Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320561 Helianthus annuus HOM05D003651 ORTHO05D009121 5.4e-59 230.7 110 100.0
HanXRQChr17g0540981 Helianthus annuus HOM05D003651 ORTHO05D009121 2.3e-54 215.3 109 94.5
ECA246G4989 Erigeron canadensis HOM05D001982 ORTHO05D007237 3.5e-50 201.4 109 85.3
Lsat_1_v5_gn_3_36300 Lactuca sativa HOM05D003651 ORTHO05D009121 3.8e-49 198.0 109 85.3
CSS0006043 Camellia sinensis var. sinensis HOM05D003651 ORTHO05D009121 6.8e-46 187.2 109 76.1
Hma1.2p1_0044F.1_g026025 Hydrangea macrophylla HOM05D003651 ORTHO05D009121 4.4e-45 184.5 109 76.1
Dinv17622 Davidia involucrata HOM05D003651 ORTHO05D009121 7.5e-45 183.7 109 78.0
Gohir.D01G013800 Gossypium hirsutum HOM05D003651 ORTHO05D009121 9.8e-45 183.3 109 78.9
TWI53G1450 Tripterygium wilfordii HOM05D003651 ORTHO05D009121 1.3e-44 183.0 109 75.2
Lj2g0015389 Lotus japonicus HOM05D003651 ORTHO05D009121 1.7e-44 182.6 109 75.2
Prupe.1G348700 Prunus persica HOM05D003651 ORTHO05D009121 1.7e-44 182.6 109 76.1
Sabra07G0061200 Salix brachista HOM05D003651 ORTHO05D009121 1.7e-44 182.6 109 76.1
vmacro08859 Vaccinium macrocarpon HOM05D003651 ORTHO05D009121 1.7e-44 182.6 109 74.3
vmacro23479 Vaccinium macrocarpon HOM05D003651 ORTHO05D009121 1.7e-44 182.6 109 74.3
Gorai.002G015600 Gossypium raimondii HOM05D003651 ORTHO05D009121 2.2e-44 182.2 109 78.0
COL.COLO4_33051 Corchorus olitorius HOM05D003651 ORTHO05D009121 2.9e-44 181.8 109 76.1
SGA_v2.0_scaffold24G10276 Striga asiatica HOM05D003651 ORTHO05D009121 2.9e-44 181.8 109 79.8
ClCG02G014080 Citrullus lanatus HOM05D003651 ORTHO05D009121 3.7e-44 181.4 109 76.1
Actinidia13716 Actinidia chinensis HOM05D001982 ORTHO05D003938 6.4e-44 180.6 110 73.6
Gohir.A01G012600 Gossypium hirsutum HOM05D003651 ORTHO05D009121 6.4e-44 180.6 109 77.1
MD13G1003800 Malus domestica HOM05D003651 ORTHO05D009121 6.4e-44 180.6 109 75.2
Potri.007G072600 Populus trichocarpa HOM05D003651 ORTHO05D009121 6.4e-44 180.6 109 75.2
Actinidia38417 Actinidia chinensis HOM05D003651 ORTHO05D009121 8.3e-44 180.3 109 75.2
MELO3C011750.2 Cucumis melo HOM05D003651 ORTHO05D009121 8.3e-44 180.3 109 75.2
CsaV3_5G006090 Cucumis sativus L. HOM05D003651 ORTHO05D009121 8.3e-44 180.3 109 75.2
GSVIVG01026228001 Vitis vinifera HOM05D003651 ORTHO05D009121 8.3e-44 180.3 109 76.1
CANSAT78G0256 Cannabis sativa HOM05D003651 ORTHO05D009121 1.1e-43 179.9 109 78.9
Hund08607 Selenicereus undatus HOM05D003651 ORTHO05D009121 1.1e-43 179.9 109 75.2
MSTRG.25132 Avicennia marina HOM05D003651 ORTHO05D009121 1.4e-43 179.5 109 77.1
Cpa.g.sc0.126 Carica papaya HOM05D003651 ORTHO05D009121 1.4e-43 179.5 109 77.1
Rhsim04G0172100 Rhododendron simsii HOM05D003651 ORTHO05D009121 1.4e-43 179.5 109 72.5
Ciclev10031498m.g Citrus clementina HOM05D003651 ORTHO05D009121 1.8e-43 179.1 109 77.1
Glyma.09G283400 Glycine max HOM05D003651 ORTHO05D009121 1.8e-43 179.1 109 73.4
