D003264 7.6e-06 54.7 82 50.0
PGR044G2422 Punica granatum HOM05D000531 ORTHO05D001630 7.6e-06 54.7 69 52.2
Sabra02G0014700 Salix brachista HOM05D003331 ORTHO05D003264 7.6e-06 54.7 192 31.2
unitig_899.g15549 Utricularia gibba HOM05D000531 ORTHO05D003264 7.6e-06 54.7 72 52.8
CAN.G959.45 Capsicum annuum HOM05D000531 ORTHO05D001630 9.9e-06 54.3 70 55.7
MD07G1052500 Malus domestica HOM05D000531 ORTHO05D001630 9.9e-06 54.3 70 55.7


User provided reference genes

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