Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0321221 Helianthus annuus HOM05D001070 ORTHO05D002096 8.5e-50 200.3 120 100.0
HanXRQChr00c0336g0573731 Helianthus annuus HOM05D001070 ORTHO05D002096 2.1e-48 195.7 119 97.5
HanXRQChr00c0379g0574331 Helianthus annuus HOM05D001070 ORTHO05D002096 2.1e-48 195.7 119 97.5
HanXRQChr02g0059751 Helianthus annuus HOM05D001070 ORTHO05D005132 2.1e-48 195.7 119 97.5
HanXRQChr11g0333751 Helianthus annuus HOM05D001070 ORTHO05D002096 2.1e-48 195.7 119 97.5
HanXRQChr15g0465401 Helianthus annuus HOM05D001070 ORTHO05D002096 2.1e-48 195.7 119 97.5
HanXRQChr15g0465511 Helianthus annuus HOM05D001070 ORTHO05D002096 2.1e-48 195.7 119 97.5
HanXRQChr17g0557721 Helianthus annuus HOM05D001070 ORTHO05D002096 2.1e-48 195.7 119 97.5
HanXRQChr17g0569701 Helianthus annuus HOM05D001070 ORTHO05D005132 2.1e-48 195.7 119 97.5
HanXRQCPg0580321 Helianthus annuus HOM05D001070 ORTHO05D005132 2.1e-48 195.7 119 97.5
HanXRQChr17g0557701 Helianthus annuus HOM05D001070 ORTHO05D002096 1.8e-47 192.6 120 97.5
HanXRQChr00c0703g0576891 Helianthus annuus HOM05D001070 ORTHO05D002096 3.4e-43 178.3 110 97.3
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 9.4e-17 90.5 67 70.1
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.6e-16 88.6 77 62.3
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.6e-16 88.6 77 62.3
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.6e-16 88.6 77 62.3
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.6e-16 88.6 77 62.3
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.6e-16 88.6 77 62.3
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.6e-16 88.6 77 62.3
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.6e-16 88.6 77 62.3
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.6e-16 88.6 77 62.3
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.4e-15 86.7 78 64.1
HanXRQChr17g0569781 Helianthus annuus HOM05D001070 ORTHO05D002096 2.3e-15 85.9 43 100.0
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 3.0e-15 85.5 72 63.9
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 5.2e-15 84.7 62 72.6
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 5.2e-15 84.7 84 58.3
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 5.2e-15 84.7 84 58.3
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.8e-15 84.3 74 62.2
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.8e-15 84.3 74 62.2
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.8e-15 84.3 74 62.2
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.8e-15 84.3 74 62.2
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 6.8e-15 84.3 74 63.5
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 8.8e-15 84.0 84 58.3
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.2e-14 83.6 75 60.0
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 1.2e-14 83.6 85 56.5
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 2.0e-14 82.8 69 68.1
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 2.0e-14 82.8 69 68.1
BolSC35t60697H Brassica oleracea HOM05D001070 ORTHO05D002096 2.6e-14 82.4 74 63.5
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 2.6e-14 82.4 74 63.5
Gohir.A10G117450 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.4e-14 82.0 84 56.0
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 3.4e-14 82.0 84 57.1
C09p25530 Brassica napus HOM05D001070 ORTHO05D002096 4.4e-14 81.6 69 66.7
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 4.4e-14 81.6 69 66.7
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 4.4e-14 81.6 69 66.7
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 4.4e-14 81.6 69 66.7
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 4.4e-14 81.6 69 66.7
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 4.4e-14 81.6 69 66.7
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 4.4e-14 81.6 69 66.7
BolSC45t60915H Brassica oleracea HOM05D001070 ORTHO05D002096 4.4e-14 81.6 69 66.7
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 4.4e-14 81.6 69 66.7
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 4.4e-14 81.6 69 66.7
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 5.7e-14 81.3 80 58.8
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 5.7e-14 81.3 82 63.4
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 5.7e-14 81.3 76 61.8
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 5.7e-14 81.3 76 61.8
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 5.7e-14 81.3 76 61.8
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 5.7e-14 81.3 74 60.8
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 7.5e-14 80.9 81 58.0
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 7.5e-14 80.9 81 58.0
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 7.5e-14 80.9 84 57.1
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 9.8e-14 80.5 69 66.7
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 9.8e-14 80.5 69 66.7
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 9.8e-14 80.5 69 66.7
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 9.8e-14 80.5 69 66.7
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 9.8e-14 80.5 69 66.7
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 9.8e-14 80.5 69 66.7
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 9.8e-14 80.5 67 65.7
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 2.8e-13 79.0 78 59.0
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.8e-13 79.0 78 59.0
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.8e-13 79.0 78 59.0
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 2.8e-13 79.0 78 59.0
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.8e-13 79.0 78 59.0
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.8e-13 79.0 78 59.0
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.8e-13 79.0 78 59.0
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 2.8e-13 79.0 78 59.0
BraSC25t45916Z Brassica rapa HOM05D001070 ORTHO05D002096 4.8e-13 78.2 65 67.7
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.8e-13 78.2 78 56.4
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 8.3e-13 77.4 78 57.7
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 8.3e-13 77.4 78 56.4
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.3e-13 77.4 78 56.4
RcHm_v2.0_Chr4g0392791 Rosa chinensis HOM05D001070 ORTHO05D002096 1.4e-12 76.6 72 59.7
Solyc01g017240.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.4e-12 76.6 59 69.5
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 1.8e-12 76.3 82 62.2
BolSC29t60620H Brassica oleracea HOM05D001070 ORTHO05D002096 2.4e-12 75.9 64 67.2
BolSC37t60788H Brassica oleracea HOM05D001070 ORTHO05D002096 2.4e-12 75.9 64 67.2
Solyc12g036550.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.4e-12 75.9 78 57.7
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 9.1e-12 73.9 75 52.0
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 9.1e-12 73.9 75 52.0
Gohir.A11G056832 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.0e-10 70.5 75 53.3
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 3.8e-10 68.6 73 54.8
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.8e-10 68.6 67 58.2
HanXRQChr08g0222861 Helianthus annuus HOM05D001070 ORTHO05D002096 3.8e-10 68.6 55 90.9
Potri.002G008176 Populus trichocarpa HOM05D001070 ORTHO05D002096 6.6e-10 67.8 58 62.1
HPP92_028431 Vanilla planifolia HOM05D001070 ORTHO05D002096 3.3e-09 65.5 66 53.0
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 1.0e-07 60.5 70 45.7
EL10Ac4g08269 Beta vulgaris HOM05D001070 ORTHO05D002096 3.0e-07 58.9 73 49.3
BraSC138t45529Z Brassica rapa HOM05D001070 ORTHO05D002096 3.0e-07 58.9 69 55.1
Migut.D01388 Erythranthe guttata HOM05D001070 ORTHO05D002096 8.9e-07 57.4 68 48.5
Lju5009P0T27 Lonicera japonica HOM05D001070 ORTHO05D002096 2.6e-06 55.8 63 54.0
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 5.7e-06 54.7 52 53.8


User provided reference genes

Program Settings