Thecc.02G158300 Theobroma cacao HOM05D003651 ORTHO05D009121 1.8e-43 179.1 109 77.1
TAR622G1083 Trochodendron aralioides HOM05D003651 ORTHO05D009121 1.8e-43 179.1 109 75.2
Aqoxy3G04306 Aquilegia oxysepala HOM05D003651 ORTHO05D009121 2.4e-43 178.7 109 73.4
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 2.4e-43 178.7 109 73.4
CiPaw.05G169300 Carya illinoinensis HOM05D003651 ORTHO05D009121 2.4e-43 178.7 109 75.2
TPR.G29791 Trifolium pratense HOM05D003651 ORTHO05D009121 2.4e-43 178.7 109 73.4
DCAR_023462 Daucus carota HOM05D003651 ORTHO05D009121 4.1e-43 177.9 109 76.1
Glyma.07G197600 Glycine max HOM05D003651 ORTHO05D009121 4.1e-43 177.9 109 72.5
Glyma.20G002400 Glycine max HOM05D003651 ORTHO05D009121 4.1e-43 177.9 109 72.5
Lalb_Chr18g0051531 Lupinus albus HOM05D003651 ORTHO05D009121 4.1e-43 177.9 109 71.6
Phvul.003G004300 Phaseolus vulgaris HOM05D003651 ORTHO05D009121 4.1e-43 177.9 109 73.4
MBI06_g04985_MAGBIO Magnolia biondii HOM05D003651 ORTHO05D009121 5.4e-43 177.6 109 72.5
MBI06_g16015_MAGBIO Magnolia biondii HOM05D003651 ORTHO05D009121 5.4e-43 177.6 109 72.5
Manes.13G084000 Manihot esculenta HOM05D003651 ORTHO05D009121 5.4e-43 177.6 109 74.3
Medtr1g038430 Medicago truncatula HOM05D003651 ORTHO05D009121 5.4e-43 177.6 109 71.6
Sed0008039 Sechium edule HOM05D003651 ORTHO05D009121 5.4e-43 177.6 109 73.4
THA.LOC104818375 Tarenaya hassleriana HOM05D003651 ORTHO05D009121 5.4e-43 177.6 109 72.5
VMungo0251G3263 Vigna mungo HOM05D003651 ORTHO05D009121 5.4e-43 177.6 109 73.4
Cc11_g03440 Coffea canephora HOM05D003651 ORTHO05D009121 7.0e-43 177.2 109 74.3
Migut.C00668 Erythranthe guttata HOM05D003651 ORTHO05D009121 7.0e-43 177.2 109 74.3
SalBow7G4156 Salvia bowleyana HOM05D003651 ORTHO05D009121 7.0e-43 177.2 109 73.4
Psat6g099560 Pisum sativum HOM05D003651 ORTHO05D009121 9.2e-43 176.8 109 72.5
Aa31LG11G2690 Aethionema arabicum HOM05D003651 ORTHO05D009121 1.2e-42 176.4 110 73.6
Eucgr.G02581 Eucalyptus grandis HOM05D003651 ORTHO05D009121 1.2e-42 176.4 109 73.4
Nn3g18664 Nelumbo nucifera HOM05D003651 ORTHO05D009121 1.6e-42 176.0 109 72.5
Carub.0006s2101 Capsella rubella HOM05D003651 ORTHO05D009121 2.7e-42 175.3 109 72.5
AUR62017710 Chenopodium quinoa HOM05D003651 ORTHO05D009121 2.7e-42 175.3 109 70.6
PSO063G6422 Papaver somniferum HOM05D003651 ORTHO05D009121 2.7e-42 175.3 109 70.6
PSO782G1359 Papaver somniferum HOM05D003651 ORTHO05D009121 2.7e-42 175.3 109 70.6
Atru.chr11.1140 Acer truncatum HOM05D003651 ORTHO05D009121 3.5e-42 174.9 109 72.5
EL10Ac9g22962 Beta vulgaris HOM05D003651 ORTHO05D009121 3.5e-42 174.9 109 70.6
FvH4_4g37080 Fragaria vesca HOM05D003651 ORTHO05D009121 3.5e-42 174.9 109 70.6
AT5G23240 Arabidopsis thaliana HOM05D003651 ORTHO05D009121 4.6e-42 174.5 109 73.4
CARHR190300 Cardamine hirsuta HOM05D003651 ORTHO05D009121 4.6e-42 174.5 109 72.5
AUR62032971 Chenopodium quinoa HOM05D003651 ORTHO05D009121 6.0e-42 174.1 109 69.7
