Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 2.0e-150 536.2 361 100.0
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 4.4e-142 508.4 359 95.3
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 1.4e-116 423.7 359 84.7
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 4.3e-105 385.6 359 73.0
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 2.1e-80 303.5 188 97.3
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.1e-76 291.2 338 55.3
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 2.7e-75 286.6 362 51.4
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 6.7e-74 282.0 358 53.6
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 3.8e-69 266.2 353 51.3
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 1.4e-68 264.2 362 47.8
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.4e-68 263.5 369 48.2
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 1.2e-67 261.2 362 47.8
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.1e-67 260.4 356 47.2
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 3.5e-67 259.6 366 48.9
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 6.0e-67 258.8 366 48.9
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 3.0e-66 256.5 371 44.2
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 3.0e-66 256.5 353 48.7
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 3.0e-66 256.5 353 48.7
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 5.1e-66 255.8 350 46.6
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 5.1e-66 255.8 348 55.7
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 6.7e-66 255.4 352 52.6
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 6.7e-66 255.4 352 49.4
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 8.7e-66 255.0 365 46.0
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 2.5e-65 253.4 354 47.5
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 2.5e-65 253.4 374 48.4
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 2.5e-65 253.4 369 48.0
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 1.3e-64 251.1 346 46.2
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 2.1e-64 250.4 365 47.7
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 4.8e-64 249.2 346 46.8
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 4.8e-64 249.2 349 49.0
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 4.8e-64 249.2 345 45.8
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 8.1e-64 248.4 356 45.8
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.4e-63 247.7 349 51.9
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 1.4e-63 247.7 363 46.8
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.4e-63 247.7 363 46.8
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 2.4e-63 246.9 375 44.3
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 3.1e-63 246.5 367 47.4
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 4.0e-63 246.1 370 43.8
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 6.9e-63 245.4 378 46.3
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.9e-63 245.4 363 46.3
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 9.0e-63 245.0 358 44.4
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 9.0e-63 245.0 348 45.4
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.2e-62 244.6 354 46.0
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.2e-62 244.6 368 47.8
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.2e-62 244.6 368 47.8
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.2e-62 244.6 365 43.3
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.0e-62 243.8 373 43.2
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 2.0e-62 243.8 365 48.8
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.6e-62 243.4 378 47.1
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.6e-62 243.4 363 43.5
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 2.6e-62 243.4 351 48.4
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 3.4e-62 243.0 340 49.7
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 5.8e-62 242.3 363 43.3
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 5.8e-62 242.3 349 50.4
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 1.7e-61 240.7 340 48.5
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.7e-61 240.7 354 45.5
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 1.7e-61 240.7 345 49.0
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 2.9e-61 240.0 340 49.4
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 3.8e-61 239.6 361 44.6
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 4.9e-61 239.2 357 44.8
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 6.5e-61 238.8 343 49.6
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 6.5e-61 238.8 379 46.7
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 8.4e-61 238.4 362 45.0
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 1.1e-60 238.0 355 51.5
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 1.4e-60 237.7 363 48.2
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 1.4e-60 237.7 365 46.0
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.9e-60 237.3 366 46.4
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 2.5e-60 236.9 345 44.3
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 2.5e-60 236.9 375 45.1
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 3.2e-60 236.5 354 48.9
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 5.5e-60 235.7 340 45.9
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 1.2e-59 234.6 351 47.3
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 1.2e-59 234.6 351 47.3
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 2.1e-59 233.8 341 43.7
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 2.1e-59 233.8 359 44.0
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 3.5e-59 233.0 334 49.4
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 3.5e-59 233.0 334 49.4
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.5e-59 233.0 341 44.6
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 6.0e-59 232.3 369 46.1
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 6.0e-59 232.3 339 54.9
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 7.9e-59 231.9 360 46.9
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 7.9e-59 231.9 363 50.1
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 7.9e-59 231.9 345 45.8
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 7.9e-59 231.9 342 46.5
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.0e-58 231.5 370 45.1
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.3e-58 231.1 340 47.6
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.8e-58 230.7 367 47.4
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.8e-58 230.7 348 47.1
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 5.1e-58 229.2 335 52.8
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 5.1e-58 229.2 343 49.0
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 5.1e-58 229.2 346 46.5
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 8.7e-58 228.4 369 46.1
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 8.7e-58 228.4 369 46.1
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.1e-57 228.0 352 48.0
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.6e-56 224.2 368 42.9
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.6e-56 224.2 371 48.5
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 8.2e-56 221.9 369 44.4
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 2.4e-55 220.3 335 41.8
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 4.1e-55 219.5 368 42.1
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.6e-54 216.9 352 46.6
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 7.6e-54 215.3 341 46.6
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 1.0e-53 214.9 358 48.9
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 1.1e-52 211.5 337 45.1
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 1.1e-52 211.5 337 45.1
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 4.2e-52 209.5 356 41.3
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 1.2e-51 208.0 360 45.0
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.6e-51 207.6 359 45.7
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 2.1e-51 207.2 378 45.5
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 7.9e-51 205.3 331 40.8
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 2.5e-44 183.7 351 39.6
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 3.2e-44 183.3 284 46.1
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 1.2e-43 181.4 355 46.8
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 3.0e-42 176.8 280 56.4
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.5e-41 174.5 364 38.5
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 1.3e-40 171.4 314 40.1
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 1.7e-37 161.0 327 38.2
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 6.5e-37 159.1 347 43.5
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 7.9e-35 152.1 366 32.8
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.6e-33 147.1 279 49.1
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 3.3e-33 146.7 362 33.4
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 6.3e-32 142.5 214 42.5
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 2.4e-31 140.6 353 43.9
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 3.1e-31 140.2 358 33.5
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 7.0e-31 139.0 304 35.9
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 7.0e-31 139.0 347 36.9
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 5.9e-30 136.0 334 32.6
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 1.5e-28 131.3 320 32.5
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.1e-27 127.5 339 33.6
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 8.0e-27 125.6 128 59.4
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 2.8e-24 117.1 218 40.8
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 2.0e-22 110.9 321 32.1
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 3.8e-21 106.7 139 45.3
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 6.5e-21 105.9 185 38.4
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 5.5e-20 102.8 98 58.2
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 6.1e-19 99.4 94 57.4
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 2.2e-16 90.9 314 30.3
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 3.7e-16 90.1 319 30.4
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 2.4e-15 87.4 136 41.9
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 7.0e-15 85.9 84 53.6
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 3.5e-14 83.6 428 26.2
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.5e-12 78.2 346 31.8
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.0e-10 70.1 88 54.5
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 6.8e-10 69.3 67 52.2
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.2e-09 68.6 197 40.1
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.2e-08 64.3 71 50.7
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 5.4e-07 59.7 38 65.8
Lsat_1_v5_gn_9_30260 Lactuca sativa HOM05D004638 ORTHO05D005443 1.2e-06 58.5 112 39.3
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 1.6e-06 58.2 232 35.8
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 2.0e-06 57.8 38 63.2


User provided reference genes

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