Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 1.1e-84 317.0 218 100.0
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 9.9e-81 303.9 188 97.3
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 4.9e-80 301.6 188 95.2
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 7.4e-60 234.6 188 82.4
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 1.6e-54 216.9 188 73.9
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 1.4e-39 167.2 190 52.6
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 4.2e-39 165.6 186 53.8
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 8.7e-37 157.9 161 60.2
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 9.7e-36 154.5 181 52.5
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.3e-35 154.1 174 52.3
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 4.1e-34 149.1 171 51.5
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 2.0e-33 146.7 202 45.5
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 7.7e-33 144.8 181 50.3
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.3e-32 144.1 188 46.8
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 2.9e-32 142.9 192 45.3
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.9e-32 142.9 192 45.3
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 2.9e-32 142.9 189 48.7
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 3.8e-32 142.5 175 49.1
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 3.8e-32 142.5 188 45.7
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.0e-32 142.1 192 44.8
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 6.5e-32 141.7 200 44.5
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 6.5e-32 141.7 163 56.4
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 8.5e-32 141.4 190 48.9
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 8.5e-32 141.4 199 44.2
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 8.5e-32 141.4 169 50.9
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.1e-31 141.0 196 41.3
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.4e-31 140.6 165 49.7
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.4e-31 140.6 174 48.9
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.4e-31 140.6 186 46.8
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.5e-31 139.8 192 44.3
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 4.2e-31 139.0 187 48.1
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 5.5e-31 138.7 190 48.4
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 5.5e-31 138.7 176 46.0
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 9.4e-31 137.9 146 58.2
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 9.4e-31 137.9 192 44.3
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 1.2e-30 137.5 200 45.0
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 1.2e-30 137.5 192 46.9
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.6e-30 137.1 161 49.1
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.1e-30 136.7 180 52.8
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 2.1e-30 136.7 191 46.1
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 2.1e-30 136.7 191 46.1
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 2.1e-30 136.7 192 43.8
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 2.7e-30 136.3 188 47.3
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 2.7e-30 136.3 188 47.3
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.6e-30 136.0 183 44.8
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 3.6e-30 136.0 185 46.5
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 3.6e-30 136.0 186 44.6
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 3.6e-30 136.0 175 48.6
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 6.1e-30 135.2 156 50.6
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 7.9e-30 134.8 187 42.2
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.0e-29 134.4 200 42.5
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.0e-29 134.4 147 54.4
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 1.0e-29 134.4 147 54.4
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 1.0e-29 134.4 177 47.5
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.8e-29 133.7 157 51.0
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.8e-29 133.7 191 45.0
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 2.3e-29 133.3 183 43.7
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 2.3e-29 133.3 167 46.1
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 3.0e-29 132.9 146 59.6
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 3.0e-29 132.9 187 41.7
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 3.0e-29 132.9 196 42.9
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 3.0e-29 132.9 167 47.3
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 5.1e-29 132.1 169 46.7
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 6.7e-29 131.7 166 50.6
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 6.7e-29 131.7 166 45.8
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 6.7e-29 131.7 165 47.3
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 8.8e-29 131.3 171 47.4
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 2.6e-28 129.8 193 50.3
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 4.4e-28 129.0 160 46.2
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 7.4e-28 128.3 169 45.6
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 9.7e-28 127.9 184 43.5
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 1.3e-27 127.5 190 42.6
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.7e-27 127.1 199 42.2
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.7e-27 127.1 178 43.3
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.2e-27 126.7 184 45.7
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 6.3e-27 125.2 173 44.5
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 6.3e-27 125.2 186 42.5
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 8.2e-27 124.8 195 41.0
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.4e-26 124.0 195 41.0
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.8e-26 123.6 185 42.7
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.8e-26 123.6 194 46.9
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 2.4e-26 123.2 170 52.9
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 4.1e-26 122.5 173 43.9
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 5.3e-26 122.1 175 51.4
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 5.3e-26 122.1 172 44.8
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 6.9e-26 121.7 186 41.9
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 9.1e-26 121.3 178 43.3
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 1.5e-25 120.6 167 51.5
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 2.0e-25 120.2 158 46.2
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.0e-25 120.2 172 43.0
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 2.6e-25 119.8 170 52.9
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.6e-25 119.8 150 44.7
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 5.9e-25 118.6 171 50.3
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 5.9e-25 118.6 149 45.0
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 7.7e-25 118.2 155 45.2
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 1.0e-24 117.9 168 42.9
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 1.0e-24 117.9 170 51.2
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 2.2e-24 116.7 182 41.2
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 2.2e-24 116.7 171 42.7
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 2.9e-24 116.3 171 49.7
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 2.9e-24 116.3 155 44.5
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 2.5e-23 113.2 171 50.9
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 2.5e-23 113.2 171 50.9
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 3.2e-23 112.8 188 49.5
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 3.2e-23 112.8 188 49.5
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 2.7e-22 109.8 173 41.0
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 7.9e-22 108.2 181 41.4
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 1.0e-21 107.8 184 39.1
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.8e-21 107.1 112 53.6
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 3.0e-21 106.3 161 39.8
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 3.0e-21 106.3 161 39.8
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.1e-20 104.4 189 42.3
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.1e-20 104.4 185 37.3
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 3.3e-20 102.8 222 42.8
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 9.7e-20 101.3 97 56.7
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.7e-19 100.5 193 38.9
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 1.7e-19 100.5 170 37.1
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 2.2e-19 100.1 169 46.7
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 4.8e-19 99.0 163 51.5
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 9.1e-18 94.7 149 49.7
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.2e-17 94.4 153 37.3
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 3.5e-17 92.8 78 57.7
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 8.5e-16 88.2 149 36.9
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 1.5e-15 87.4 136 41.2
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 4.2e-15 85.9 116 48.3
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 5.5e-15 85.5 77 55.8
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 9.4e-15 84.7 84 52.4
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 5.7e-12 75.5 147 33.3
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 1.3e-11 74.3 85 49.4
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 6.3e-11 72.0 171 38.0
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 7.0e-10 68.6 67 50.7
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 7.7e-09 65.1 55 58.2
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 2.5e-07 60.1 44 59.1
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 4.2e-07 59.3 44 59.1
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 4.7e-06 55.8 156 30.1


User provided reference genes

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