Thhalv10005272m.g Eutrema salsugineum HOM05D003651 ORTHO05D009121 6.0e-42 174.1 109 72.5
Nitab4.5_0005579g0030 Nicotiana tabacum HOM05D003651 ORTHO05D009121 1.0e-41 173.3 109 71.6
Nitab4.5_0012292g0020 Nicotiana tabacum HOM05D003651 ORTHO05D009121 1.0e-41 173.3 109 71.6
QL03p046497 Quercus lobata HOM05D003651 ORTHO05D009121 1.0e-41 173.3 109 72.5
RcHm_v2.0_Chr4g0446831 Rosa chinensis HOM05D003651 ORTHO05D009121 1.0e-41 173.3 109 69.7
FAN07G0926 Fragaria x ananassa HOM05D003651 ORTHO05D009121 1.3e-41 172.9 109 69.7
FAN17G1001 Fragaria x ananassa HOM05D003651 ORTHO05D009121 1.3e-41 172.9 109 69.7
Duzib132G0272 Durio zibethinus HOM05D003651 ORTHO05D009121 1.7e-41 172.6 109 74.3
PGR142G2284 Punica granatum HOM05D003651 ORTHO05D009121 1.7e-41 172.6 109 72.5
Sp2g23910 Schrenkiella parvula HOM05D003651 ORTHO05D009121 1.7e-41 172.6 109 71.6
A03p46320 Brassica napus HOM05D003651 ORTHO05D009121 2.3e-41 172.2 109 70.6
C07p44340 Brassica napus HOM05D003651 ORTHO05D009121 2.3e-41 172.2 109 70.6
BolC7t44955H Brassica oleracea HOM05D003651 ORTHO05D009121 2.3e-41 172.2 109 70.6
BraA03t13756Z Brassica rapa HOM05D003651 ORTHO05D009121 2.3e-41 172.2 109 70.6
Ah.01g001470 Amaranthus hybridus HOM05D003651 ORTHO05D009121 3.0e-41 171.8 109 69.7
FAN12G2121 Fragaria x ananassa HOM05D003651 ORTHO05D009121 3.0e-41 171.8 109 69.7
Solyc02g014860.3 Solanum lycopersicum HOM05D003651 ORTHO05D009121 3.9e-41 171.4 109 70.6
Sopen02g004380 Solanum pennellii HOM05D003651 ORTHO05D009121 3.9e-41 171.4 109 70.6
CAN.G39.7 Capsicum annuum HOM05D003651 ORTHO05D009121 1.1e-40 169.9 109 68.8
AL6G34460 Arabidopsis lyrata HOM05D003651 ORTHO05D009121 1.5e-40 169.5 109 71.6
ATR0618G209 Amborella trichopoda HOM05D003651 ORTHO05D009121 1.9e-40 169.1 109 69.7
PGSC0003DMG400006735 Solanum tuberosum HOM05D003651 ORTHO05D009121 1.9e-40 169.1 109 67.9
arahy.Tifrunner.gnm1.ann1.U7IVDN Arachis hypogaea HOM05D003651 ORTHO05D009121 2.5e-40 168.7 109 65.1
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 5.6e-40 167.5 104 73.1
CDE08G0147 Ceratophyllum demersum HOM05D003651 ORTHO05D009121 9.5e-40 166.8 109 63.3
Os04g0675400 Oryza sativa ssp. japonica HOM05D003651 ORTHO05D009121 3.6e-39 164.9 109 67.0
unitig_85.g27228 Utricularia gibba HOM05D003651 ORTHO05D009121 6.2e-39 164.1 109 70.6
Zm00001eb433640 Zea mays HOM05D003651 ORTHO05D009121 1.3e-36 156.4 109 63.3
Peaxi162Scf00334g00325 Petunia axillaris HOM05D003651 ORTHO05D009121 9.2e-35 150.2 109 66.1
SEGI_26845 Sequoiadendron giganteum HOM05D003651 ORTHO05D009121 2.3e-33 145.6 109 57.8
Pp3c27_1590 Physcomitrium patens HOM05D003651 ORTHO05D009121 4.3e-32 141.4 109 57.8
SMO147G0179 Selaginella moellendorffii HOM05D003651 ORTHO05D009121 4.3e-32 141.4 109 57.8
Pp3c5_13590 Physcomitrium patens HOM05D003651 ORTHO05D009121 1.6e-31 139.4 109 56.9
AagrBONN_evm.TU.Sc2ySwM_344.3759 Anthoceros agrestis HOM05D003651 ORTHO05D009121 4.9e-28 127.9 109 52.3
PRCOL_00004997 Prasinoderma coloniale HOM05D003651 ORTHO05D009121 1.1e-19 100.1 112 47.3
Duzib248G0139 Durio zibethinus HOM05D003651 ORTHO05D009121 7.8e-18 94.0 72 63.9
AagrBONN_evm.TU.Sc2ySwM_228.4714 Anthoceros agrestis HOM05D003651 ORTHO05D010159 1.7e-17 92.8 113 43.4
PRCOL_00006718 Prasinoderma coloniale HOM05D003651 ORTHO05D009121 1.7e-17 92.8 115 43.5
MCO10G036 Micromonas commoda HOM05D003651 ORTHO05D009121 5.6e-16 87.8 124 40.3
Cre07.g320350 Chlamydomonas reinhardtii HOM05D003651 ORTHO05D009121 7.3e-16 87.4 120 40.8
SMO364G0270 Selaginella moellendorffii HOM05D003651 ORTHO05D010159 1.1e-14 83.6 116 39.7
Zm00001eb278150 Zea mays HOM05D003651 ORTHO05D010159 2.6e-13 79.0 108 40.7
Peaxi162Scf00700g00533 Petunia axillaris HOM05D003651 ORTHO05D010159 9.9e-13 77.0 107 39.3
Cre01.g009900 Chlamydomonas reinhardtii HOM05D005546 ORTHO05D006458 2.9e-12 75.5 105 39.0
CBR_g12210 Chara braunii HOM05D005546 ORTHO05D006458 3.8e-12 75.1 104 38.5
Os06g0474800 Oryza sativa ssp. japonica HOM05D003651 ORTHO05D010159 4.9e-12 74.7 108 40.7
GSVIVG01001994001 Vitis vinifera HOM05D003651 ORTHO05D010159 1.4e-11 73.2 108 38.0
Mapoly0005s0147 Marchantia polymorpha HOM05D005546 ORTHO05D006458 1.9e-11 72.8 104 42.3
PRCOL_00006940 Prasinoderma coloniale HOM05D003651 ORTHO05D009121 1.9e-11 72.8 108 38.0
QL02p075213 Quercus lobata HOM05D003651 ORTHO05D010159 3.2e-11 72.0 108 39.8
Medtr4g080350 Medicago truncatula HOM05D005546 ORTHO05D006458 4.2e-11 71.6 104 41.3
Atru.chr6.2762 Acer truncatum HOM05D005546 ORTHO05D006458 7.1e-11 70.9 104 37.5
Psat7g164440 Pisum sativum HOM05D005546 ORTHO05D006458 9.3e-11 70.5 104 38.5
Aqoxy1G03745 Aquilegia oxysepala HOM05D003651 ORTHO05D010159 1.2e-10 70.1 108 39.8
Aqoxy3G02829 Aquilegia oxysepala HOM05D003651 ORTHO05D010159 1.2e-10 70.1 108 39.8
TAR374G1749 Trochodendron aralioides HOM05D003651 ORTHO05D010159 1.2e-10 70.1 110 36.4
Cre02.g104500 Chlamydomonas reinhardtii HOM05D005546 ORTHO05D006458 1.6e-10 69.7 109 38.5
ClCG00G002140 Citrullus lanatus HOM05D003651 ORTHO05D010159 1.6e-10 69.7 108 38.0
ClCG09G019160 Citrullus lanatus HOM05D003651 ORTHO05D010159 1.6e-10 69.7 108 38.0
Gohir.A12G091600 Gossypium hirsutum HOM05D005546 ORTHO05D006458 1.6e-10 69.7 104 37.5
COL.COLO4_29085 Corchorus olitorius HOM05D003651 ORTHO05D010159 2.1e-10 69.3 108 38.0
Medtr1g038470 Medicago truncatula HOM05D002850 ORTHO05D003285 2.1e-10 69.3 65 50.8
Migut.H00089 Erythranthe guttata HOM05D003651 ORTHO05D010159 2.7e-10 68.9 109 34.9
Gohir.D12G091700 Gossypium hirsutum HOM05D005546 ORTHO05D006458 2.7e-10 68.9 104 37.5
Gorai.008G099300 Gossypium raimondii HOM05D005546 ORTHO05D006458 2.7e-10 68.9 104 37.5
Potri.001G347600 Populus trichocarpa HOM05D003651 ORTHO05D010159 3.5e-10 68.6 112 38.4
SalBow1G8141 Salvia bowleyana HOM05D003651 ORTHO05D010159 3.5e-10 68.6 106 38.7
vmacro05460 Vaccinium macrocarpon HOM05D003651 ORTHO05D010159 3.5e-10 68.6 111 36.9
Eucgr.J02231 Eucalyptus grandis HOM05D003651 ORTHO05D010159 4.6e-10 68.2 107 35.5
MCO14G069 Micromonas commoda HOM05D003651 ORTHO05D009121 4.6e-10 68.2 57 50.9
Sed0023427 Sechium edule HOM05D003651 ORTHO05D010159 4.6e-10 68.2 105 37.1
vmacro05854 Vaccinium macrocarpon HOM05D003651 ORTHO05D010159 4.6e-10 68.2 111 36.9
MELO3C021566.2 Cucumis melo HOM05D003651 ORTHO05D010159 6.0e-10 67.8 105 38.1
CsaV3_5G027230 Cucumis sativus L. HOM05D003651 ORTHO05D010159 6.0e-10 67.8 105 38.1
Rhsim10G0018400 Rhododendron simsii HOM05D003651 ORTHO05D010159 7.8e-10 67.4 110 36.4
PSO832G4261 Papaver somniferum HOM05D003651 ORTHO05D010159 1.0e-09 67.0 104 36.5
Duzib147G0109 Durio zibethinus HOM05D003651 ORTHO05D010159 1.3e-09 66.6 108 35.2
Glyma.19G063100 Glycine max HOM05D003651 ORTHO05D010159 1.3e-09 66.6 108 35.2
MD17G1030400 Malus domestica HOM05D003651 ORTHO05D010159 1.3e-09 66.6 107 36.4
Cfa007392 Carpinus fangiana HOM05D003651 ORTHO05D010159 1.7e-09 66.2 108 37.0
Haze_14717 Corylus avellana HOM05D003651 ORTHO05D010159 1.7e-09 66.2 108 37.0
Gohir.A09G028400 Gossypium hirsutum HOM05D003651 ORTHO05D010159 2.3e-09 65.9 108 35.2
Gorai.006G032300 Gossypium raimondii HOM05D003651 ORTHO05D010159 2.3e-09 65.9 108 35.2
Thecc.04G015100 Theobroma cacao HOM05D003651 ORTHO05D010159 2.3e-09 65.9 108 36.1
Lj7A596T40 Lonicera japonica HOM05D003651 ORTHO05D010159 3.0e-09 65.5 108 37.0
CiPaw.03G041900 Carya illinoinensis HOM05D003651 ORTHO05D010159 3.9e-09 65.1 108 36.1
PGR083G1139 Punica granatum HOM05D003651 ORTHO05D010159 5.1e-09 64.7 107 35.5
AagrBONN_evm.TU.Sc2ySwM_117.1640 Anthoceros agrestis HOM05D005546 ORTHO05D006458 6.6e-09 64.3 88 38.6
PRCOL_00005113 Prasinoderma coloniale HOM05D003651 ORTHO05D009121 8.7e-09 63.9 106 34.9
Sabra16G0227100 Salix brachista HOM05D003651 ORTHO05D010159 8.7e-09 63.9 111 36.9
Prupe.3G289400 Prunus persica HOM05D003651 ORTHO05D010159 1.1e-08 63.5 107 36.4
Dinv33462 Davidia involucrata HOM05D003651 ORTHO05D010159 1.5e-08 63.2 108 35.2
RcHm_v2.0_Chr2g0172761 Rosa chinensis HOM05D003651 ORTHO05D010159 1.5e-08 63.2 106 35.8
FAN09G1009 Fragaria x ananassa HOM05D003651 ORTHO05D010159 1.9e-08 62.8 105 34.3
Manes.17G115100 Manihot esculenta HOM05D003651 ORTHO05D010159 2.5e-08 62.4 109 33.0
FvH4_6g51170 Fragaria vesca HOM05D003651 ORTHO05D010159 4.3e-08 61.6 106 35.8
Atru.chr6.2357 Acer truncatum HOM05D003651 ORTHO05D010159 7.3e-08 60.8 106 35.8
Ciclev10016190m.g Citrus clementina HOM05D003651 ORTHO05D010159 7.3e-08 60.8 108 33.3
MCO05G279 Micromonas commoda HOM05D003651 ORTHO05D010159 1.6e-07 59.7 66 42.4
FAN14G4786 Fragaria x ananassa HOM05D003651 ORTHO05D010159 2.1e-07 59.3 106 34.9
Medtr1g038510 Medicago truncatula HOM05D003651 ORTHO05D267509 1.1e-06 57.0 37 70.3
MCO09G138 Micromonas commoda HOM05D003651 ORTHO05D010159 5.3e-06 54.7 57 40.4


User provided reference genes

Program Settings